LOC120566929 (clg2h4orf45,LOC104948239,LOC102200624,LOC101472142)


Basic Information

Item Value
gene id LOC120566929
gene name clg2h4orf45,LOC104948239,LOC102200624,LOC101472142
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 30553176 ~ 30555189 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813633.1
ATGCAAAACAGTGAAGCAGCTGCAGGCGGGCCACCACAGCATGGACAAAGGATGATTTTTACAGGCCCAGATGGAATTGGAGACTACAGGCCGAGATCAAATTATTTCCCCCGGTACATCGGTGCGGGTGCCTCATCACCTGAGGCCTCAGGTGACCTCAGTTATTTGTGCCAAGCTACACCCCATGCCCCCCCTCCTACGCCCAAGCAGAGCTATGTGGGGGAGGTTGGCTGGGGCTGGCAGTATAACCAGCTGTTGAACAGTGGGACGCTGCTCAGCAACATGCAAATTAAGAAAACTGAGTTGCGGACAGCGTTGGAGGACAGAGTGACTCACAGGTTCCAGAACCAACAGTAA

Function

NR:

description
PREDICTED: uncharacterized protein C4orf45 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813633.1 True 357 mRNA 0.54 3 30553176 30555189

Neighbor

gene id symbol gene type direction distance location
ppid ppid coding downstream 4769 30537827 ~ 30548407 (-)
pdgfc pdgfc coding downstream 368484 30139809 ~ 30184692 (-)
neil3 neil3 coding downstream 450257 30090948 ~ 30102919 (-)
si:dkey-237h12.3 tenm3 coding downstream 525038 29881190 ~ 30028138 (-)
tdo2a tdo2 coding downstream 678528 29867532 ~ 29874648 (-)
fstl5 NA coding upstream 244048 30799237 ~ 30974285 (-)
anxa5a anxa5 coding upstream 716037 31271226 ~ 31300495 (-)
ccna2 ccna2,LOC101477005 coding upstream 754356 31309545 ~ 31313167 (-)
bbs7 bbs7,LOC102788539 coding upstream 759933 31315122 ~ 31321212 (-)
tmem33 tmem33 coding upstream 767176 31322365 ~ 31332549 (-)
G108722 NA non-coding downstream 150140 30402660 ~ 30403036 (-)
G108718 NA non-coding downstream 165322 30387521 ~ 30387854 (-)
G108702 NA non-coding downstream 270549 30275864 ~ 30282627 (-)
G108600 NA non-coding downstream 776755 29723824 ~ 29776421 (-)
LOC120567321 NA non-coding downstream 802640 29553435 ~ 29750536 (-)
G108772 rapgef2 non-coding upstream 97681 30652870 ~ 30654526 (-)
G108785 NA non-coding upstream 178370 30733559 ~ 30733770 (-)
G108810 qdpr non-coding upstream 447459 31002648 ~ 31004486 (-)
G108828 NA non-coding upstream 575074 31130263 ~ 31131659 (-)
G108840 NA non-coding upstream 619674 31174863 ~ 31175459 (-)
gask1b fam198b,LOC102776406 other downstream 196320 30346978 ~ 30356856 (-)
cxcl14 cxcl14 other downstream 1745182 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 1757668 28714863 ~ 28795508 (-)
LOC120566547 NA other downstream 2514476 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 2529947 28021737 ~ 28023229 (-)
G108777 rapgef2 other upstream 105723 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 114342 30669531 ~ 30670849 (-)
LOC120566409 limch1 other upstream 829901 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 864690 31419879 ~ 31485976 (-)
tlx2 tlx2,LOC107396138 other upstream 1284353 31839542 ~ 31851757 (-)

Expression


Co-expression Network