LOC120566774 (LOC104938341,LOC103359140,LOC104943540,LOC100701639)


Basic Information

Item Value
gene id LOC120566774
gene name LOC104938341,LOC103359140,LOC104943540,LOC100701639
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17834717 ~ 17843371 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813412.1
GCCTGCCATCTACCGTGCGGGCGTCAGGGGGAAGAAGGAAGGAGATGGCCGATTAGAAGACAACGTTACCTTTGCTACTTCGTTGGCGAGATTCCTTTAACACATCTTTCAACGCATCTTAACCGCTGAAGTAGGAAGAGGACGTTTTAAGTATTCGCTCCTCTTCCACAATGGCAGAACAAAACAGCAACGTCAGATATCAAGAGCTGGTGAATGAGGAGGAACCGGCCCAGCCAGCCCAGGAGGGTCCTGCTCAGGACGCACCACCACCCTACAGCAGCATCGCTGCAGCAAATGCAGCTTTCTTTGAATACAAGGAAGATGGAGGAAGATTTCCCAACCCTCCATCCTACAGCGTTGCCACCACTTTGCCCTCCTATGACGAGGCTGAGCGAAGCAAAGAAGAGGCAGCCATCCCCCTGGTCACTGGAAGAGTCACGGAGGACGACTTTGTGGCCAGGGATGACTTTGAAGACGCTGACCAGCTGCGAATAGGAAATGACGGCATCTTCATGCTCACTTTCTTCAtGGCATTCCTCTTCAATTGGATCGGCTTCTTCTTGTCGTTCTGTTTGACCACATCAGCCGCCGGCCGATATGGAGCCATCTCTGGCTTCGGCCTGTCCCTCATAAAATGGGTTCTTATTGTCAGGTTTTCTACCTACTTCCCTGGTTACTTTGATGGACAGTACTGGATGTGGTGGGTGTTCCTGGCCGTGGGCTTCATGCTGTTCGTCAGAGGCTTTGTTAACTACTCAAGAGTGCGTAAACTGGCTGATCCCACCTATGCTACTCTTCCCCGGACAAGGGTTCTCTTCATCTATTAGAGGGTGTTGGATGTGGGACAACTGGACGTGACCAACACAAGCAGCAACTCTGTGAAGAGTTTACAAATTTTAAGTGGAGACACTTCACCAGAAATCGGCCAGACGAGTTATAGATGAAGACAACTCTCAATAAAATATTCAGGAATTATATCACTTGTTTTGAAACTTTATTAATGGAAAATGGTTAATTATATTCCCTCGATGTACTCATTAGTGGCCAATGTTAAGTGCTATTTAAATCTGTCTGTAATGTATGAGTAATGCCTTATATCATTTTGATGGTAGCGTACGAGCATGCATCTGCCcttaaggtaaaaaaaaaaaaggaggcgtCTCGTGTTGGTGACACTTGAAGCCAACAGATATTAATTAATACAGCACTCTGTAGACCTGCCTCAGCATGCAACACATTTTGTAATCTGCAGTTATGgttttattgtgactattatagGCTTTTTTTAGACACCACCTACACTTATTAAAAAGAAGCTTTCATTAGGCTGTAAATGCTGATATACCATACTTTAGACTCACCTGTTGGTTTTAGCTAGTGTTGCCCTTTTTTGTGTAGCCAGGAGGGGGCAGTGTTGTCTGCTGCTTCTAATTCATTAAGGGCATTGTCATCATAAAACATACAGGCTTGTGATTCAAATGCAGTGCGAGTAGAGCACATTAAAATGACGTCTATGTATCTACCGTATGTTAGATTTGTTGTTGTACATTGAATCAGGTAAGACGATCCGCCTCGGAAATAGAATTTAAGTTACAATTATGATTTTAGATGATCCAATTTTTAAACGTGGACAAGCCAGAAACCAGATGGCCACAAAACCGGGATGCAGAGTTGTGACAGCGACCAGGATGATTGGTATGGCTGTTTTTGAGCACATTTACTGGTTCATGTCCTCAAAAAGCTCAAGTAGATGTAATCGCCCGACCATACCATGACTCTTCAGTGAGTCAGCGGAGTCGGCATCTCCTTCATTGTCAGTGGAAAAGCTCTGTGATGATAGAAGAGAGTCCTGGCTGTCTGgatttcagctgtttatgaTCCCACTCAGACGTTTGGATCAAATTATctaagagcaaaaaaaaaaaaataactccaaTTCCATTTTCAGGTGGGTTTTTGCCTTAAGATTTAATTGACAGACAGGGAAGGGAAAAAtgttctgttattttttttatttttttgtgtgtaaatgaTTAATAAGGTGTAAGCTATCTTGTGGCTATCAAAACTATATCAAAGAATGTTGTATGCAGGTGCACTTTTAGAAACATAACCAATAAAACCCAGAGGATGTTCCTATCATTATTTTAAGTCCCAGACATATAAAACAAGGAATGACTGACACagtggtttttgtttttatattctaaGGGAAATGACATGTCAGGATAATAGCTTTTCATCATCTAAGTGCTGTTTTCAATGCGAGGAGTTAATCTGGATTTAGTCTGGTCCAAAAAACTGAACTGTTAGCTTAATCGGTTAACTTCATACTTCTGCCATGGCTTTGATACGGACTCATTATGCTTACTTCTATGTGATGTAAAGCTGcaaccttggggttttgttgttATGAAACTGTACAGAAAATGTTTAGTGTTAAATAAATGTCACTTTTAATGCATCA

Function

NR:

description
PREDICTED: NEDD4 family-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813412.1 True 2467 mRNA 0.42 8 17834717 17843371

Neighbor

gene id symbol gene type direction distance location
sh3rf2 LOC104943536 coding downstream 65450 17749663 ~ 17769267 (-)
atrx atrx coding downstream 111703 17679700 ~ 17723014 (-)
zdhhc15b zdhhc15 coding downstream 204820 17625557 ~ 17629897 (-)
abcb7 abcb7,LOC102795903 coding downstream 216170 17587676 ~ 17618547 (-)
rlim rlim,LOC104950806 coding downstream 315241 17510949 ~ 17519476 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding upstream 512 17843883 ~ 17846554 (-)
hspa4b hspa4 coding upstream 4405 17847776 ~ 17856376 (-)
gdf9 gdf9 coding upstream 17489 17860860 ~ 17864154 (-)
sowahab NA coding upstream 26831 17870202 ~ 17871569 (-)
fbxl3l NA coding upstream 116508 17959879 ~ 17968780 (-)
G105759 NA non-coding downstream 3569 17828622 ~ 17831148 (-)
G105749 NA non-coding downstream 78802 17755214 ~ 17755915 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 498765 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 509762 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 681124 17152171 ~ 17153593 (-)
G105768 NA non-coding upstream 31465 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 33661 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 85461 17928832 ~ 17933470 (-)
G105806 atp7a non-coding upstream 134941 17978312 ~ 17980298 (-)
G105820 NA non-coding upstream 172080 18015451 ~ 18015927 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 39326 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 86170 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 256906 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 577785 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 683101 17142082 ~ 17151616 (-)
LOC120566288 NA other upstream 13713 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 143825 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 224054 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 442587 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 844417 18687788 ~ 18691410 (-)

Expression


Co-expression Network