LOC120566709 (LOC104958698,LOC101067481,LOC103391036,LOC108243082)


Basic Information

Item Value
gene id LOC120566709
gene name LOC104958698,LOC101067481,LOC103391036,LOC108243082
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21518130 ~ 21531269 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813310.1
CAGAGATGTGGAACTCCCATTGATTGATCTCCACAACACTCCCCGCTGAACAGAGAAAACACTCGGTAGCGAATGCAAGAGGGGATTTAAATCGGACAAATATTGTCCTCGTTACTTGACGGATAAGGTAGCTATCGGTTTTCTCATGCAGTCTGAGGTAATCCGCTATTAGCATTGTTTAACGACTAGCCTAACATCAATACAGTGCGACGTTAGCTAGCTTGTAATGTCGGCACTGTTGGACTTGTTTTCCCCTCTAGACCCCGCTTCCTGTTAGCCTTGGGCTAGCTTGAAAATCGAAAATATGCTAATGAACGAACAGGTATAGTTAGCCAACGCAAAGGGGTGTAACTTTACTACTTACAGTAGACTACCGGTTGCAATTTAGCTGGAATTGATTCACGAATATATGctgataacttttttttttacagccagcTATTAGAGCAGCTGGTTTCCTTTAGTTTGCTAACGCTCGACAGCTAGCTAGCCATCTTGCTTGTGTTGAGGGATTTAAGTATTTAACTTGACAAGCTTTTGGTGGCAGAGAGCGAGCGATATAACTTCAGTTACATATTAATATATGCGGCAATGGTCTCACTTGTATAGGACCCAATTTCTTGCGACTAACGTTAATGCCTTAAAATACTTGGTTTTACTGTGGAAAGCCTGACAGTGTTTCACTGTGAGCAGACAATAGAGAACCGGAGACTTGCTGAGCTGTTGTTCTGGTAACGACGAAAACCACAGATAAATAACGTAGAGAAAATTGTATTTTGATTAATGTTTTGTTACATCGCATGCTGATATAAgtacaatacttttaaaataacgttagctacatttgTAAGTTTATAAGCGGCAAAATAAATAAGCAGTTGACCCGCACAAATAGCTTGGGGGACAGTGGACGCTTGTGCGACATATGGACTGTTTCCCTGAACCCGCTGCTTTCAGGTATCTCATCTCATTATATTAGCTTACACAACCGCTTTATTAAATGCCTCAGAAAACACTCGCAGTAGCCGGTAGTCATCAGAGGTAACTAGGTGGATAGAGAGACGCGTAGAAGCAGTCTGAAGAGGGAGGCTCCTGCCCGTTTCTGGACGTCCATCTCTCCAGCCTACCTTCATCACGTCCATCCACCACCGCCCTCCCCAGCCATGGACCCCCCGAGGACTCGGTCACGGTCTCGGTCTGGTTTCTATCATTTCGGCAACGTTGGGAGTAATAGCAGTGGTAACGCGGTTGGTAACGGGAGCATGATGAACGCCAGCGGAGGTGGAGTGAGCTACCCGCAGCAGAGCAACCCTGGCTGGGCGCCGCACCACGGTGGCCGTAGCTACCCGGAGAGCCAGCAGCAACACACCCAGGGGAGCTATCTGTCCGCAGGGGCGCAGCGCCACTCCTCACACGGAGCCCACAGACACCCCGGGGCCGGAGGAGTGCTACATTTTCATCCAGATAATGTGTGCAACGACGATCGAGACAAAATGGAAGACAGCCCAAGCCCGAAAAGGCAGCGTCTTTCCCAGCAGACCATGTTGGATCTAAATTCCGCCCCTCCCTCTACTCCTTCCTCTCCCATTCGTCCCTGGGAGCTGCCTCCCAGTCGCAGACCACACCCCCACTACATGCCAGAGAGATGCCACACGCCTGTTCGCAACAGACGCAGCCCTCCAATGAGACGCCAGCGTGGCCGGAGAGACCGTCTGACCCGCCACCACAACCACCACGCCCAcaacaaccaccaccaccaccaccactacaacagcaacaacaacaacaacaaccaccatcaccaccatcaccaccccaacgcccaccatcatcatcaccaccaccacctgcaCTCTCACCACGGCCTGTCGCCAGGCCACCAGGATGAGAACTACCGTCACCCGGCTCCCCCTCAGGGCTACCCACCCTATAACCAGCAGCCGTCCCGAGGGCTGGGGCCCGGGCTTGAAGAGCGCCCTGGTCACCATCCCACAAATCCCTCCCCCAGGCCCCTCCACCAGTCACCGAACCTGTCTCCCAGGCTGCTGCACCCTGCAGCCCATCCACAGcacccacacccccacccccacccccacccatcCCAGCAGAGCAGTATGGTGCTGGACCTCCATGAGCAGGGTTCAGCTCCAGTATCATATGCTGTGTCTCCTCCGGGAGTGCCACCAGGCCTGCCGCCGCGCTCTGCCCCTCAGCAGATCCCGGCATGCTCAGTAGTCTTTAGTGGACAGCACTATCCCGTCTGCAGTGTCCCTCCtcctGTCCTTCAGACTTGTTCTGTGCAACACTTACCCATGCCCTACCCGTTCCCATCACTGCTGTCCAGTGACCAGGCCTTCCTACTTCCCCCTCCTCACCTCCCCCATCCCCCAGCACACCTTTCCCACCACCCACCTCACCTGCCCCAGCCTGGACAGTTTGGACCCTATCCGACGCAGCAGGCCCGATCGCCGTTACAGAGGATAGAGAATGACGTGGAGCTGCTTGGAGAACACCTGTCTTTGGGTGCTGGGCTTCACTATCCCCCCGCCACCCACCCTGCCCTCACACCACACTCCACACAGCTTCACTTCCTCTCCCATGACCCCCTGCCACAGGAGTTCTTCGGAGTGTCCTATCCAAACTTTATTCCGCGGCGTCTCCCTGGGCGACGGTATCgctcgcaacagccactgccaCCTTCGCCTTACCACCCCAGCCTCCTGCCTTACTTCCTTTCAATGCTGCCAGTCCAGCCCACAGGTCCTGCGATCAGTCTAGAGCTGGATGTAGACGATGGAGAAGTGGAAAATTATGAGGCCCTCCTGAACCTCGCTGAGCGTCTAGGGGAGGCCAAACTCCGTGGACTGACGAAGGGAGACATCGAACAGCTTCCTTCCTATCGGTTCAATCCAAATAACCACCAGTCTGAACAAACACTgtgtgtggtgtgtatgagTGATTTTGAGTCCCGCCAACTGCTGCGAGTCCTGCCCTGCAGCCATGAGTTCCACGGGAAGTGTGTCGACAAGTGGCTGAGGgCCAACAGGACATGTCCCATTTGTCGGGCCGACGCCTCAGAGGTCCAGAGAGACTCCGAGTGACCACATGGGGGAGCCAGATGCTCCTAATTGTCTTTGAAACACGTTCAGCATTACCTGCTCCTGATATATTGATACACATGTAtgtgcttacacacacacacacacacacacacacaccactttcTAGGGTTTTTGTGCAGCACTTTCTGCTCGTTTATTATCCTTTAAATCTTTGATCTGATTTTCATCACAGTTATTTTACTGTTCACATGAATGCAGGCCCTCACATCTTTTAGTGAATTACACCCTGCCTGACCATTGTTCTGCTGTGgtgtggtgtgcgtgtgtgtacacatgcatgcaccACATCTGTGCAAGTGGTGTTTGGTCAGCCCTGCAATGCTGAGCGGTGGTACgtgactgtgtgttttcagtgtatgtgggtgtgtaaGAGATTTTAGAGGTCCTGGCGCATGCCTGAGTTTCTGTTGTGTAGCAGACATGAGTAACGACATGGGAGAATTTTTGCTCTCGTGAGTGACTGACTTTACTTCCTGTTTGTACGTTTAtgcactgtctgtctgtatgcatactccgtgtgtatgtatgttatagACTTAAATCCTTTTCTCTAGTTTGACACTAAGGGTCCATGCTGCCACTATATTTCTTGGTTGCCTATTTGATCCATTTGTTTCtgtagattattattattattttattattattattattattaattattattattgttactcAACCATTATAAGTGATTGTTTTCCTGCCTGGCAGTTACCTCATCATTCCGGCTTTGATCATCTTTCATTACAAGCGCTTCACAGCATTACTTTGAAACTAagcacatttatatatttttcttttcttagtaAAAATAAGTTTGTCTGTGACTTTGCAGTGGCACATGtgttacatatatacatatatctatatatactgtataaatctATGAATATCTGTATACCAAATAAAAGGCTTGATATGAACTTTTTACAATCA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF38-like

GO: NA

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813310.1 True 4058 mRNA 0.50 12 21518130 21531269

Neighbor

gene id symbol gene type direction distance location
LOC120566710 NA coding upstream 438 21511407 ~ 21517692 (+)
ankrd13d ankrd13d coding upstream 24079 21485633 ~ 21494051 (+)
kdm2ab NA coding upstream 32709 21469083 ~ 21485421 (+)
ran ran coding upstream 71404 21443557 ~ 21446726 (+)
ndufs8b ndufs8,LOC102288815,LOC100707179,LOC101466861 coding upstream 75242 21438251 ~ 21442888 (+)
LOC120567432 LOC102311101,LOC102216180,LOC101470192,LOC107374508 coding downstream 13722 21544991 ~ 21562298 (+)
LOC120566694 LOC107085665,LOC104958696,LOC108243013,LOC101162933,LOC106920850 coding downstream 45396 21576665 ~ 21598950 (+)
LOC120566696 LOC104958695,LOC100708615,LOC102215588 coding downstream 77641 21608910 ~ 21618781 (+)
LOC120566695 LOC103358586,LOC106920854,LOC103471386,LOC103147504,LOC106946609 coding downstream 98484 21629753 ~ 21672860 (+)
LOC120566253 LOC108261232 coding downstream 147445 21678714 ~ 21682062 (+)
G106851 NA non-coding upstream 71034 21446882 ~ 21447096 (+)
G106712 LOC103354767 non-coding upstream 312754 21204689 ~ 21205376 (+)
G106709 ctnnd1 non-coding upstream 315960 21196804 ~ 21202170 (+)
G106708 NA non-coding upstream 321476 21196179 ~ 21196654 (+)
G106707 NA non-coding upstream 323281 21193066 ~ 21194849 (+)
G106972 NA non-coding downstream 229729 21760998 ~ 21761444 (+)
G106975 NA non-coding downstream 232098 21763367 ~ 21763641 (+)
G106992 NA non-coding downstream 312393 21843662 ~ 21843950 (+)
G107025 LOC104954424,LOC103390732 non-coding downstream 799743 22331012 ~ 22378340 (+)
LOC120566464 NA non-coding downstream 859084 22390353 ~ 22397051 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 49303 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 167152 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 234901 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 570715 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 1165963 20351721 ~ 20352167 (+)
G107163 LOC103356264 other downstream 1330921 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1372486 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 1419326 22950595 ~ 22997038 (+)
G107168 NA other downstream 1423703 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 1568756 23100025 ~ 23132685 (+)

Expression


Co-expression Network