LOC120566951 (LOC102310073,LOC103356241,LOC104942682)


Basic Information

Item Value
gene id LOC120566951
gene name LOC102310073,LOC103356241,LOC104942682
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22847118 ~ 22855701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813678.1
CAGTTGgagtctgtcagtcagtcattgcACGATGAGCTTGAATGTCCCAGGATTAATAGTGATGGTGCTCTTCTACCTGCTGGTGCTGGGCACCGGCATCTGGGCCTCCATGAAGTCCAGGCGGCTGCAGAAGAGCATGCAGGCGGACCGGACAGAGATCACCCTGCTGGGCAACAGAGGGATTAGCATGGTGGTGGGAGTCTTCACCATGACAGCTACATTTGTTGGAGGGGGCTTCATCGTTGGTATGACAGAGGCAGTGTACACTCCAACCAtgggtctgacctgggctgTCATACCGGTAACAGCAGCCCTGTCTTTCATTGTTGGTGGACTTTTCTTCGCCAAGACGATGAGAGACAAAAAATATGTGACAATGATGGACCCGTTCAAGATCAAGTATGGAAATGCAATAAGTGGAGTTCTGTCTGTGGCACTACTGATATCTGATATAATCTGGGTTACAGGAACTCTAATTGGTTTAGGTGCAACAATGAGTGTGATCCTGGATTTGCCCTATACTGTTTGCATTTGGCTCTCTGCCGCAGTAGCCATCATCTACACACTTCTGGGAGGCCTCTACTCTGTAGCCTACACCGACATCATACAGCTAACCCTCATATTCTTCAGTTTGTGGTTATGTGTCCCCTTCATCCTTATGAATGCCCATTCAACTGACATCACCAAGACTGCTTTCAACTTCACCTACCAGGCCCCCTGGATTGGTTCAGTGGATAAAGAAAGAGCGTGGAGtttcagggtcatgctggctcactgtcacccTGTCATGTCTTACTGGGACTTGAGTAGAACACAGCCATTGgCTTTTGGTAACCTTGGATATCAGGACTTCCACCAGAGGACCCTGTCAGCTGCCTCGTCAGCCACAGCCAGGATCACCTGCTTTATTGCAGCTCCCCTCATCCTCATACTCGGAATCCCATCCATGCTGATTGGAGCAGTCGCAGCATCAACAGACTGGAACACGACTGTGTATGGCTCCCCGTCCCCATACGAGCGTGGAGAGGCCGGTCTGGTTCTGCCCATTGCTCTGCAGCACCTCACACCACACTACATCTCCATCATCGGTATTGGAGCTATAGCTGCTGCCGTGATGTCATCAACGGACTCTGCTTTATTGTCAGCCGCCTCCATCTTCACATCCAACATCTATAAGAACATCCTCAGGACCGAGGCATCAGAGGGGGAGCTCCAGTGGGTAATCCGTGCCACTGTGGTGTTGGTGGGCTTGGCTGGTACAGTGCTCACCTTCCTACACAACAGCATTATGGTTTTCTGGATCCTGGGCTCAGGCATAACCTACACCATCATGTTCCCTCAACTCGTCTGCGTCCTCTTCTTTAACATCTCCAATGGCTACGGCTCCGTCATGGGCTTGCTAGTAGGAGTATTATTGAGACTGCTGAGCGGCGAGCCATCTATAGGGTTGCCTGTTGTTCTCCACTTTCCAGATTGCACTCTTGAGGATGGCATATATGTCCAGCACTCTCCTGTTCAGACGATCTGCATGTTGTCCAACATGTTTGCCACTTTGTTGTTCTCCTCCCTGGCGTCACTGCTCTTCAATAAAGGACTGATTCCTGAGAGGTGGGACGTATTTAAAGTGAAAACTCACAAACCAACCCAGAACCTAATGCTAATGAGCAATGGTACCACAAAAACAGACGAGGAGGAGAAAACTGAAGATCAGAATGAGACTGAATTAATGTTTACTACAAATCAGTAGGATTGAAAGAAAAACGGTTTAATGGGATGCTTACATGTTTTGTATGGTGATATTTTATCACGTCTCTATTTTTATACCAAATACTTTTCTCTTTGTAAAATTATATAGGATGGTGTAAGAATTCATCTCTTGCAACAAGTGCATGTGTTGTGAATGTATAATACTTGCTTTGGCAATGGTAGTCCTGTACTTAGGTACAATTTTGAAGTACTTgttctttacttgagtatttctattttctgttACTTCTACTCCTCTATACTTCAGAGGGcgatattgtacttttta
>XM_039813679.1
CAGTTGgagtctgtcagtcagtcattgcACGATGAGCTTGAATGTCCCAGGATTAATAGTGATGGTGCTCTTCTACCTGCTGGTGCTGGGCACCGGCATCTGGGCCTCCATGAAGTCCAGGCGGCTGCAGAAGAGCATGCAGGCGGACCGGACAGAGATCACCCTGCTGGGCAACAGAGGGATTAGCATGGTGGTGGGAGTCTTCACCATGACAGCTACATTTGTTGGAGGGGGCTTCATCGTTGGTATGACAGAGGCAGTGTACACTCCAACCAtgggtctgacctgggctgTCATACCGGTAACAGCAGCCCTGTCTTTCATTGTTGGTGGACTTTTCTTCGCCAAGACGATGAGAGACAAAAAATATGTGACAATGATGGACCCGTTCAAGATCAAGTATGGAAATGCAATAAGTGGAGTTCTGTCTGTGGCACTACTGATATCTGATATAATCTGGGTTACAGGAACTCTAATTGGTTTAGGTGCAACAATGAGTGTGATCCTGGATTTGCCCTATACTGTTTGCATTTGGCTCTCTGCCGCAGTAGCCATCATCTACACACTTCTGGGAGGCCTCTACTCTGTAGCCTACACCGACATCATACAGCTAACCCTCATATTCTTCAGTTTGTGGTTATGTGTCCCCTTCATCCTTATGAATGCCCATTCAACTGACATCACCAAGACTGCTTTCAACTTCACCTACCAGGCCCCCTGGATTGGTTCAGTGGATAAAGAAAGAGCGTGGAGGTGGATTGATAATTTCTTGTTATTGgCTTTTGGTAACCTTGGATATCAGGACTTCCACCAGAGGACCCTGTCAGCTGCCTCGTCAGCCACAGCCAGGATCACCTGCTTTATTGCAGCTCCCCTCATCCTCATACTCGGAATCCCATCCATGCTGATTGGAGCAGTCGCAGCATCAACAGACTGGAACACGACTGTGTATGGCTCCCCGTCCCCATACGAGCGTGGAGAGGCCGGTCTGGTTCTGCCCATTGCTCTGCAGCACCTCACACCACACTACATCTCCATCATCGGTATTGGAGCTATAGCTGCTGCCGTGATGTCATCAACGGACTCTGCTTTATTGTCAGCCGCCTCCATCTTCACATCCAACATCTATAAGAACATCCTCAGGACCGAGGCATCAGAGGGGGAGCTCCAGTGGGTAATCCGTGCCACTGTGGTGTTGGTGGGCTTGGCTGGTACAGTGCTCACCTTCCTACACAACAGCATTATGGTTTTCTGGATCCTGGGCTCAGGCATAACCTACACCATCATGTTCCCTCAACTCGTCTGCGTCCTCTTCTTTAACATCTCCAATGGCTACGGCTCCGTCATGGGCTTGCTAGTAGGAGTATTATTGAGACTGCTGAGCGGCGAGCCATCTATAGGGTTGCCTGTTGTTCTCCACTTTCCAGATTGCACTCTTGAGGATGGCATATATGTCCAGCACTCTCCTGTTCAGACGATCTGCATGTTGTCCAACATGTTTGCCACTTTGTTGTTCTCCTCCCTGGCGTCACTGCTCTTCAATAAAGGACTGATTCCTGAGAGGTGGGACGTATTTAAAGTGAAAACTCACAAACCAACCCAGAACCTAATGCTAATGAGCAATGGTACCACAAAAACAGACGAGGAGGAGAAAACTGAAGATCAGAATGAGACTGAATTAATGTTTACTACAAATCAGTAGGATTGAAAGAAAAACGGTTTAATGGGATGCTTACATGTTTTGTATGGTGATATTTTATCACGTCTCTATTTTTATACCAAATACTTTTCTCTTTGTAAAATTATATAGGATGGTGTAAGAATTCATCTCTTGCAACAAGTGCATGTGTTGTGAATGTATAATACTTGCTTTGGCAATGGTAGTCCTGTACTTAGGTACAATTTTGAAGTACTTgttctttacttgagtatttctattttctgttACTTCTACTCCTCTATACTTCAGAGGGcgatattgtacttttta
>XM_039813680.1
CAGTTGgagtctgtcagtcagtcattgcACGATGAGCTTGAATGTCCCAGGATTAATAGTGATGGTGCTCTTCTACCTGCTGGTGCTGGGCACCGGCATCTGGGCCTCCATGAAGTCCAGGCGGCTGCAGAAGAGCATGCAGGCGGACCGGACAGAGATCACCCTGCTGGGCAACAGAGGGATTAGCATGGTGGTGGGAGTCTTCACCATGACAGCTACATTTGTTGGAGGGGGCTTCATCGTTGGTATGACAGAGGCAGTGTACACTCCAACCAtgggtctgacctgggctgTCATACCGGTAACAGCAGCCCTGTCTTTCATTGTTGGTGGACTTTTCTTCGCCAAGACGATGAGAGACAAAAAATATGTGACAATGATGGACCCGTTCAAGATCAAGTATGGAAATGCAATAAGTGGAGTTCTGTCTGTGGCACTACTGATATCTGATATAATCTGGGTTACAGGAACTCTAATTGGTTTAGGTGCAACAATGAGTGTGATCCTGGATTTGCCCTATACTGTTTGCATTTGGCTCTCTGCCGCAGTAGCCATCATCTACACACTTCTGGGAGGCCTCTACTCTGTAGCCTACACCGACATCATACAGCTAACCCTCATATTCTTCAGTTTGTGGTTATGTGTCCCCTTCATCCTTATGAATGCCCATTCAACTGACATCACCAAGACTGCTTTCAACTTCACCTACCAGGCCCCCTGGATTGGTTCAGTGGATAAAGAAAGAGCGTGGAGAACACAGCCATTGgCTTTTGGTAACCTTGGATATCAGGACTTCCACCAGAGGACCCTGTCAGCTGCCTCGTCAGCCACAGCCAGGATCACCTGCTTTATTGCAGCTCCCCTCATCCTCATACTCGGAATCCCATCCATGCTGATTGGAGCAGTCGCAGCATCAACAGACTGGAACACGACTGTGTATGGCTCCCCGTCCCCATACGAGCGTGGAGAGGCCGGTCTGGTTCTGCCCATTGCTCTGCAGCACCTCACACCACACTACATCTCCATCATCGGTATTGGAGCTATAGCTGCTGCCGTGATGTCATCAACGGACTCTGCTTTATTGTCAGCCGCCTCCATCTTCACATCCAACATCTATAAGAACATCCTCAGGACCGAGGCATCAGAGGGGGAGCTCCAGTGGGTAATCCGTGCCACTGTGGTGTTGGTGGGCTTGGCTGGTACAGTGCTCACCTTCCTACACAACAGCATTATGGTTTTCTGGATCCTGGGCTCAGGCATAACCTACACCATCATGTTCCCTCAACTCGTCTGCGTCCTCTTCTTTAACATCTCCAATGGCTACGGCTCCGTCATGGGCTTGCTAGTAGGAGTATTATTGAGACTGCTGAGCGGCGAGCCATCTATAGGGTTGCCTGTTGTTCTCCACTTTCCAGATTGCACTCTTGAGGATGGCATATATGTCCAGCACTCTCCTGTTCAGACGATCTGCATGTTGTCCAACATGTTTGCCACTTTGTTGTTCTCCTCCCTGGCGTCACTGCTCTTCAATAAAGGACTGATTCCTGAGAGGTGGGACGTATTTAAAGTGAAAACTCACAAACCAACCCAGAACCTAATGCTAATGAGCAATGGTACCACAAAAACAGACGAGGAGGAGAAAACTGAAGATCAGAATGAGACTGAATTAATGTTTACTACAAATCAGTAGGATTGAAAGAAAAACGGTTTAATGGGATGCTTACATGTTTTGTATGGTGATATTTTATCACGTCTCTATTTTTATACCAAATACTTTTCTCTTTGTAAAATTATATAGGATGGTGTAAGAATTCATCTCTTGCAACAAGTGCATGTGTTGTGAATGTATAATACTTGCTTTGGCAATGGTAGTCCTGTACTTAGGTACAATTTTGAAGTACTTgttctttacttgagtatttctattttctgttACTTCTACTCCTCTATACTTCAGAGGGcgatattgtacttttta
>XM_039813681.1
CAGTTGgagtctgtcagtcagtcattgcACGATGAGCTTGAATGTCCCAGGATTAATAGTGATGGTGCTCTTCTACCTGCTGGTGCTGGGCACCGGCATCTGGGCCTCCATGAAGTCCAGGCGGCTGCAGAAGAGCATGCAGGCGGACCGGACAGAGATCACCCTGCTGGGCAACAGAGGGATTAGCATGGTGGTGGGAGTCTTCACCATGACAGGTGGACTTTTCTTCGCCAAGACGATGAGAGACAAAAAATATGTGACAATGATGGACCCGTTCAAGATCAAGTATGGAAATGCAATAAGTGGAGTTCTGTCTGTGGCACTACTGATATCTGATATAATCTGGGTTACAGGAACTCTAATTGGTTTAGGTGCAACAATGAGTGTGATCCTGGATTTGCCCTATACTGTTTGCATTTGGCTCTCTGCCGCAGTAGCCATCATCTACACACTTCTGGGAGGCCTCTACTCTGTAGCCTACACCGACATCATACAGCTAACCCTCATATTCTTCAGTTTGTGGTTATGTGTCCCCTTCATCCTTATGAATGCCCATTCAACTGACATCACCAAGACTGCTTTCAACTTCACCTACCAGGCCCCCTGGATTGGTTCAGTGGATAAAGAAAGAGCGTGGAGtttcagggtcatgctggctcactgtcacccTGTCATGTCTTACTGGGACTTGAGTAGAACACAGCCATTGgCTTTTGGTAACCTTGGATATCAGGACTTCCACCAGAGGACCCTGTCAGCTGCCTCGTCAGCCACAGCCAGGATCACCTGCTTTATTGCAGCTCCCCTCATCCTCATACTCGGAATCCCATCCATGCTGATTGGAGCAGTCGCAGCATCAACAGACTGGAACACGACTGTGTATGGCTCCCCGTCCCCATACGAGCGTGGAGAGGCCGGTCTGGTTCTGCCCATTGCTCTGCAGCACCTCACACCACACTACATCTCCATCATCGGTATTGGAGCTATAGCTGCTGCCGTGATGTCATCAACGGACTCTGCTTTATTGTCAGCCGCCTCCATCTTCACATCCAACATCTATAAGAACATCCTCAGGACCGAGGCATCAGAGGGGGAGCTCCAGTGGGTAATCCGTGCCACTGTGGTGTTGGTGGGCTTGGCTGGTACAGTGCTCACCTTCCTACACAACAGCATTATGGTTTTCTGGATCCTGGGCTCAGGCATAACCTACACCATCATGTTCCCTCAACTCGTCTGCGTCCTCTTCTTTAACATCTCCAATGGCTACGGCTCCGTCATGGGCTTGCTAGTAGGAGTATTATTGAGACTGCTGAGCGGCGAGCCATCTATAGGGTTGCCTGTTGTTCTCCACTTTCCAGATTGCACTCTTGAGGATGGCATATATGTCCAGCACTCTCCTGTTCAGACGATCTGCATGTTGTCCAACATGTTTGCCACTTTGTTGTTCTCCTCCCTGGCGTCACTGCTCTTCAATAAAGGACTGATTCCTGAGAGGTGGGACGTATTTAAAGTGAAAACTCACAAACCAACCCAGAACCTAATGCTAATGAGCAATGGTACCACAAAAACAGACGAGGAGGAGAAAACTGAAGATCAGAATGAGACTGAATTAATGTTTACTACAAATCAGTAGGATTGAAAGAAAAACGGTTTAATGGGATGCTTACATGTTTTGTATGGTGATATTTTATCACGTCTCTATTTTTATACCAAATACTTTTCTCTTTGTAAAATTATATAGGATGGTGTAAGAATTCATCTCTTGCAACAAGTGCATGTGTTGTGAATGTATAATACTTGCTTTGGCAATGGTAGTCCTGTACTTAGGTACAATTTTGAAGTACTTgttctttacttgagtatttctattttctgttACTTCTACTCCTCTATACTTCAGAGGGcgatattgtacttttta

Function

NR:

description
PREDICTED: high-affinity choline transporter 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813678.1 True 2035 mRNA 0.47 9 22847118 22855701
XM_039813679.1 False 1990 mRNA 0.47 8 22847118 22855701
XM_039813680.1 False 1978 mRNA 0.47 9 22847118 22855701
XM_039813681.1 False 1921 mRNA 0.47 8 22847118 22855701

Neighbor

gene id symbol gene type direction distance location
LOC120567435 NA coding upstream 24088 22815142 ~ 22823030 (+)
LOC120567165 LOC100699826,LOC104947027,LOC103356244 coding upstream 41295 22794685 ~ 22805823 (+)
LOC120567166 NA coding upstream 52910 22789614 ~ 22794208 (+)
zdhhc24 zdhhc24 coding upstream 58399 22784610 ~ 22788719 (+)
pola2 pola2 coding upstream 68954 22770570 ~ 22778164 (+)
ttc9c ttc9c coding downstream 2924 22858625 ~ 22862079 (+)
map1lc3cl LOC103356239,LOC101159112,LOC100701181,LOC102781115,LOC101482496 coding downstream 22096 22877797 ~ 22879471 (+)
LOC120566913 LOC107377419,LOC103374189,LOC100712009,LOC106536320 coding downstream 86761 22942462 ~ 22949531 (+)
LOC120566541 LOC102082053,LOC102202526,LOC101485142 coding downstream 123618 22979319 ~ 22987555 (+)
ccdc88b LOC103366585 coding downstream 142825 22998526 ~ 23039438 (+)
G107149 NA non-coding upstream 23256 22823601 ~ 22823862 (+)
LOC120567160 NA non-coding upstream 121465 22723025 ~ 22725653 (+)
G107073 NA non-coding upstream 215748 22631079 ~ 22631370 (+)
G107050 NA non-coding upstream 431783 22415002 ~ 22415335 (+)
LOC120566464 NA non-coding upstream 450067 22390353 ~ 22397051 (+)
G107161 NA non-coding downstream 954 22856655 ~ 22856868 (+)
G107164 NA non-coding downstream 10267 22865968 ~ 22866201 (+)
LOC120566955 NA non-coding downstream 11378 22867079 ~ 22875098 (+)
G107170 LOC103356238,LOC104934092,LOC105928696,LOC104942686,LOC106516021 non-coding downstream 28376 22884077 ~ 22887891 (+)
G107182 LOC102781801,LOC102213887,LOC101468765,LOC100701998,LOC103374192 non-coding downstream 59593 22915294 ~ 22916077 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 1378291 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 1496140 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 1563889 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 1899703 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 2494951 20351721 ~ 20352167 (+)
G107163 LOC103356264 other downstream 6489 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 48054 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 94894 22950595 ~ 22997038 (+)
G107168 NA other downstream 99271 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 244324 23100025 ~ 23132685 (+)

Expression


Co-expression Network