gnpda1 (LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048)


Basic Information

Item Value
gene id gnpda1
gene name LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17843883 ~ 17846554 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813411.1
ACGCTTGCTCTCTTCATTCATGTATGTACCGGTACGTAGGCCAGCTTCGACATACGACTAATGTTTCTACAGTAAAAAGCTGTAAACCACCCGACAGAACCGTTTTTAGTAATTTAAGGACCCTCAAGTCAAACTAgcacattttttattcattattcacctagctagctagtgtaGCTGATGTTCAGTAATCGTCACCTCCGCTCGCGAGGAGCGCTGTTTGCATCCAGCAGCAGGAATCACATGATCCATCCAGACGTCTGCTGCGAGTAAAAGCTACAGATACACAGTCCAAGgACAATGAAGCTGATCATTCTCAATGACTACGACCAGGCAAGCGAGTGGGCTGCAAAGTACATTAGAAACAAGATCGTACTGTTTAGACCTGGCCCAGACAGATATTTCACCCTGGGGCTTCCCACAGGAAGCACCCCCCTGGGTTGTTACAAGAAACTCATTGAGTACTACAAGAAGGGACAAATCTCATTCCAGTATGTAAAAACCTTCAACATGGATGAATATGTAGGACTTCCCAGAGATCACCCTGAGAGCTACCACTCCTTCATGTGGAATAACTTCTTCAAGCACATAGACATAAAAGCAGAGAACACTCACATCCTGGATGGCAACGCTGCTGACCTGCAAGCAGAGTGTGCATCCTTTGAGGAAAAGATAACAGCCGCTGGGGGGATCGAGCTCTTTGTCGGAGGTATTGGACCAGATGGCCACATTGCCTTCAATGAGCCTGGTTCAAGTCTAGTTTCCAGGACCAGGGTGAAGACCCTGGCAAAGGACACTATCATGGCTAATGCACGATTCTTTGATGGGGATCTATCAAAGGTGCCCACCATGGCACTGACTGTGGGAGTGGGCACTGTCATGGACGCAAAAGAGGTCATGATTCTCATCACTGGAGCACACAAGGCATTTGCTTTATACAAAGCTATAGAGGATGGTGTGAATCACATGTGGACAGTGTCTGCGTTCCAGCAGCACCCACAGACCTTCGTATGTGATGAAGACGCCACCCTTGAACTGAGGGTTAAAACTGTAAAGTACTTCAAAGGGATGATGCACGTGCACAACAAGCTGGTGGAGCCACCTCCCTCAGTGCCAAAGAAGAACTGACGATATCTTGTCCAAACTTTGGATTCATGAagtctttttcaaaatgtaacactCCAATGATTCCTTCCTCCGGTGGAGATATATCAAGCAATGCTTGGGGTAAACCTCacccttgtaaaaaaaaaattaaaaataagcaGTTGTTGGTATTGTGCAGGCAAGTCGGGTTTCCATGTGATGGTGTTCATACTGCTTTGCTtctcatttgttatttttaataaagtGCATTTGATTTTTAA

Function

NR:

description
PREDICTED: glucosamine-6-phosphate isomerase 1

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004342 glucosamine-6-phosphate deaminase activity molecular_function

KEGG:

id description
K02564 nagB, GNPDA; glucosamine-6-phosphate deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813411.1 True 1367 mRNA 0.45 8 17843883 17846554

Neighbor

gene id symbol gene type direction distance location
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding downstream 512 17834717 ~ 17843371 (-)
sh3rf2 LOC104943536 coding downstream 74616 17749663 ~ 17769267 (-)
atrx atrx coding downstream 120869 17679700 ~ 17723014 (-)
zdhhc15b zdhhc15 coding downstream 213986 17625557 ~ 17629897 (-)
abcb7 abcb7,LOC102795903 coding downstream 225336 17587676 ~ 17618547 (-)
hspa4b hspa4 coding upstream 1222 17847776 ~ 17856376 (-)
gdf9 gdf9 coding upstream 14306 17860860 ~ 17864154 (-)
sowahab NA coding upstream 23648 17870202 ~ 17871569 (-)
fbxl3l NA coding upstream 113325 17959879 ~ 17968780 (-)
LOC120567416 LOC104938463,LOC103391208,LOC103359220,LOC100705713,LOC105026079 coding upstream 149421 17995975 ~ 18000829 (-)
G105759 NA non-coding downstream 12735 17828622 ~ 17831148 (-)
G105749 NA non-coding downstream 87968 17755214 ~ 17755915 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 507931 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 518928 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 690290 17152171 ~ 17153593 (-)
G105768 NA non-coding upstream 28282 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 30478 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 82278 17928832 ~ 17933470 (-)
G105806 atp7a non-coding upstream 131758 17978312 ~ 17980298 (-)
G105820 NA non-coding upstream 168897 18015451 ~ 18015927 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 48492 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 95336 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 266072 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 586951 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 692267 17142082 ~ 17151616 (-)
LOC120566288 NA other upstream 10530 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 140642 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 220871 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 439404 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 841234 18687788 ~ 18691410 (-)

Expression


Co-expression Network