sncb (sncb)


Basic Information

Item Value
gene id sncb
gene name sncb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15135126 ~ 15149929 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813768.1
TCAGCCGCACCGTGGAGGGGGCCGTCCCTGTTGGAGGAAATCAGCCCGCGGTAGGCCCACCTATAGTGATCATTTGAAAAATATCTCCCATTTAGAGATAGTGTGAGTCGACTGTGCGACGGAATCATAAGGGGACAAGTCGACGGCTATTTGTAAATAGTTATTCGGCCAAGATGGATGTCTTTATGAAGGGTTTGTCTAAAGCGAAAGAGGGGATGGCTGTGGCCGCGGAGAAGACCAAGGAAGGAGTTGCGGTGGCGGCTGAAAAGACTAGAGAAGGAGTTATGTTTGTAGGTAACAAGGCCAAAGACAGCGTGGGCACAGTGGCTGAGAAGACCACTGGAGCCTACGGGAACATTGTCGCTGCCACTGGCCTCGGGAAAAAGGACGAGTTTCCTGCTGACATGAATCCTGAGGAGTACGGGCAGGAGGCCATGGAGGGCCAGGGAGATGCAATGCTGCAGCCAGAAGGGGAGACATATGATGAGTCCCAGCAGGAGAGCCAGGACTACGAGCCAGAAGCATAAAAGCACCAGTCCAAGCCACCAACCAACCAGCAGCACAATAATATTTCtaacaataaaaaggacaaatgCTGAAACCATTACAATTATACCCTgttgcaaaaaaacacaacaaaaagacAAGCATTCCCACTGAAAAATGTTCTTCCTTCAAGACAaaacttttattattatatattgtaaaTGTCATGTTATTAATGTAATGTGTTGAGTGTAGGTATTTATTGAGATGTAGGAGttgtcctctctgtctcatttcCTTGACTCCCTCCCAATGAAATGAGACCAGAGCCAGGGCTAGTGactttgtgcttgtgtgtatctgtatttaaaagaaatgtgcAATAGATGTTCATCCTCTTCCAATGAGACATTGGGAgtgggaaaaaataaatatgtccGGTTGCAAGCAGATATGAAAACAATAATATCCTCCTGAGTGTCGACAATGCCTGTTTGTggattctttccttttttttctgcatttctctGGAAATTTCTTTGAACTTTTTTCaattaagagttttttttttacattgtatctttatagttgctCGTGAAATCATTCCAGTAAATCTGTTAGAAATTGACAGAGtatacatgtttgtgtgtgtgtgtgcgtgtgtttgtgtgtactgaAGATTTTAACAAGTTAAAGTCAATATATTATGTCTTGAAATCATAA

Function

symbol description
sncb Predicted to enable cuprous ion binding activity. Acts upstream of or within dopaminergic neuron differentiation and larval locomotory behavior. Predicted to be active in axon terminus; cytoplasm; and neuronal cell body. Is expressed in basal plate midbrain region; nervous system; pleuroperitoneal region; and trigeminal placode. Human ortholog(s) of this gene implicated in Alzheimer's disease; Lewy body dementia; Parkinson's disease; Parkinson's disease 1; and Parkinson's disease 4. Orthologous to several human genes including SNCB (synuclein beta).

NR:

description
PREDICTED: beta-synuclein

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813768.1 True 1209 mRNA 0.42 6 15135126 15149929

Neighbor

gene id symbol gene type direction distance location
LOC120567479 NA coding downstream 2972 15127898 ~ 15132154 (-)
nek12 NA coding downstream 81876 15050136 ~ 15053250 (-)
drd1a drd1,LOC103470866,LOC103144507,LOC106953475 coding downstream 102858 15028908 ~ 15032268 (-)
nkx2.5 nkx2-5 coding downstream 233836 14898308 ~ 14901290 (-)
ppp2r2ba ppp2r2b,LOC107086445,LOC104946885,LOC100708080 coding downstream 252310 14834054 ~ 14882816 (-)
ctnna1 ctnna1 coding upstream 291490 15441419 ~ 15516760 (-)
LOC120566876 LOC104959829 coding upstream 471085 15621014 ~ 15638360 (-)
dctn4 dctn4 coding upstream 521706 15671635 ~ 15688818 (-)
tnip1 tnip1,LOC103376067 coding upstream 548408 15698337 ~ 15715960 (-)
anxa6 anxa6,LOC102795126 coding upstream 567312 15717241 ~ 15729319 (-)
G105049 NA non-coding downstream 106260 15028350 ~ 15028866 (-)
G105040 NA non-coding downstream 109717 15025016 ~ 15025409 (-)
LOC120567075 NA non-coding downstream 182071 14948393 ~ 14953055 (-)
G105001 NA non-coding downstream 243615 14890593 ~ 14891511 (-)
G104999 NA non-coding downstream 246919 14883859 ~ 14888207 (-)
LOC120567002 NA non-coding upstream 55204 15205133 ~ 15436933 (-)
G105096 NA non-coding upstream 124626 15274555 ~ 15274923 (-)
G105110 NA non-coding upstream 180996 15330925 ~ 15331139 (-)
G105113 NA non-coding upstream 213707 15363636 ~ 15363941 (-)
G105147 NA non-coding upstream 377137 15527066 ~ 15529259 (-)
G105086 NA other downstream 390 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 26528 15089404 ~ 15108598 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other downstream 395633 14735192 ~ 14739493 (-)
uvssa uvssa,LOC104961899,LOC106533076 other downstream 561633 14537100 ~ 14573493 (-)
G104837 NA other downstream 879085 14150492 ~ 14256041 (-)
tspan17 tspan17,LOC103361971 other upstream 448414 15598343 ~ 15619108 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 716131 15866060 ~ 15871949 (-)
unc5a unc5a,LOC102788949 other upstream 810268 15960197 ~ 16103794 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 1374427 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 1807714 16957643 ~ 16963536 (-)

Expression


Co-expression Network