LOC120566876 (LOC104959829)


Basic Information

Item Value
gene id LOC120566876
gene name LOC104959829
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15621014 ~ 15638360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813546.1
AACTGAAAAGGGGCAGTACACACACTCGCTGCCTCACACAGCCAGACCCACCGGAGTACAGGTGGTTCTGGACAAAAATGGACACGGAGAGGAATTAGTTAATCATCTACAGCTGAAGTCTGGTCCGCCAAACAATAACATTTTTTTACAGACTGGGTGAACGATCAGAACCCAGACATCAAATCTTTCCTACAAggagcaaaacaaacaaactggcaATCTGAATGGTGGAGCTGCCGACCGCAGGATTACTTTATTCGTGATGAATTCTTAGTTGTAGTGTGCCGATGCATTTCAGTATTGATCAAAACTACCACCAGAAGAAATAAGAACTTTCCTTCTCAATTGTGGTTTTGCGAataaacaaaagaacaaaattGAGCATCCTTCCTTTAGAGGCTGTGTCTGGCTTTAATGTATAAGAAATAACACAGAACACCAGAATAAAGCAACTTGAATTGAATATATTGGAGCTCTGAATACAAAACAGTCTCTGGAATGACCTTTCCAGAGTGCAGTGTTATTCCTCACATGCACCTAACAGCAGGAAGCTGCCATATACACAGTTCCCATTCACGTCACTGTAGAGTTATGATCTCCAAGATAAAGGTCTGATCCTTTTCTCCGAAAGAAAAATAATCTGCGGGCTGGAGATTGGGACACAGACGAAAAGCATGTTTTGGTGACCAAAATAGCCGAGGAGGAAGAGCAACGtctgggaaagaaaaaaaggagtaTTGGAGAGATTCTGGAGAGACTGTTTCTCAGCCCTTTTTGCCAGATTTTCAACAGACCACAACAAAACTTGTGCAATTTTCTTGGCAGTTGTCCATGGGAACTCATCCAAGGCACATCGGAGCTGACCCTCCTGGGAGGTCCTGTTAGATCAAGAATAATACTTCATGAACACCAAAGTAAGAGCGCACTTTTTCCGTCAAATTTCAGCTGACTGCAGGACAACATTTGGAAGGATTATTGCTGAAAGGGGAGCCAAAACCGGAAGCAGCAACTTGGAAAGCTAAGCTACTCCTTTCCTTgtccatttttgtgtgttttcttgtttttccaAACACATTCACTTCCTGCCAGCAAGGACTAAAACTTTCATCTCCCATCTGGAACGACTGACTGGAACGAAACGCTCACATAGCTCCCTGCCGAGggcttttgttttttgctgCAGCAGAAGCATTTCACCGTGGCGATGGAGATGGAGAAGGGACATACGTCTATCAGGAGAGGAGTGAGCTGGAGTCCAGGAGGATTGAGAAAACCTCTCCAGgcaacacaaaacatgcacactcCTGGGACAGAGTGCAATGCATCACGGGAGACAACAGGATTCAACAAAGAACAGATGAGCCGGAAAACAAATCTGACCAGGAGCGCCAGTTTATCAGACAAGGAGCTAAAGGAGGCTCGTGTCAGGAGTCAGATCATCGCTGCACAGCTCACCGTCCCTTCCAACTCCACCTCCAGAGGCGTGCAGCTCTTTAACCGGCGCAAGCAAAGGGTCAGCGCCTTCACGCTCGAAAGCTGTGGAGAGGGGTCAGGGGAGAGCAGAGCTGAGAATGTGAAAACAAACCCCTCATTTAACAAACTAACATGGGCAGAGAGGAGCACTGAGGAAAAGGATAGAGACCTGAACTTTAAGAATAGCGCTACCAAGCCAGTCTTGTCACCACCTGGGAGAGTACATTCAGTGGGTGGTATCATGGAGGAACCAGGTAAGGATTTCTACAAGGAAGACGACATGGAGGACAGTGTTATCCAAGAGAGACATTTCCTCCCTGTCAAGGAagagcaggaggaagaggataATGCAAGAGATAAAATCCATGAGGAGGACAAAGTCAAGGATGAAATTCCCCCTGGAAGTCATTATACTAATCCAGTTCTGATGGGGCATACTGAAGGTGAAGCAGAGCTAAATGGGGGCCACACAGGGCCACTTCCCACTGGAAAGCTTCATAATGGCTGCCACAGTACCTCTGGACCTGAGAGGGTGTCTGTTACCACATCCAAGCAGACAAGCACCATCATCAATCGAACTGCCAGGCCCTTTTTCTCGCCGCTGACGGTGCAGTCTCCAGAGGCAGCCAGCCCGGTCATGGACATTCCCCCTCCTCCTTCTTACAACACTCCTCCTCTCCCTGCTTTCACTGCTCCTCAACCTTTGGCGTTCTCACCTCCACCTCCGCCTCCGTCATATCCCACACCTCCTCTACCGGCCTTTACAAGCCAACCCCCGGAGGCCTACTACTCCAGTCCACCTCCTATGTCTCCTGTCATGTCTCCTTCCTCACCTCCACCATCTCAGTTCCCTGTGTCTTCTGTATCTCAGTACCCACCCATGCCCCATTATGGCCCTCCCACAGCCCCAAAGCCCTCCACCTTCGTTCCTCAGCCTGCTGGAGAGAGGAAGCCGATAGCACCGATCAAAACGGGAATACTTGAGGAGGGTGCTGCTAGAAGGGGAAGTAGGAAAGCAATGTTCACATTCAAAGAGAAGACGGTGGTGGCTCCGAAccctgagctgctctctctggtGCAGGGGGTGGATGAAAGGAAGAAGCAAGGATGCAGATCTGTGCCTGAGCCAGCATCCGAGGAGGAGTTGCTGGCGCTGGGTGCAGAGGCCTCCAACTTCCTCGCCAAGGAAGAGGACAGGGCAGAGGAGACAAAAGCTCCAGAGTGGGCTTCCTGCCTCAAGACCTCCAGGACTCGTCCGAGGGCAGAGCACAGGCCAGAGCAGACCCTCACCAATGTATCAGGAAAGGGGGCTGAGCTGTTTGCCAAGCGTCAGTCCAGGATGGAAAAATACGTTGTTGAGAAGCAAAATGCAGCACAAATTAGGTCTCCTTCTCCCACCATGTCTCTGCCACCATCTTGGGTGTTTCCGTCAAACATGCCCGGCAGAGTCAAGGCCATTGCTAAAAACTCTGACATGAGTGCTCAGCTTTCACAAACCCTAAAGGCCCAACAAGCAGTCAAGCAAAAACCAAGGGGAAAAGCTCCAGCACCAGAGCCAATTCCAGAGCCGCCTCCTTTAGAAAATGGCTGCTCCAAGATAGAGATGGACCTGTCAAGGCACCAGCCCTACCAGCTTTCCTCTTCCCTCTTCATCCTTAACCCAGCCAAGGACCCCATCAGTACCCTACCCAGAAGAGCACCACAGTCCAAGAGCCTGATATCTACCCAGTCCTTCTCTAGACAGTCTTCCTTACCTAATAATGCTCCTTCTCACTACAGTACCCAGTGTATGTCTCCACAGCTGCCTCTCAGCCCCACAAGAGAAGCAGAATATCCACCAAATCCAGCCTATGGCCAGCCAAGGATCAGCTCTCCTGCCTTTTCTCCAGAGCGAGTGTCCTCTCCTCGGTCAGGGGTCCAGGCACCAAAGCCCACGTTTTCTGCCAAGAAGGCAGGGATTGCCCCACAGACGCCAAAGGAATCCTCCCCAGTTGAAACCCCCAGTGAGACTCCCACGCCAACCAGGACGCCCAGACTCACCAGACGTTTCAGCAGCCCAGAGGGCCCCGCTACTGGGACCTGGACTCCCAGCCTCCAAACTAATCGGCCCTCCACCACCATCTCTAGCCGCTCAGTTACTTCCCCTATATCCTCTCCCAGGGGCGCAAGATGCCAATCCCCAATGGTCAGTCAGAATATCCAATTTTCCCCAGTTACCTCCACTGCAGCATCCAGATCCTCTCAAACATCTGCAGCCACCTCTTCACGCTCTCTTCCTTGGGGTTCAAGATGTCAGTCCCCAATGGTGAGCCAGAGTACCCATTCCTCCAGCATCTCCTCCATTCCTGGTTCCAAACCATCACAAACGTTTACGACTACTtcccctctttctccttcttgGGGTTCAAGATGCCAGTCCCCAATGGTCAGCCAGCATACCCAATTATCCACTGTCACCTCAATGTCCACGTCCAGACCCCCCCAAACATCTACAGCCAcatccccctctcctccttGGGGATCAAGATGCCAGTCCCCTATTGTGAGCCCAAATACCCAGTCTTCCAAAAGTCCCTTTCTTCCTACTTCCAGACCAACCCAAACATCTACAGCCACAtctcctgtctctcctcctTGGGGCTCACGTTCCCAGTCTCCTGCACTCTCTCAGACCAGTTTATCCTTCCCCGCCACTAAACCTCTGTACACATCTTCTGCCACCTCTCCTGTTCCCCCACCCAAAGACAGTCGCTGCATGTCCCCCATTGTTAATAACCCAGACTCTAAAGCCAACCATCGCCTCCTGGCCAAGAACATCATCAATGCAGCCAAACGTAAAAACAGCCCTTCCCCTGGAGCACTGAGCGGTCACAGCCTCCCAATCTCCCCTCTGGGGAATTCCCACCATGGCTACGACTGTCACAAACCACCCATCAGCCCTTTCCAGTCACGGGCATTTGGGGCTCAGTCCCCTACCTTCACCAGCCCTCCTCCAACCCCAACACAGAGGATCTGCTCCCCTGTGAGGCTCTACAACACTCGCTCCCTCACTGACTCTGATGCCTCTGTTGAGTCTGAAGACTCAGGCCTCCGATCGCCTGGCCTGCACTCCTACAACACCTGTCCCCGCGGCTGGGGCGGTAGCCTGAGGGTGAAGAGAACCACCGTCTCCACTGACCTGTGAGGGTGTTTCTGAAAGGCAATCAAGCATGAAATCAGTTTCATAGACTTTTGGGGCATTTGATCAACCAGTAAAGGAGTTTGTGATGGCATTTCATCAGACTAATAGAAAATACCCTTCTGTAACTTTGAATACCGATCCTGGACAATGGTAAACATTGTATCAAGgtagtattagtattttgtaTGACTCACATTCATAGCATGGACTGACAAGGACAAGCTTTTTACATAACGCAGTTGCTGTGGCTTGTACGCTTCTTACATACCATAAAGACTCAAAATACAGTAACCAAAGATTATACACGTTCTACAcctttacaacatacatacattgacAGCCACTGTTCCGGTTAAATAGTGTTTAAGtaaatctgtttttaatgttattaatgaATCATCATTATGATTGCTGGTCTGACGCAAGTCCAAATGGGAAGAGACTTAAAAATGTTAAGGTATAGAAGGGACATATggaatgaataatgtataaatatatatagctCATTGAACTATACAGTAATTTGGTTAAGGAATATTGATTTAGATTCTACTGGGTAAAATGAGTTATTTAacccatgacaaaaaaaacagtggtaGATGGGGCACTTGCTATTCACGTTATCATACATGGTCACAGTATTCACCACAGTTTATTATCCATTTTAATCAATGGGAAATCAATCATATGCATAATTATCGCAGTGCAATATTCAATTTAACACAGCTTATTTTATGTATGTTATATGTTGCTTTATGTACTGCATTTGCTAAAACGAATGTAATCTTTACAGACAGATTGACAGAGAATGAGATGAAGAGATGACGAGATGAAGAGTTGTGTGTGGAGGTTCGATGGGGCATTGACGCACCTGTTCAAACACTGTTTCCATGATTCAGGAGAAAGAAAGAttccaaagttttttttgctgAAGTTTAAATATTGATGAACAATTCAAAGAACAAATATTAGCTGTCAATGTGCAAATGAAATGGCATATTGATTGCAGCATTCATATTGGTGGTTAATGTTTGTATGCCTAAGTTTAAGTGTTGTCGCTTTTGCTGACCACCTGTAATGTCTTTCATGAGGAACAGATTAACATATTTTGTGCCTGTACTTATTGTACAAATTGCCTATTTGGATGAGGTTTAGGAGCAAATGCGTATGTACTGTAAGAGAAGGTACAACAAAACGTTGTTGAAAAAAGGTTAGAAGAATGTATGTTGTGAAGTATTAATCTGTGTTTTTGAGAAAATGATAAGAGGAAtggattgtattttaaatacatatcTCTAATGTACATTCTCTTTAACTTCTGAAGTTTCTTTTTATAATTGATTTGCACTTCTGTTCATTCCATTTCAATGGCTAAATTGGCATTGTTTCAAACTTAATTTGTCATTCACAATAAAACCAGCAAATAATTATCCAAATAATATATTATTGCACAATTCAATACCTTTATGGTGGCAATTAGCTGTAAATCTGGCTTGTAGCCTTCAAACCACATCTGGCTTTCTGTTTACACCATTCTCATTTTGCCCAGTCCTGTACCAGCACACACAACAGGTTATTCCTTCACTCCTTGACATCCATGCCAAAAGCATCAGCACATTTCTCAATATTTACTTCTGTGTGTCTTTTGAGTGACAGGGACACCTGCTACATGGTGACCTGGCTCCTTCAGCAGGATTAAGTCTATTACTGTCATGGATTGGTTTCAACCTGTGTCTCCTCTGGACAAACCAAACACAGCTGAAATCCTCACAGAACAGAACATAATCATTGCATTTTTTGAGTTTTGCATGCAGGATTTTTCTGGGGTGGGTTCTGTGATTGCATGccagcattttattttcaaaacagCCAATTTTTCTCTCAATTCATAACTGTATGATGTATGAAAATGAATGCTAAATAAAGAGTGATGACACACCAATTCAAataatgta

Function

NR:

description
PREDICTED: synaptopodin 2-like protein

GO: NA

KEGG:

id description
K21112 SYNPO; synaptopodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813546.1 True 6609 mRNA 0.46 4 15621014 15638360

Neighbor

gene id symbol gene type direction distance location
ctnna1 ctnna1 coding downstream 104254 15441419 ~ 15516760 (-)
sncb sncb coding downstream 471085 15135126 ~ 15149929 (-)
LOC120567479 NA coding downstream 488860 15127898 ~ 15132154 (-)
nek12 NA coding downstream 567764 15050136 ~ 15053250 (-)
drd1a drd1,LOC103470866,LOC103144507,LOC106953475 coding downstream 588746 15028908 ~ 15032268 (-)
dctn4 dctn4 coding upstream 33275 15671635 ~ 15688818 (-)
tnip1 tnip1,LOC103376067 coding upstream 59977 15698337 ~ 15715960 (-)
anxa6 anxa6,LOC102795126 coding upstream 78881 15717241 ~ 15729319 (-)
rmnd5b rmnd5b,LOC103391242 coding upstream 145442 15783802 ~ 15791552 (-)
hbegfa LOC104968122 coding upstream 212134 15850494 ~ 15854036 (-)
G105149 NA non-coding downstream 50934 15569818 ~ 15570080 (-)
G105147 NA non-coding downstream 91755 15527066 ~ 15529259 (-)
LOC120567002 NA non-coding downstream 184081 15205133 ~ 15436933 (-)
G105113 NA non-coding downstream 257073 15363636 ~ 15363941 (-)
G105110 NA non-coding downstream 289875 15330925 ~ 15331139 (-)
G105217 LOC103376071,LOC104959352 non-coding upstream 113094 15751454 ~ 15755017 (-)
G105230 NA non-coding upstream 189931 15828291 ~ 15828491 (-)
G105241 NA non-coding upstream 242003 15880363 ~ 15889068 (-)
G105243 LOC103365697,LOC106906325 non-coding upstream 251797 15890157 ~ 15892250 (-)
G105247 NA non-coding upstream 257897 15896257 ~ 15896732 (-)
tspan17 tspan17,LOC103361971 other downstream 1906 15598343 ~ 15619108 (-)
G105086 NA other downstream 486278 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 512416 15089404 ~ 15108598 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other downstream 881521 14735192 ~ 14739493 (-)
uvssa uvssa,LOC104961899,LOC106533076 other downstream 1047521 14537100 ~ 14573493 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 227700 15866060 ~ 15871949 (-)
unc5a unc5a,LOC102788949 other upstream 321837 15960197 ~ 16103794 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 885996 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 1319283 16957643 ~ 16963536 (-)
tmsb1 NA other upstream 1503722 17142082 ~ 17151616 (-)

Expression


Co-expression Network