ccna2 (ccna2,LOC101477005)


Basic Information

Item Value
gene id ccna2
gene name ccna2,LOC101477005
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 31309545 ~ 31313167 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813542.1
ATCTATCTGCATGTTTCTGTGTGAGTGGACCGAGGCTAGCTGGCTTGTTTGCAGGTTGGTTGTAATCTTGGAGCACAACGAGTATGGCAacttaaagaaaacacatttgtaGAATTTGTACCGCCAACTCTGCATTGATTTGTCTGGTGTGTGTATTTCACTGCACTGCACTTCCAAGAGTCGTTGCCATCTCAACAGTTTAGTTTTGATTGTGCACCGTTCTTCCTAAGCAAACCAGAAGCTAATGCGAGCCTTGATTATAATCGTCCATACGTGATCATTTAAAACTCTTACAAGAGCTCACACCAGCTGTAGTATCTTGGTAAGCGAACGGAGACCGGTTGGACTTTTTTGGTTTGAGAGGAAACATGTCGGGAGCTAACAGAGGACAGGGAAGCGCGGCTAGTGAGTTTCACAACCAAGAAAATATGCAGTCAAGACTGAGGGGCTCGCTTAAACCCCGAGCTGCTGCTTCAAATGAGAACCAAGAAAACCTTCCACCGAAACAAGCAACCGGCAGAACCGTCCTGGGAGCCCTGCAGAACTACCAGCGAAGCAAAACCCTCAACCAGCGCGGCACCAAACAGGAGTCATCACAGCCCTCTTGCTGTAAAAATGAAGATTTAGGCAAAAGCTGCAATGAAAAGCCAATCACCAAGCCACCCACTTTCCAGATCCATGTGGACGAGCCTGATGGAGCCTGCACCAAGAAGCCACAGCAGGTGGTCGACGCTGTCAAAGCCAAAACCAAATCCATCCCCAACGAGGACGAGTCTCTACTCACAATCAATACTGTGGCACGGCTCCGACAGCCCCTGGCCACCATTGAAATGCCATCTGCAATGGATGTCAGCTTTGACTCTCCCATGGACATGTCTGTGGTTGAGGGGGAGGAGAAACAAGTTGATGTAAATGAGGTCCAGGAATATGCTGCTGAAATCCACACGTACCTGAGGGAGATGGAGGTAAAAACCAGGCCTAAGGCAGGCTACATGAAAAAGCAGCCGGACATCACCAACAGCATGAGGGCCATCCTGGTAGACTGGCTGGTTGAGGTTGGAGAAGAATACAAACTCCAGAATGAAACTCTTTATCTGGCTGTAAACTACATCGACCGCTTCCTTTCCTCAATGTCTGTCCTGAGGGGGAAGCTTCAGCTGGTTGGAACTGCTGCCATGCTGTTGGCTTCGAAATTTGAAGAAATCTACCCCCCAGAGGTGGCGGAGTTTGTTTACATCACAGACGACACCTACACCAAGAAGCAAGTGTTAAGAATGGAGCACATGGTGCTTAAAGTGCTCTCCTTTGATCTGGCAGCACCAACCATCATCCAGTTTCTCACCCAGTACTTCCTCAATCAGTCTGTTAGCAAACAGGTGGAGAGCATGGCAATGTACCTTGGGGAGCTCAGTCTGGTTGATTCAGATCCCTTCTTAAAGTACCTCCCATCACATACAGCTGCTGCAGCCTATGCCCTGGCAAACCACACAGTGACTGGTGGCTCTTGGCCCAAGTCCCTGATGGAGATGTCAGGCTACTCCCTGGAAGATCTGATGCCATGTGTTAAGGATCTGCACCAAACATGCCTCAATGCTCCTCAGCATGCTCAGCAGTCTGTTCGGGAAAAGTACAAGGGCTCAAAGTACCATGAAGTTTCCCTCATCGACACTCCAACCGAATTGCTGCTGAACTAACTTCCTCCTCTTGTCCATGTAGAGTTTTGTACTGTCTgtcttaaatatttttttttttaaatgatgtgtcACAATTTCAAATGACATGGCCTGCTCTTCTTGGAGTAGCGCTAGATGTGTTAGAGTTTTTAAGGTATTTTATATACTCAATCGACATTCATACCAGACGCTACAGTTGTTGGTTAATCAAGCAGTTTTAATGTTGACTTTTAATTGCAGACAAAATGTAGGTCTTATCCACACTGCCAACATTCTGCTTTGATGTGTCAAACTCCTGTGaatgtactttttttatttttttagaaggTTGAGTTGATGGCAGTTATTGTTGCTGGTTCACCTGAGAAGTGTGACCTTAATTTGACCTCATGGGATGCACATTAAAGCATGttttgtctgtaatggagtCAGCTGTCTCATTAAGTCTTGAGAGTTGACAGCTTTTTCAAGGCACAATCTGCACTGTAAAATATGGCTCTTGTAAATAAAATTCATTTAACATAAGA

Function

symbol description
ccna2 Enables cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; primordial germ cell; and tail bud. Orthologous to human CCNA2 (cyclin A2).

NR:

description
PREDICTED: cyclin-A2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06627 CCNA; cyclin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813542.1 True 2200 mRNA 0.46 8 31309545 31313167

Neighbor

gene id symbol gene type direction distance location
anxa5a anxa5 coding downstream 9050 31271226 ~ 31300495 (-)
fstl5 NA coding downstream 335260 30799237 ~ 30974285 (-)
LOC120566929 clg2h4orf45,LOC104948239,LOC102200624,LOC101472142 coding downstream 754356 30553176 ~ 30555189 (-)
ppid ppid coding downstream 761138 30537827 ~ 30548407 (-)
pdgfc pdgfc coding downstream 1124853 30139809 ~ 30184692 (-)
bbs7 bbs7,LOC102788539 coding upstream 1955 31315122 ~ 31321212 (-)
tmem33 tmem33 coding upstream 9198 31322365 ~ 31332549 (-)
pcgf1 pcgf1,LOC107589114 coding upstream 418810 31731977 ~ 31739944 (-)
fgf24 LOC104951404,LOC106525890,LOC103137301,LOC103363938,LOC105931924 coding upstream 470598 31783765 ~ 31795704 (-)
npm1b LOC103363949,LOC108236678 coding upstream 501825 31814992 ~ 31833319 (-)
G108854 LOC102777869,LOC101473425,LOC102203600 non-coding downstream 73728 31220092 ~ 31235817 (-)
G108840 NA non-coding downstream 134086 31174863 ~ 31175459 (-)
G108828 NA non-coding downstream 177886 31130263 ~ 31131659 (-)
G108810 qdpr non-coding downstream 305059 31002648 ~ 31004486 (-)
G108785 NA non-coding downstream 575775 30733559 ~ 30733770 (-)
LOC120566353 NA non-coding upstream 62187 31375354 ~ 31380353 (-)
G108977 NA non-coding upstream 582076 31895243 ~ 31966892 (-)
G109007 NA non-coding upstream 680979 31994146 ~ 31996173 (-)
G109092 NA non-coding upstream 1476883 32790050 ~ 32827346 (-)
G109141 NA non-coding upstream 1602589 32915756 ~ 32961910 (-)
G108781 rapgef2 other downstream 638696 30669531 ~ 30670849 (-)
G108777 rapgef2 other downstream 647922 30660912 ~ 30661623 (-)
gask1b fam198b,LOC102776406 other downstream 952689 30346978 ~ 30356856 (-)
cxcl14 cxcl14 other downstream 2501551 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 2514037 28714863 ~ 28795508 (-)
LOC120566409 limch1 other upstream 71923 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 106712 31419879 ~ 31485976 (-)
tlx2 tlx2,LOC107396138 other upstream 526375 31839542 ~ 31851757 (-)
hopx hopx other upstream 1478214 32791381 ~ 32893558 (-)
slc49a3 mfsd7 other upstream 1648870 32962037 ~ 32979661 (-)

Expression


Co-expression Network