ergic1 (ergic1)


Basic Information

Item Value
gene id ergic1
gene name ergic1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 16395235 ~ 16414331 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813550.1
AATCGGCATTTGCAAAGCGTCCTAAGCTGACGTCAGCCCGGTACCGATGAACAACCGGTAGCGTTGAAGAGAGCTGTGTGTGATAGCCCGTTGTTTGTAGCTTTGTCCGCTCATACCCCCTGTCTAACGTGCAAACATCATGCCTTTCGATGTAAGGAGaTTCGATATCTACAGGAAAGTGCCAAAAGATCTCACCCAGCCCACATACACGGGAGCTTTCATTTCCATCCTCTGCTGTGTCTTCATACTCTTCTTGTTCCTGTCTGAGCTGACGGGATTCATAGCCACAGAAATTGTAAATGAACTGTATGTGGATGATCCTGATAAAGACAGTGGTGGGAAGATAGAAGTGAGTTTAAACATCAGTTTGCCAAACTTACACTGTGATTTGGTGGGTTTGGACATCCAGGATGAGATGGGCCGCCACGAGGTCGGTCACATAGACAACTCCATGAAGATCCCTCTCAACCAGGGTGACGGTTGTCGCTTTGAGGGAGAGTTCACCATCAACAAAgtgCCAGGAAACTTCCATGTGTCGACACACAGCGCTACAGCGCAGCCCCAAAGCCCAGACATGACCCACAACATCCACAAGCTGGCCTTTGGAGAAAAGCTCCAGGTACAAAAAGTACAAGGAGCCTTCAATGCGTTAGGAGGGGCTGACAGGCTGTCATCTAATCCTCTGGCCTCACATGACTACATACTGAAGATCGTTCCAACAGTGTATGAGGACCTATCAGGGAAACAGAGGTTCTCCTACCAGTACACGGTAGCCAATAAGGAGTACGTTGCTTACAGCCACACGGGCAGGATCATCCCAGCCATCTGGTTCCGATACGACCTCAGTCCAATCACAGTCAAGTACACAGAGAGGAGACAGCCCTTCTACCGCTTCATCACGACAaTCTGTGCCATCGTCGGCGGGACGTTCACAGTCGCAGGAATCATCGACTCCTGTATTTTCACCGCTTCAGAGGCCTGGAAGAAGATCCAGATTGGGAAAATGTCATGAGGACCGCTCCCCACTCCTCCCTACATCGTATTTATATAAGTGCAAAGTTGTTAGCCTGTTAGCTAAATCCAGTCCTGCTCGAACCCACTTCCTTTTGGAGATTCTATCAGCGTGATCAGTGAAGTGGCTCCGGCACTCGATCTAACTACCAGGCTGCACGGCTGCGTCTCAGTTTCTTAAGCTCCACTCGGGGCTCAATCTGCCCTGGTGACGCCGCTGACTATCACATGTCTGCTTCCTCCGTCTTCAGTGTCTTCAGTCTTTTGTTACTGTGGAGATGAAGTACTGCGTGGCAGGGTTAAACCTGTATGGGTATTTGAAGGCtgcacctgtgttttttttttttttttttaagaatttcatTCAACACAAATCGCATATATTCAATTTATAGGGATATTTTCAAGTTATGGCTCAATGATTAACAGGCAACAAGACATAACTAATTGTTTATATGAATAAAAAGGTTAATTTCTGTCAGTACATGCAGTAATATCGGTCTAACCATACTGCGCTTGTTTCCCCAGTACCGCAAAAGGGGAATGATCATTTGAAGGAAGTGTTCTGGTTTATAAAACTGGACTTTAAAGTATTTCTGTAATTTACacttaataaatacataaatcatgttacgttattttttttcagaCCTTCTAATTTTTATCTCCAGTATTCAAACTGTGTGCCTTTTAGGTTTCCTCTTCTACCAAACAGGGTTACCATCATCATGTATGTTTGTCCACTAAAACCAGTTGCACCTATTGCATGTAACTTACTGTTTAGATTCACTTTTTAAGAGATCATTGTTTACCTTTCAGTCATTGTAGTATACCAAATATTTCACTGTTAAAGGTCCTAGCTTTGACTTTTTCCATTACATTTGAATTACTGCAAAAAATATAgtgaatgtcttttttttctttttctaagaGATCAATTTATttagttacattttatttttttttacacggtacgtgaactttttttttaaatttttttttattgagtttctaTGAAGTTGTAAAGAAAAGATTTGTAAGGAGAGAACCTGTAGGCCAAGGTGTTTTTTCCTCTTCCGTCATTTTATCTTTCTCTTGTACTGTTGTATAAAAGACCTCTCTGATCACAAGCCCTCGGAAACTAGTCTTTCTACTGATAAGGTCATTTACATCCTGTTCTGTCTCAAATGAGTCTGTAATGCTTTGTGTTCCTCAAGTAAAGGTACCATAAAAACCA

Function

symbol description
ergic1 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in neurogenic-type arthrogryposis multiplex congenita-2. Orthologous to human ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1).

NR:

description
PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2

GO: NA

KEGG:

id description
K20365 ERGIC1; endoplasmic reticulum-Golgi intermediate compartment protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813550.1 True 2248 mRNA 0.42 10 16395235 16414331

Neighbor

gene id symbol gene type direction distance location
npy7r LOC104967498,LOC104930063,LOC103356978 coding downstream 65724 16324573 ~ 16329511 (-)
prelid1a prelid1 coding downstream 71858 16316611 ~ 16323377 (-)
fam193b fam193b coding downstream 85819 16298820 ~ 16309416 (-)
LOC120567264 ddx41 coding downstream 97873 16287081 ~ 16297362 (-)
dok3 NA coding downstream 108249 16278315 ~ 16286986 (-)
LOC120567053 LOC103356970,LOC107093447 coding upstream 95027 16509358 ~ 16513111 (-)
gjb1b LOC107093452,LOC101485490,LOC102291952 coding upstream 99230 16513561 ~ 16518060 (-)
LOC120567296 NA coding upstream 103823 16518154 ~ 16526951 (-)
LOC120567142 LOC104959287 coding upstream 115939 16530270 ~ 16533180 (-)
LOC120567144 LOC104923178 coding upstream 118951 16533282 ~ 16537447 (-)
G105337 LOC103356977,LOC104930064,LOC102195804 non-coding downstream 56217 16334273 ~ 16339018 (-)
G105332 NA non-coding downstream 130816 16264201 ~ 16264419 (-)
G105331 NA non-coding downstream 131372 16263231 ~ 16263863 (-)
G105292 NA non-coding downstream 339207 16055583 ~ 16056028 (-)
G105289 NA non-coding downstream 435056 15959119 ~ 15960179 (-)
G105417 NA non-coding upstream 52117 16466448 ~ 16506278 (-)
LOC120567052 NA non-coding upstream 82126 16496457 ~ 16497322 (-)
G105433 NA non-coding upstream 273148 16687479 ~ 16687729 (-)
G105435 NA non-coding upstream 273725 16688056 ~ 16688590 (-)
G105436 NA non-coding upstream 274752 16689083 ~ 16689305 (-)
unc5a unc5a,LOC102788949 other downstream 291441 15960197 ~ 16103794 (-)
hnrnph1 hnrnph1,LOC102791917 other downstream 523286 15866060 ~ 15871949 (-)
tspan17 tspan17,LOC103361971 other downstream 776127 15598343 ~ 15619108 (-)
G105086 NA other downstream 1260499 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 1286637 15089404 ~ 15108598 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 110025 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 543312 16957643 ~ 16963536 (-)
tmsb1 NA other upstream 727751 17142082 ~ 17151616 (-)
frmpd3 frmpd3 other upstream 752565 17166896 ~ 17256932 (-)
nexmifb kiaa2022 other upstream 1107810 17522141 ~ 17577811 (-)

Expression


Co-expression Network