bbs7 (bbs7,LOC102788539)


Basic Information

Item Value
gene id bbs7
gene name bbs7,LOC102788539
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 31315122 ~ 31321212 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813543.1
GTGCAGCGTTGCCTCGACAACGAACACTGCGTTTATGTGGTCCTACTGAAGTGTCTCAGGGAACATTTCAGCctaactaactagctagctaatatacgcgttaaaaaaaagatttaagtTCGCGTTTACAACACATAGAGACGGTTACTTGCTTCCGGTGTCTTAATGTATCTCGGTAAATTTGGTTAAAGATGATATCTATTCACCAAAGTAGACAGTTGGCGTGCGAATAAATCGTGTTAGTCAATTAGCtttctagctagcgttagcacgtCGAGCTAATCTCCTTGCTTTAGATAATCCCAGTCTCTCTTGACCATTACGATCGTGTTCTAACGTTGTGATTGACATACACAGTCTATGACTGCAACTAATGATCCCTGCAGTTCTATAACCTACCTGGAGCATTTGCACTATACTTTTTCCCCTTAAGAAAAAACACTCAGTGGAGAAAGAAGATGGAGCTCAACCTTAATAGAGTTGATTATATTCAGGTTGGTGTGACATCCCAGAAAACTATGAGGCTGCTTCCAGCATTGGGAAAAAAGGCAACCCAAAAGGTTGCTGTTGCTGATCATGATGGTATACTAACGTGTTTTGGGATGAAGAAAGGAGAGGCAGTGCCCGTGTTTAAAACACTTCCAGGGCAGAAAATAGCCAGAATGGACCTTGGAGGAGCTGCAGGAACTCCACAGGAGAAGATTTTTGTTTGTTCTGGTTCTCAGGTTCGAGGATTCACCAAGAAAGGCAAACAGTTTCTCACCTTTGAAGCCAACCTCACTGAGAGCATTAACGCCATGCATGTCTCAGGCGCTGATCTTTTTGTGTGTGCGAGTTACATCTACAACCACTACTGTGACTGCAAGGACCAAAACTACTACCTCTCTGGAGACAAAATCAATGATATCATATGCTTGTCCTCAGAAAATGGGACTCACCTCGTCCCGGTCCTGGCCTGCCAAGATCGGGTTCTCAGAGTCTTGCAGGGATCCGAGCTTGCCTATGACATTGAGGTCCCTGGCCCTCCATCTGTCTTGGAACTGTacaataaagatggagGAGAGGAAATCCTCTGTGGAACTACAGATGGCAATATAGGATTGGTCCAGATCGGTGAATGCTCAGCTGCGACCAAATGGGAGATTGATAACGACAAAAAGAAAGGAGGAATTCTTTGCATCGACACTTATGACATTATGGGAGACGGCGTAAACGACATCCTGGTGGGAAGGGATGATGGGACAGTTGAGGTCTACGGGTTTGACAGCGCCAATGAGCCCACATTACGCTTTGAGCATGTTTTGTCAGAGAGCGTGACTTCCATCCAGGGTGGCTGTGTGGGGAAGGAGTCTTATGATGAGGTCTTGACTGCCACTTACACAGGATGGGTAACTGGTTTGACCACTGAGCCCCAAAAGGCTGAAGCCGGCCCCGGAGATGAGGTCAGAATGAGTAAGGAGATCCAGTCCAAAGTAGAAGCACTCAGGGCAGAGCTGGAGCAGCTGCAGGTCAAAGTCAAGCAGGGCCGTGAGCAGTACCAGCAGACCTCTCAGTCGAGCACAGCCGTCTCTGCTGTGCCCGTCTTTAGCATCAATGACAAGTTCACCCTCTGCCAGGACGATGCCAGCTACAACCTCACTCTTGAGGTGCAGACAGCCATCGACAATCTGCTGCTCCAGAGTGACGTCCCCATAGACCTGCTGGATGTGGATAAGAACTCAGCTGTTGTCAGTTTCAGCGAATGTGATTCAGAGCAACCTAATGGGAACTTTCTCCTGGCCACGTACAGATGTCAGGCTAACACTACCAGACTCGAGCTCAAGGTGAGGTCCATCGAGGGACAGTATGGGACCCTGCAGGCTTATATTACCCCCAGACTGCAACCCAAGACATGCCAGGTCCGCCAATACCAGATCAAACCTCTGTCCCTCCACCAACGGACACACAGCATAGACCAAGAAAGGCCTATGAACAGGCTCAGTCTGGTGGGACAGTTCAGTTTTGCTGAGATCCACTCCTGGGTGGCCTTCTGTTTGCCAGAGGTGCCTGAGAAAACACCAGCAGGAGAGAGCATCACTTTCTATTTCCATAACACTTTTCTTGGGACACAGCTTGAAGCCACCTACTGCAAAGGGGAGGGTCACTTCAAGTCAGACAACATCTCTACCATCTCTATACTGAGTGATGTTCTCTCTAAAGAAGCCACCAAGAAGAAAATCAACCTGAACAATTCATATGATATCAACGATGAGTCTGTGAGTCACACCCTGAAGATGATCCATCCAAAGCTGGAATACCAGTTGCTGTTGGCTAGAAAGGTTCAGCTTATCGATGCACTTAAAGAGCTTCAGGTTCATGAGGGGAATGCTGACTTCCTCATCCCAGAGTATCGCAACATCTTGGATGAGTCCGCTAATCTCCTTGATGAGTACAAGAAGCAGCCAGCGCACCTCGAGAGGCTTTATGGAATGATCACAGACCTCTTCATCGACAAATTCAAGTTCAAAGGCCAGAATGTGAAGACCAAGGTGTCCTCGTTGCTGGAGATACTCGATAATTATGACTTAAATTCTCTGTTAGACTTTTTCAATGAGGCATGATATCATGTAGATCAGAGGTCAGATGGTATTATTTACTTGTCTTTAAGCGTCTTTATTTGTGCTATTTTTGTAttgtaaatacaaaaaagtTTTGTTGTATGGTAGTTCCTAGCAGTGACAATGTCATGTTGTCATTTAGATACTTTTTGTCCTAATAATAGTgtacattatttaaatatttataatatattttgttAGCATCTAAAAAACAAAGGTAGTGATTAATAAACCACTACAAGATTGCCAGTTTCCTCTTTGTTATTGGTGACTAAATTTTGGTTGAGGTTTGAAATTTCAGTGATTAAAAATAAGCCTGTTAAAAGCACAacaatttatgtttttataacaCCATTACCATAGCACTGTGAGTTCCCCctcttgaaataaaaatgtgagtTTATTTGTAA

Function

symbol description
bbs7 Acts upstream of or within several processes, including Kupffer's vesicle development; embryonic morphogenesis; and establishment of pigment granule localization. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in cytoskeleton; membrane; and neuron projection. Is expressed in brain; eye; fin; and otic placode. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 7. Orthologous to human BBS7 (Bardet-Biedl syndrome 7).

NR:

description
Bardet-Biedl syndrome 7 protein isoform X2

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0033339 pectoral fin development biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16749 BBS7; Bardet-Biedl syndrome 7 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813543.1 True 3007 mRNA 0.45 19 31315122 31321212

Neighbor

gene id symbol gene type direction distance location
ccna2 ccna2,LOC101477005 coding downstream 1955 31309545 ~ 31313167 (-)
anxa5a anxa5 coding downstream 14627 31271226 ~ 31300495 (-)
fstl5 NA coding downstream 340837 30799237 ~ 30974285 (-)
LOC120566929 clg2h4orf45,LOC104948239,LOC102200624,LOC101472142 coding downstream 759933 30553176 ~ 30555189 (-)
ppid ppid coding downstream 766715 30537827 ~ 30548407 (-)
tmem33 tmem33 coding upstream 1153 31322365 ~ 31332549 (-)
pcgf1 pcgf1,LOC107589114 coding upstream 410765 31731977 ~ 31739944 (-)
fgf24 LOC104951404,LOC106525890,LOC103137301,LOC103363938,LOC105931924 coding upstream 462553 31783765 ~ 31795704 (-)
npm1b LOC103363949,LOC108236678 coding upstream 493780 31814992 ~ 31833319 (-)
cetn4 cetn4,LOC108438842 coding upstream 667676 31988888 ~ 31993101 (-)
G108854 LOC102777869,LOC101473425,LOC102203600 non-coding downstream 79305 31220092 ~ 31235817 (-)
G108840 NA non-coding downstream 139663 31174863 ~ 31175459 (-)
G108828 NA non-coding downstream 183463 31130263 ~ 31131659 (-)
G108810 qdpr non-coding downstream 310636 31002648 ~ 31004486 (-)
G108785 NA non-coding downstream 581352 30733559 ~ 30733770 (-)
LOC120566353 NA non-coding upstream 54142 31375354 ~ 31380353 (-)
G108977 NA non-coding upstream 574031 31895243 ~ 31966892 (-)
G109007 NA non-coding upstream 672934 31994146 ~ 31996173 (-)
G109092 NA non-coding upstream 1468838 32790050 ~ 32827346 (-)
G109141 NA non-coding upstream 1594544 32915756 ~ 32961910 (-)
G108781 rapgef2 other downstream 644273 30669531 ~ 30670849 (-)
G108777 rapgef2 other downstream 653499 30660912 ~ 30661623 (-)
gask1b fam198b,LOC102776406 other downstream 958266 30346978 ~ 30356856 (-)
cxcl14 cxcl14 other downstream 2507128 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 2519614 28714863 ~ 28795508 (-)
LOC120566409 limch1 other upstream 63878 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 98667 31419879 ~ 31485976 (-)
tlx2 tlx2,LOC107396138 other upstream 518330 31839542 ~ 31851757 (-)
hopx hopx other upstream 1470169 32791381 ~ 32893558 (-)
slc49a3 mfsd7 other upstream 1640825 32962037 ~ 32979661 (-)

Expression


Co-expression Network