ehd1a (LOC104934092,LOC103356238,LOC105928696,LOC102204816,LOC101482200,LOC100701452,LOC104942686)


Basic Information

Item Value
gene id ehd1a
gene name LOC104934092,LOC103356238,LOC105928696,LOC102204816,LOC101482200,LOC100701452,LOC104942686
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22884085 ~ 22899160 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813774.1
CTGCAAGCGTGTCAGCCTACTTTTTGAGGGGTTCACTGACAGCTGGTTGCTAAGCGAGTTAGCCAACCGCAAAGAGAGCTAGTAGCGGTTATATACTGCCACGTTTCTGTAGTATTAGACGAAATCTAGTTGCCTAACTATTTATGGGGGAGTGTAGTTGGCTATCTTACGTAAACCAACGCCAGCTGAAGAGGGAGTCCTCCCTGAATGACTGACTCGTAGTGTGTGGCTAGCTAGCGAAGAGGAGGGTGGGGACAAAACCTTTCAAGACCTCGCCCAGCCGTTGCTTCATTCCAGCAGGCAGCTACTCTCTTGACGGTGTGAGAGATCCACGCCACAAAACCAGATAATTATTCAAGGGGAGACTGACACAGTTGTGTCAACTAAGGGCAGAAATAAGTAATCATGTTCAGAAAAAACTTGAAGAAGGACCCCGAGCTGTTTCAGAACGTGTCGGAGGGGCTGCGGCGACTCTACCGGACCAAACTGTTCCCGCTAGAGGACACGTATCGATTTCACGACTTCCACTCCCCTGCACTCGAAGATGCCGACTTCGACAACAAGCCCATGGTCCTCCTTGTGGGTCAGTACTCCACCGGGAAGACCACCTTCATCCGGCACCTCATGGAACAGGACTTCCCCGGTATGCGCATTGGCCCCGAGCCGACAACTGACTCTTTCATCGCGGTGATGCACGGCGAACAGGACGGGGTGATACCGGGTAATGCTCTGGTGGTCGACCCCAAGAAGCCCTTCCGCAAACTCAACGCCTTTGGCAACGCGTTTCTCAACAGGTTCATGTGTGCCCAGATGCCTAACCCCGTCCTGGAGAGTATCAGTATCATCGATACCCCTGGAATCCTGTCCGGAGAGAAACAGAGGATAAGCAGAGgtTACGACTTTGCCGCGGTGCTGGAGTGGTTTGCAGAGCGCGTGGACCGCATCATCCTCTTGTTCGACGCCCACAAGCTGGACATCTCGGACGAGTTCTCCGAGGTGATCCGAGCTCTGAAAAACCACGAGGACAAAATGCGTGTGGTGCTGAACAAGGCGGATCAGATCAGCACTCAGCAGCTGATGAGGGTCTACGGAGCGCTGATGTGGTCTTTGGGAAAAATCATCAACACGCCGGAGGTTGTGCGTGTGTACATTGGGTCGTTCTGGGCCCAGCCCCTGTTGGTCCCAGACAACAGGAAGCTGTTTGAGGCAGAGGAGCAGGACCTGTTCTTAGATATCCAGTCGTTGCCACGTAACGCCGCTCTACGCAAACTCAATGACCTCATCAAACGAGCACGCCTTGCCAAGGTACAGGCCTACATTATCAGCTCTCTGAAAAAGGACATGCCAAGTGTGTTTGGAAAGGAATCCAAGAAGAAGGAGCTGATAGCCAACCTGGGAGAAATCTACCATAAGATCGAGAAGGAGCACCAGATCTCACCTGGAGACTTCCCCAACCTCGCCAAGATGCAGGAGCTGCTGAATGGCCAGGACTTCTCTAAGTTCGCAGCGCTGAAGCCAAAGCTGCTGGAGGCGGTGGAGGACATGCTCGCCAACGACATTGCACGTCTCATGGCGATGGTGCGCCAGGAAGAAGCCGCCATGCCCAGCCAGTCCGTCAAGGGTGGAGCCTTTGAGGGAACCATGAATGGTCCCTTTGGTCATGGCTATGGAGAGGGTGCCAGCGAAGGCATCGATGAGCTGGAGTGGGTGGTGGGTCGTGACAAGCCTACATATGATGAGATCTTCTACACCCTCTCACCCATCAACGGCAAAGTGTCCGGCGCTGCAGCCAAGAAGGAGATGCTGAAGTCCAAGCTGCCCAACACGGTCCTGGGAAAAATCTGGAAGCTAGCAGACGTGGATAAAGATGGCCTCCTCGATGATGAGGAGTTCGCCCTGGCCAACCACCTGATCAAAGTGAAGCTGGAGGGTCACGAGTTGCCGCCCGCGCTGCCTGAACACCTGGTGCCACCGTCCAAACGTGGGACAGCCCTGGAGGcctagaggaggaggaggaggaggaggaggaggaggggcagCCTGGAGACTAGCCATGTCAATGCTTTTGCATCATGTTTAGGACTCTTCAGACAAATGTCCAACCACAAGCATGAACAGCATCATCCTCCATCGAGCTGTGAGTCTCCAGGCTTCCTGACACACCATGAGGAGGTATCGCTGTGATCGTTTTCAccagagagagactggaggggaggtgggaggggaggggaggggggagggtcCATCTTTGTGCATTAGGGAATAATATTTAGGTATCTGTTAGAAATAAATGAGTGAGGTTGATTTGCAAATGGATGAAAGGACATTACCGGATCATGAACTGATGGGTAGTTGGAAGTCGCATGATGGGGCTGAACATGGATTTGTGCATCCTGTGTAAAAGATGTCTTCTAAGTATACAGTCCATATTATTATATGTTGATCCAAAGAAATATagttttctttttccatttggagagagagagaggaaataaataaaaacagctattataattgtgtcatctatatttttgtatttcctgACTGTTAACTTGGACTTTCCAAATGCttccctttttattattttgccaGGTAAATAAAAAGGAATACTGTACCATCTGA

Function

NR:

description
EH domain-containing protein 1-like

GO: NA

KEGG:

id description
K12483 EHD1; EH domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813774.1 True 2622 mRNA 0.51 6 22884085 22899160

Neighbor

gene id symbol gene type direction distance location
si:ch211-168f7.5 LOC103356264,LOC104942684 coding downstream 9303 22862148 ~ 22874782 (-)
dpf2l dpf2 coding downstream 43516 22830410 ~ 22840569 (-)
LOC120567161 NA coding downstream 100868 22778405 ~ 22783217 (-)
slc16a2 slc16a2 coding downstream 141014 22718894 ~ 22743071 (-)
tsc22d3 LOC103390732,LOC104954424,LOC101161414,LOC103356417,LOC102306956,LOC102786303 coding downstream 475874 22375266 ~ 22408211 (-)
si:ch211-114c17.1 LOC103374192,LOC100701998,LOC102296932 coding upstream 10997 22910157 ~ 22918782 (-)
ganabb ganab coding upstream 20684 22919844 ~ 22934564 (-)
ints5 ints5 coding upstream 35860 22935020 ~ 22940305 (-)
LOC120566540 NA coding upstream 42776 22941936 ~ 22945928 (-)
scyl1 scyl1 coding upstream 51384 22950544 ~ 22963954 (-)
G107215 NA non-coding downstream 7626 22875496 ~ 22876459 (-)
G107160 NA non-coding downstream 27739 22856125 ~ 22856346 (-)
G107102 NA non-coding downstream 165315 22713037 ~ 22718770 (-)
G107097 NA non-coding downstream 198627 22683733 ~ 22685458 (-)
G107072 mid2 non-coding downstream 278417 22601140 ~ 22605668 (-)
G107220 NA non-coding upstream 29694 22928854 ~ 22973760 (-)
G107282 NA non-coding upstream 270988 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding upstream 280532 23179692 ~ 23181717 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding upstream 342877 23242037 ~ 23263899 (-)
G107610 NA non-coding upstream 892894 23792054 ~ 23792502 (-)
G107117 NA other downstream 191254 22691160 ~ 22692831 (-)
G107015 NA other downstream 764018 22119685 ~ 22120067 (-)
G106988 NA other downstream 1093360 21790253 ~ 21790725 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 1696432 21178852 ~ 21187653 (-)
G106728 mif other downstream 1753115 21127838 ~ 21130970 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 91827 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 193405 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other upstream 230549 23129709 ~ 23134785 (-)
rnaseh2c rnaseh2c other upstream 285032 23184192 ~ 23187058 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 985428 23884588 ~ 23988901 (-)

Expression


Co-expression Network