stx5a (stx5)


Basic Information

Item Value
gene id stx5a
gene name stx5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23315838 ~ 23322957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813669.1
GATTTTCCGTCCCTGTAAAGTAGACGTGGCAGTGACGTCAATGCCGGAAACGACCGGAACTTTAACTCCTGGGTTGATTAGTTTTTACCAGCAACATCGAGGGCTCTCGGAATATGTTGTAATATCGATTGAAACGTGTGTACATATGTCCATGAAGGATACCCAACCTTGTGTTTGAGTTTCCGCACACCGGGAGATCTTCCTATTAATCCATAACACAGAGCAAAGGTAAAGACACGGCAGTTCCAGGTGGTTTCTGGTCTACAGCGGGCTGGTGACCCTTTACCGGCGGCAAGATGACGTGCCGTGACCGGACCGTCGAGTTCCAGTCAGCCTGTAAATCTCTCCAGGGCAGGCCGAATGGAGTCCAGCCCAGTAAACCAATTATTAGCGCTCTCAGGCAGCGCAGTGACTTCACAGTTATGGCCAAGAGAATTGGAAAAGACTTGAGCAATACATTTGCCAAACTGGAAAAGCTCACCATTTtggcaaaaagaaaatctctATTTGACGACAAGGCAGTGGAGATCGAGGAGCTAACGTACATCATTAAACAAGACATCAACAGTCTAAACAAACAGATAGCACAGCTACAGGACTTGGTGAGGTCCCGCGGAGCTCCAGGTGGCCGACACATCCAAACCCACTCTAACACTATAGTGGTGTCTTTACAGTCCAAACTGGCTTCAATGTCCAATGACTTCAAATCAGTCCTAGAAGTCAGAACAGAGAACCTGAAGCAGCAGCGCAGCAGGAGAGAGCAGTTCTCCCAGCCCCCTGTCTCGTCTTCTCCTCTGATGGCCAACAACTTCAggAGCCGAAAAAAAGGGGCCCAGGAGCCGCATGCAGCTCGCGAGCCGCGCAATGGTTACCAGGGCAATACAACCTCAAATTTAAAAGAGAGCTCGGTCCTGATGCAGGATGAGTCCAGGAGTATGGGGGATGTAGCCATCGATATGGACTCTCAGACCAATCCTTTGCAACTCCAGCTTATTGATGAGCAgGACTCATACATCCAAAGCCGTGCGGACACCATGCAGAACATTGAAAGCACCATCGTGGAACTGGGCTCTATATTCCAGCAGCTGGCGCACATGGTAAAGGAGCAAGAGGAGACCATCCAGAGGATCGACGCTAATGTGGAGGACACCCAGCTGAATGTGGAGGGCGCCCATACTGAGATCCTCAAATACTTCCAGTCCGTCTCCTCCAACCGCTGGCTGATGATCAAGATCTTTCTCGTCCTCGTTGTCTTCTTTATCATCTTTGTTGTCTTCTTTGCTTAAAGAAaagaggagcagctgagagaagaggaagagcacATTGAATGAGGGGAAGTGAAACTAAAACTGGACTGAGAAGACATGTCCAGACGACATATTTGAAGGGCAGACTTATCTATCAAAGTGATGGTTTGATAAAGGCTTGGGAGACGCTCGGACTAATAAAGACTTTTCCATTAATACAGACTTTCCGGTTAGTCCCAAGCTACAGACTCTTGATCTTTATTAGACAATTCAGTGAAGAATGAAGATGTCGAACTTTGTCCAAATGAAAGAATAAATTATCTTAAATCCCCACTTTGTATAGAAATGGAGCAAAAACTGCTCAGTATTGTACTTTGACCAATTATTCATAAACATTTAATCAAAATGGCTATAATTTAA
>XM_039813670.1
GATTTTCCGTCCCTGTAAAGTAGACGTGGCAGTGACGTCAATGCCGGAAACGACCGGAACTTTAACTCCTGGGTTGATTAGTTTTTACCAGCAACATCGAGGGCTCTCGGAATATGTTGTAATATCGATTGAAACGTGTGTACATATGTCCATGAAGGATACCCAACCTTGTGTTTGAGTTTCCGCACACCGGGAGATCTTCCTATTAATCCATAACACAGAGCAAAGGTAAAGACACGGCAGTTCCAGGTGGTTTCTGGTCTACAGCGGGCTGGTGACCCTTTACCGGCGGCAAGATGACGTGCCGTGACCGGACCGTCGAGTTCCAGTCAGCCTGTAAATCTCTCCAGGGCAGGCCGAATGGAGTCCAGCCCAGTAAACCAATTATTAGCGCTCTCAGGCAGCGCAGTGACTTCACAGTTATGGCCAAGAGAATTGGAAAAGACTTGAGCAATACATTTGCCAAACTGGAAAAGCTCACCATTTtggcaaaaagaaaatctctATTTGACGACAAGGCAGTGGAGATCGAGGAGCTAACGTACATCATTAAACAAGACATCAACAGTCTAAACAAACAGATAGCACAGCTACAGGACTTGGTGAGGTCCCGCGGAGCTCCAGGTGGCCGACACATCCAAACCCACTCTAACACTATAGTGGTGTCTTTACAGTCCAAACTGGCTTCAATGTCCAATGACTTCAAATCAGTCCTAGAAGTCAGAACAGAGAACCTGAAGCAGCAGCGCAGCAGGAGAGAGCAGTTCTCCCAGCCCCCTGTCTCGTCTTCTCCTCTGATGGCCAACAACTTCAAGAGCTCGGTCCTGATGCAGGATGAGTCCAGGAGTATGGGGGATGTAGCCATCGATATGGACTCTCAGACCAATCCTTTGCAACTCCAGCTTATTGATGAGCAgGACTCATACATCCAAAGCCGTGCGGACACCATGCAGAACATTGAAAGCACCATCGTGGAACTGGGCTCTATATTCCAGCAGCTGGCGCACATGGTAAAGGAGCAAGAGGAGACCATCCAGAGGATCGACGCTAATGTGGAGGACACCCAGCTGAATGTGGAGGGCGCCCATACTGAGATCCTCAAATACTTCCAGTCCGTCTCCTCCAACCGCTGGCTGATGATCAAGATCTTTCTCGTCCTCGTTGTCTTCTTTATCATCTTTGTTGTCTTCTTTGCTTAAAGAAaagaggagcagctgagagaagaggaagagcacATTGAATGAGGGGAAGTGAAACTAAAACTGGACTGAGAAGACATGTCCAGACGACATATTTGAAGGGCAGACTTATCTATCAAAGTGATGGTTTGATAAAGGCTTGGGAGACGCTCGGACTAATAAAGACTTTTCCATTAATACAGACTTTCCGGTTAGTCCCAAGCTACAGACTCTTGATCTTTATTAGACAATTCAGTGAAGAATGAAGATGTCGAACTTTGTCCAAATGAAAGAATAAATTATCTTAAATCCCCACTTTGTATAGAAATGGAGCAAAAACTGCTCAGTATTGTACTTTGACCAATTATTCATAAACATTTAATCAAAATGGCTATAATTTAA

Function

symbol description
stx5 Enables SNAP receptor activity and protein N-terminus binding activity. Involved in several processes, including Golgi disassembly; early endosome to Golgi transport; and regulation of Golgi organization. Located in Golgi apparatus and vesicle.

NR:

description
syntaxin-5-like isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08490 STX5; syntaxin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813669.1 True 1667 mRNA 0.46 12 23315838 23322957
XM_039813670.1 False 1580 mRNA 0.46 11 23315838 23322957

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-115e12.6 LOC105026731 coding downstream 7775 23285319 ~ 23308063 (-)
kcnk4a LOC104959797 coding downstream 33182 23266914 ~ 23282656 (-)
trnaw-cca_12 NA coding downstream 150410 23165357 ~ 23165428 (-)
trnaw-cca_11 NA coding downstream 154379 23161388 ~ 23161459 (-)
trnaw-cca_10 NA coding downstream 154908 23160859 ~ 23160930 (-)
vegfba vegfb coding upstream 5293 23328250 ~ 23344198 (-)
dnajc4 dnajc4 coding upstream 23230 23346187 ~ 23351569 (-)
si:ch211-107m4.1 NA coding upstream 34460 23357417 ~ 23363363 (-)
zgc:153018 LOC104960669,LOC103374078,LOC100705753 coding upstream 41125 23364082 ~ 23368791 (-)
trnaf-gaa_66 NA coding upstream 50979 23373936 ~ 23374008 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 51939 23242037 ~ 23263899 (-)
G107282 NA non-coding downstream 91382 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 134121 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 342078 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 439379 22875496 ~ 22876459 (-)
G107610 NA non-coding upstream 469097 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 876542 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 965192 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 1109044 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 1125164 24448121 ~ 24450769 (-)
rnaseh2c rnaseh2c other downstream 128780 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 138812 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 181053 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 322609 22990987 ~ 22993229 (-)
G107117 NA other downstream 623007 22691160 ~ 22692831 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 561631 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1250484 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1539013 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1940215 25263172 ~ 25264864 (-)
G107989 NA other upstream 1956646 25279603 ~ 25288086 (-)

Expression


Co-expression Network