vimr2


Basic Information

Item Value
gene id vimr2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25130146 ~ 25147858 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813392.1
CTTTAGGTACATGTGAAATCGTTACCGGCTGATGTTGACCGTATATTTAGTCTACTCAGTGGCCGGTGAGAGATCCCTCACCTCAGTGCAACATTCTCATTCACTGTGAATATAAAACCCCCGGCTTGGACCTGCTGCCACTATTTGCCTGTTGTGTTGTAGCCCAGTTTCAACTTATTCAAAGCCATGGCCATGCTCAGAGTGTCTTCTTATCGCAAGCTGTTTGAGGATGATAGCTGGAGTCGAAATGGAGGGTTAAGTCTGCAGTGTGCAGGGCAGTGCCGGTCCTCTGTCAgGGGTGCGGCCGTTAACAAGTGTAGCTGTGACAAGTTAGACTTTGTAGCTGCCGAGGCGCTCAACAAGGAGGGTCTGAACCGGTTTGTCCAGGAGCGCAACATCATCGCAGCCCTCAACGACCGCCTGGTCAGGCTTATTGAACTGGCCCATTGTTTTGAGGAGGAGAATGATTCTCTTGAATGTCAGATTGTTGAACTAGAGGAGAAGCTGAACAGTCGACAAGCCTCCTCCAGCATCACCTCCACTGTGGCCGAGCCTGACTACAGTCTggatgcagtggtggaaagacTGCGCAGGGAGAGGGATGAGATTCTGTGTGacacagaggagctgcagaaagAGCTTGAACGTCTGATGAAAGAGTACGAGAAGGCTGCACAGCAGACGGTCATCCTCCAGCAGGGACGACAGGAGGTTGCTGAGGAAGTCGATGCTGTGACAGCAGAGTGTTTGGCACTGAGGGAGCAAGTGGCTATCTACGAGGAGCAGCTGGCCAACATGGAGGCCCAGCACACAAcgGAAGTGGAGAATCTGCTGGAGCCAGCTGAAGGGGCTACAGGAGCAGTGGCAGCTATTACATTTGGCAGCCCTGACATCACTCCAGCCCTGCTTGTAAAAGAGTACTACTGCCAGCTGGCCGAGAACCTCCAGTATGAGTGTGGTGCATCCTCCTCCGCTGTGGTTCACAGTGGTGATGGAAAACAACTGGAAGTGGGGGAAGCTGGAGGGTCAACAGTCAAAGACTTTTCAAAGATAAACGACATCAATGAGCTGAAGATGCTGATTTCAGAGCTACAAAAGGAGCTCTCTGAGCTGGAGAAGTGTAACGAGCAGCTGGAGGACGAGGTTGAGATGAAGACGGCTGCATTTATTGACGAGATTGCTGAGTTGGAGtgtacTATTGATGAAATGCGGCACCAGGAGGCCGACTTCCAAGTGCAGATGAAGAAGCAGTGTGAAGACTACAAGGAGCTGCTCAGTGAGAAGATGGCCAGAGACATGGAAATTACTGCTTACAGgagtctggtggaggaagaggaggagcgcCTGTGCAAACTGTGACTTGAGGCTGGAGAATCAGACTGGCAGGCTGGATACTCCCCCCACACATGGATTAGAAAATAGACCAAAGAGAAACGTGAAAAACACACCGAAACCAGCACTAGGATGAAGCTTAAGGTACCAATGCAGCAATTTAAGCAGAACTTATCATGACCGATTAATACCGTCTGGAGACCTAAGCGGGGCCATTGATAACAGATCGCTGGCAGATGACCCCGAGACTCCCAAGAAAGATGGAGCTGTCTAAAAGAGGTGGGAGGATGGGGTCTGCGCAATGAGTGCGTATCCATTCAGTGTCTGGCAGGGATATTTCCTTAAGTGGGTTTTATCTTTACCAGCTCACTGCTATGATTCATAAATGTGTTGTCCCCTCTTTGTTGaacaagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgttaaacTGCGGCTCTGTGAAGTCATCCCCCTCTGATACCACCTCATCCATCACTCAAACGTTGTCTGATTACCAGCTCTTAACCCTTGACCCCATCACTGTTAACATATTGACAGTTCTCCTTTTGGTAACTAAAAGCATCCCACCTTCCCTTTGCTTTTACAGTCATgcattcatgttttgtttttacatataACTGACAGTCAAGTGTGCAGTGCACTGTTTGCTTTTCAAATGGTTCAtgaagttgttgtttttctgcagcTCTTACAACATGAGCACCTGGATGTTTCTACAAGAAAAAGTCTGTATGATTCATTATTTCTCCGTTAGAAATCAATGATCCAATTGCTGTCATTTTTAGAAATAAGCATTCTGTAATACATTCCTCtgtaatctttttattttccacatGACATTTAAGCTGTCTGTGATAAATCATTGTTGGTTCCCACTTCTGCACAAGCATCCGCATGTGCTTTAGatttaaattgaataaaactaaTTGCTTGAGAGATCACCTCA

Function

NR:

description
alpha-internexin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813392.1 True 2330 mRNA 0.48 10 25130146 25147858

Neighbor

gene id symbol gene type direction distance location
xpnpep2 xpnpep2 coding downstream 116256 25000755 ~ 25013890 (-)
sash3 sash3 coding downstream 136842 24983493 ~ 24993304 (-)
trmt12 trmt12,LOC106611794 coding downstream 181960 24943448 ~ 24948186 (-)
sytl4 NA coding downstream 187775 24928701 ~ 24942371 (-)
tspan7 tspan6,LOC104955938,LOC107378166 coding downstream 211395 24912563 ~ 24918751 (-)
ocrl ocrl coding upstream 88 25147946 ~ 25165755 (-)
si:ch73-335m24.2 LOC100690735,LOC102798665 coding upstream 19363 25167221 ~ 25172840 (-)
urp1 NA coding upstream 38731 25186589 ~ 25189449 (-)
mcts1 mcts1 coding upstream 50460 25198318 ~ 25200515 (-)
atp1b4 atp1b4 coding upstream 85328 25233186 ~ 25238614 (-)
G107907 NA non-coding downstream 56314 25073181 ~ 25073832 (-)
G107903 NA non-coding downstream 149349 24977124 ~ 24980797 (-)
G107890 NA non-coding downstream 239430 24890301 ~ 24890716 (-)
G107889 NA non-coding downstream 244719 24885009 ~ 24885427 (-)
G107888 bcorl1 non-coding downstream 245890 24884000 ~ 24884256 (-)
G107923 NA non-coding upstream 33080 25180938 ~ 25186478 (-)
G107992 sept6 non-coding upstream 143759 25291617 ~ 25297266 (-)
G108031 NA non-coding upstream 500676 25648534 ~ 25648780 (-)
G108036 NA non-coding upstream 532234 25680092 ~ 25680437 (-)
G108040 NA non-coding upstream 626724 25774582 ~ 25774823 (-)
trnav-uac_15 NA other downstream 267962 24861970 ~ 24862184 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 551047 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 1141245 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1943088 23184192 ~ 23187058 (-)
G107284 LOC103374305,LOC102779018 other downstream 1995361 23129709 ~ 23134785 (-)
ndufa1 NA other upstream 115314 25263172 ~ 25264864 (-)
G107989 NA other upstream 131745 25279603 ~ 25288086 (-)
diaph2 NA other upstream 689472 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1310137 26457995 ~ 26460732 (-)
G108181 LOC103390578 other upstream 1841406 26989264 ~ 27001011 (-)

Expression


Co-expression Network