LOC120566716 (LOC102215832)


Basic Information

Item Value
gene id LOC120566716
gene name LOC102215832
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19277131 ~ 19282674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813322.1
CTTTTCTGATCTGAAGCTGATCACTAAGAGAAGACACGTCAGGCTGCTCAGTGTAGTGGGTGTGAACGTTTGCTGTTGAAGAGAAGTTGATCTGGAAGCTGCTGACTGAGTCAACAGAGGCTGAACACTGAGGAGACATGGAAGCTGTGATCGGACTGTTGCTGATGATACTCGGAGTCTCTCATGGTGTCGAAACCTACTGTGATGGCCGACAGAATGGAGCTCAGTGTTATGGAGCTTTGGGAGGAACTGTGGTCCTCCAGCTGATGGACAATGCCTCAGAAATATCTAGATACACATGGTCAAtcaaaacaacaaccaaaacagatacaagaacaacaacaacaatactcATAGTGATAAAGAATGTGATTGTGTCTAATACGATAGCAAACAGATCCTTCTTTACTCCCAGTAATGGAACATTTAGGATCAACAACCTGAGCTGGACTGATGGAGGTGAATATGAACTTGTAATCTTTGATTCAGACGGAAAGATATCAGAGCAGCGGACTCTACAGTTGACCATTCAAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCCTCAGTACAGCTGGACTCTGGATGGACGCACACTGACAGACGCTGAGCTCCTCTCTGGAAATACTGAGACTAACAACATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGTCAGTAGGATATCTACCTGTGGATTCACATTTATTAACTGCACTTTACCCAATGGGATGCGCATGTCAAAGTGGGTGTTTGCAGCCAATAACAACCTGTGTATTGAACCAACAACAGCTCCTAACACGAGGACAGAAACTGTGGATCACTCCCTGCTCATATGTGGTGTGCGAGCAGCTGTGGTGGTTCTTGCATTAATTGGGATCACCGTCTATTTTGCTTGGAAGAAGAGGAAATACAAGATGGTCCGTCGAAAGATGGAACATCAAGAGAACTCTGTTGTGATGGTTGAAATGAGAAGTTGAACTTTAACTCTGTGAATCCACCACCTTTAACGCTTCTGTCATGTCGCGCTccactctattcctatgggtgacgtcaagcgacttcaacgtgcacgcaaagcattccgggaaggcggtgctacatttgagaaaatgtagcccgtcaaaaagctggccgatgcccagctttatgcaaatgaatccgttgaacgcgacgcgactatccagtagaagtagagcACAAAGGAGACGGGGAGAACATCACTTCTCCCTGACACAACATTCCACGCTGGACCTGCCCATAGCTGTAAATTGAGGAACCCCCATCAACGTACAAATGAGGGGAGGCGTCGCGACACCACGCGACAGTCGTGTtgcaaaagtggatctgtaccgtcAAAAGCGGCTagtgttgaagttaaaaaagttaaaaccatgcttatgttttgaaAAGAATGTACTTTCTAGATTTAATCAGATAACTACACTAATTAGCATTTGTCTGCCTCACCCCAAActcaagcttctaaagaatcaTCAGGTCTTGTCTGACATTTAGCATATTGGAAAAGACTCATTGTCCTCACAGAAAAGGTAATTTGTTCCTGctttttggggagccactccctgctgggccagacttgattagaaaaaggaaatgcatatctctgtaaacttatcggcactaccatgataaacaaCCTTTGTCTGGGAActggagtaaacctgaaatcagaggtgtgtcttTAACCTGGGACAGTTTCCATTCAaggaaacacccacaattcGACAGGAATACAATTCTGATCCTGAGAATGATTCAGGACTGCGGACTGTGACCCCACAAGCATGTCTTGCagtccactgctggcagtgttttcatgttttatgtttgattgtttttgtcatgttgtTTTCATCAtgctgttttattaaa
>XM_039813323.1
CTTTTCTGATCTGAAGCTGATCACTAAGAGAAGACACGTCAGGCTGCTCAGTGTAGTGGGTGTGAACGTTTGCTGTTGAAGAGAAGTTGATCTGGAAGCTGCTGACTGAGTCAACAGAGGCTGAACACTGAGGAGACATGGAAGCTGTGATCGGACTGTTGCTGATGATACTCGGAGTCTCTCATGGTGTCGAAACCTACTGTGATGGCCGACAGAATGGAGCTCAGTGTTATGGAGCTTTGGGAGGAACTGTGGTCCTCCAGCTGATGGACAATGCCTCAGAAATATCTAGATACACATGGTCAAtcaaaacaacaaccaaaacagatacaagaacaacaacaacaatactcATAGTGATAAAGAATGTGATTGTGTCTAATACGATAGCAAACAGATCCTTCTTTACTCCCAGTAATGGAACATTTAGGATCAACAACCTGAGCTGGACTGATGGAGGTGAATATGAACTTGTAATCTTTGATTCAGACGGAAAGATATCAGAGCAGCGGACTCTACAGTTGACCATTCAAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCCTCAGTACAGCTGGACTCTGGATGGACGCACACTGACAGACGCTGAGCTCCTCTCTGGAAATACTGAGACTAACAACATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGATTCACATTTATTAACTGCACTTTACCCAATGGGATGCGCATGTCAAAGTGGGTGTTTGCAGCCAATAACAACCTGTGTATTGAACCAACAACAGCTCCTAACACGAGGACAGAAACTGTGGGTAAGAGACATCAAAGTGTCCATAAAAGCCTCCAcgcgaagtttgaaaccagcatcagctttaaatacggtcctaatctagtcctcactaacaagtttcaaataattt
>XM_039813324.1
TTTTCTGATCTGAAGCTGATCACTAAGAGAAGACACGTCAGGCTGCTCAGTGTAGTGGGTGTGAACGTTTGCTGTTGAAGAGAAGTTGATCTGGAAGCTGCTGACTGAGTCAACAGAGGCTGAACACTGAGGAGACATGGAAGCTGTGATCGGACTGTTGCTGATGATACTCGGAGTCTCTCATGGTGTCGAAACCTACTGTGATGGCCGACAGAATGGAGCTCAGTGTTATGGAGCTTTGGGAGGAACTGTGGTCCTCCAGCTGATGGACAATGCCTCAGAAATATCTAGATACACATGGTCAAtcaaaacaacaaccaaaacagatacaagaacaacaacaacaatactcATAGTGATAAAGAATGTGATTGTGTCTAATACGATAGCAAACAGATCCTTCTTTACTCCCAGTAATGGAACATTTAGGATCAACAACCTGAGCTGGACTGATGGAGGTGAATATGAACTTGTAATCTTTGATTCAGACGGAAAGATATCAGAGCAGCGGACTCTACAGTTGACCATTCAAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCCTCAGTACAGCTGGACTCTGGATGGACGCACACTGACAGACGCTGAGCTCCTCTCTGGAAATACTGAGACTAACAACATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGTCAGTAGGATATCTACCTGTGATCACTCCCTGCTCATATGTGGTGTGCGAGCAGCTGTGGTGGTTCTTGCATTAATTGGGATCACCGTCTATTTTGCTTGGAAGAAGAGGAAATACAAGATGGTCCGTCGAAAGATGGAACATCAAGAGAACTCTGTTGTGATGGTTGAAATGAGAAGTTGAACTTTAACTCTGTGAATCCACCACCTTTAACGCTTCTGTCATGTCGCGCTccactctattcctatgggtgacgtcaagcgacttcaacgtgcacgcaaagcattccgggaaggcggtgctacatttgagaaaatgtagcccgtcaaaaagctggccgatgcccagctttatgcaaatgaatccgttgaacgcgacgcgactatccagtagaagtagagcACAAAGGAGACGGGGAGAACATCACTTCTCCCTGACACAACATTCCACGCTGGACCTGCCCATAGCTGTAAATTGAGGAACCCCCATCAACGTACAAATGAGGGGAGGCGTCGCGACACCACGCGACAGTCGTGTtgcaaaagtggatctgtaccgtcAAAAGCGGCTagtgttgaagttaaaaaagttaaaaccatgcttatgttttgaaAAGAATGTACTTTCTAGATTTAATCAGATAACTACACTAATTAGCATTTGTCTGCCTCACCCCAAActcaagcttctaaagaatcaTCAGGTCTTGTCTGACATTTAGCATATTGGAAAAGACTCATTGTCCTCACAGAAAAGGTAATTTGTTCCTGctttttggggagccactccctgctgggccagacttgattagaaaaaggaaatgcatatctctgtaaacttatcggcactaccatgataaacaaCCTTTGTCTGGGAActggagtaaacctgaaatcagaggtgtgtcttTAACCTGGGACAGTTTCCATTCAaggaaacacccacaattcGACAGGAATACAATTCTGATCCTGAGAATGATTCAGGACTGCGGACTGTGACCCCACAAGCATGTCTTGCagtccactgctggcagtgttttcatgttttatgtttgattgtttttgtcatgttgtTTTCATCAtgctgttttattaaa

Function

NR:

description
PREDICTED: peroxidasin homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813322.1 True 1974 mRNA 0.45 5 19277131 19282674
XM_039813323.1 False 983 mRNA 0.45 4 19279936 19282674
XM_039813324.1 False 1850 mRNA 0.45 4 19277131 19282673

Neighbor

gene id symbol gene type direction distance location
pdgfrb pdgfrb coding downstream 74030 19176247 ~ 19203101 (-)
LOC120567146 csf1r coding downstream 101390 19161748 ~ 19175741 (-)
LOC120567311 NA coding downstream 130104 19145238 ~ 19147027 (-)
slc35a4 slc35a4 coding downstream 131984 19143709 ~ 19145147 (-)
rbm22 rbm22,LOC102796909 coding downstream 197810 19073982 ~ 19079321 (-)
arsia arsi,LOC104927051 coding upstream 19131 19301805 ~ 19305065 (-)
aldob aldob coding upstream 49032 19331706 ~ 19334698 (-)
LOC120567398 NA coding upstream 83146 19365820 ~ 19373983 (-)
LOC120567397 NA coding upstream 93530 19376204 ~ 19384972 (-)
si:ch211-203d1.3 ssh3 coding upstream 131994 19414668 ~ 19426862 (-)
LOC120566720 NA non-coding downstream 11655 19262913 ~ 19265476 (-)
LOC120566722 NA non-coding downstream 14259 19262030 ~ 19262872 (-)
G106164 NA non-coding downstream 61213 19214800 ~ 19215918 (-)
G106128 NA non-coding downstream 143118 19129286 ~ 19134013 (-)
G106085 NA non-coding downstream 204389 19072063 ~ 19072742 (-)
LOC120566721 LOC102291516,LOC101487913,LOC102195901 non-coding upstream 4402 19287076 ~ 19288469 (-)
G106243 NA non-coding upstream 30135 19312809 ~ 19314416 (-)
G106248 NA non-coding upstream 37589 19320263 ~ 19321306 (-)
G106259 NA non-coding upstream 57820 19340494 ~ 19450124 (-)
G106276 NA non-coding upstream 112136 19394810 ~ 19395994 (-)
LOC120566717 LOC102215832 other downstream 26695 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 232180 19017752 ~ 19044951 (-)
LOC120566257 NA other downstream 585721 18687788 ~ 18691410 (-)
reep2 reep2,LOC102782871 other downstream 962716 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 1208639 18067425 ~ 18068492 (-)
tomm5 NA other upstream 153165 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 195256 19477930 ~ 19482625 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other upstream 689159 19971833 ~ 19981633 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 948234 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 1793083 21075757 ~ 21110067 (-)

Expression


Co-expression Network