pdzd11 (pdzd11,LOC106604732)


Basic Information

Item Value
gene id pdzd11
gene name pdzd11,LOC106604732
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23869142 ~ 23878676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813777.1
ATGTATTAATGTTTACTCCGTTTGCGTACGCGCTCTTCTTCGCCCTCCATTGTCTAGCACACACGAGCAGACGATGTGCAACAGCGCCCTCTGCGGTCACACTTCCTGATGGGTCACAGCTTACGGCATTGTTTTTAGAAACAATGGATCAGAAGATTCCCTATGATGACTACCAGCTCCCAGTGGTATTCCTGCCTTCTTATGAGAACCCACCAGCATGGATAGCCCCACAGGAGCGGGTTCTTCACCCTGACTACAACAATGAGCTCACCCAGTTCCTGCCCCGTACCATTGTATTAAAGAAACCTCCAGGAGCACAGCTGGGCTTCAACATCCGTGGGGGCAAGGCATCACAGTTGGGAATCTTTATATCCAAGGTGGTTCCAGACTCAGATGCCCACAGAGCAGGGCTGCAAGAGGGAGACCAGGTTCTTTCTGTGAATGAGGTTGATTTCCAAGACATAGAGCACTCAAGAGCTGTAGAGATTCTGAAGACTGCCCGAGAAATACTGATGAGGGTTCGCTTCTTTCCTTACAACTATCAACGGCAGAAGGAGAGGACTGTACATTAGGTGGCAGCAATGAGAGAGTTGGACAGCCGCGGCACTGCACGTCATTTCCCTTCCTCCTACAGACTctggcttcctgtctgtctcagcTTCAAGATAACTGATGTATGACAACTGACGTATGACTCAGCCTCATTCAAAGTGCTCCATGTAAGAACAATATACTCTGTTAAATATTGGTTTCCTCTCTCACCCAGATATCTGAGGGCTCCCTTATCTACTCTGATACATGATTTCTACTCCAACAGGATGTATTCACAGGGAGTGAAGGGAGTTACCGTATAAGCATAAGctcaatatacatacatatatatttcaCATTATAAATTATGGAACTGATACCTATTTTTCTATTCAAGCATAGCATTTATAGACCCTGAATACTTTAATAAGGCATTGCctttattcatttttctttaAGTCCTATAATAAGATGTTTCTACTGTTGTCCTAGACATATTTTGATCAAATACAGAGTAGCGCTCATGTGTACTGTACACATTTGCCTTGATGACACTGATATAAagtagagacacacatacactcagttGTTAGtaggggtggaacggtacacAGAAGTCACAGTTCGGTTCAGACATCACGGTTTGGTACGAGTTTGGTACAATGGAGGGAAAAGCAAAAATGCAGAaggcaatttttattttatttttgtgcatgtttcaggctgtaccacctagtgtcatacagtctctcccctgagctagctgcaacagcctgaagtgtgtaaagtaagatgtaaacaataagtaccccacatcatctccagactccatctgtaactgtaaagacaatcggctataaaactgaaaatacagcatCTCTGTTTTCTGCAAAGATTAACTAAATTacctgattaatgcaacgttATCACAACGTCTCCCAGCCATTTTTCACCACAGAAAGCTGCTCCCTGCCTGGCTAAAGCTAATATAGTTAGCCTTAAGAAACAAGGCGTCTGTCCCAACTAACGTTACGGTTCGGAACCGCAACGCTGGAAAGGTAATACTAATCTACAACAGCAGTCTGTGTATAAAATAACGTAATTTACACTGATTTAAGTGTTCTTGGATACACAGTTTGTTGCTTGTTCtctgggtgatggcgtcggatatgcgttagcatgttagatgtagttccactcacatacccaacaacgCCGACtcacagtcctcgtcttatccaccactctctcgcctgtagcctactactggaactgacTGGGAAACcaaagttttcccaaacttgTGATCATAAAGAGGCCGGCGGTTCCTCTAACTCTTGTGGGTCgccaccactcgccatactcGTCCTTAGTActgctatctctgactcactcactggactGTCGACCTGACAAGGTGGAGCTCAGCTACATAGGCGCCAATCAGAGCTTCAGAGCTAGGGCGGGGCTACAGATTAGGTGTCCCTAAAGAACCCGCGTATCTAACGCacaatttccaccaactgcggaacggctgcagATCCGCTCCGGAGCGGCGGCGGAGTCAacaggtttccattaaagtcaaagtgtgtattttcactgactgcggaacggctgcattccgactccgtcccagctctggcgagcttctatttttgccggatgcCGGAAAGCTCCGCAGCAGTTCAGCACAGGGCAgattgtgcgggacaggaagtcaagcacagaagcaaaataaaacatctggttaattttcaaaataaaatacatttatataaacTACATCCTGTTATATCGGGCAATCCTACGTGAAATCGcaagatctcgtgggtcctcgtgacttcagctgtcagtcattaCATCAGCTCAGCAATATATCCAACCATCATGAAATATATAATGTTCAGATTTTTGTTTAAAACTGTTTGATGAAATCATTTCAACTCAAGATCCACTTACTGACTTTTCCTGGAGCTTTCAACTGCAAATCACAGCTCTGTTTTTTTCTAATGTCTCTTATATtaactggcaactgagtgtatGTACTTTACatgtaaaacattttacatATTACTTGGATTTACAGAGACAGCAGGGCCTTACGTACTGTAAGAGCAAATGATAATGCAAGACTTCTGGTACATGTAAATATCACTGATTTAAATATCTCAATATATATCcagtttttaaatatttaacaaaTTTATAATTATTTAGGGAAATTAAGTTGTGTAAATGTAGTTTAGAGACAGCTATTGTGGGCTGagtgtttattaaatactgAATACTCAAATCTTGTTCATGTTTCATACATAACCTGCTTCTAGGCTGGATGATATTGTAATTATTGTATGAACTGTATATTTTAGGTGCCAAACTGTTGACAAGTATAACTTCTACCATGCTATTACAGTGCATGATAACGGCACACTGTGCCCTAGCTCTTAGTGTAATGATAAAGTCTGTAATGTTTATCTGTGTGCAGTAGAGACCCTGATGCTAGCAAGATTtcttgagagagaaagaaaatgtgCACACTTAACATTTACAGAAAACAGTTGAATAGCTCTGGGCTGTGCAGTATACagtaaaatgtgtgtttgtatgcaaaTACCTGCCTGTTGCATCTCAACACTGTTCTATTCTTTTGTACACTAATAAACTTTTGAACCATAA
>XM_039813778.1
GCCAGCAGGTGGCGGTAGTGCACTGGAGACCAGCCACCGTTCGTTTAATAAGAAAAAGGGCTTGTTGTTAGCCTACACTTCAGCTTCAGACTGGCAGGCATTGTTTTTAGAAACAATGGATCAGAAGATTCCCTATGATGACTACCAGCTCCCAGTGGTATTCCTGCCTTCTTATGAGAACCCACCAGCATGGATAGCCCCACAGGAGCGGGTTCTTCACCCTGACTACAACAATGAGCTCACCCAGTTCCTGCCCCGTACCATTGTATTAAAGAAACCTCCAGGAGCACAGCTGGGCTTCAACATCCGTGGGGGCAAGGCATCACAGTTGGGAATCTTTATATCCAAGGTGGTTCCAGACTCAGATGCCCACAGAGCAGGGCTGCAAGAGGGAGACCAGGTTCTTTCTGTGAATGAGGTTGATTTCCAAGACATAGAGCACTCAAGAGCTGTAGAGATTCTGAAGACTGCCCGAGAAATACTGATGAGGGTTCGCTTCTTTCCTTACAACTATCAACGGCAGAAGGAGAGGACTGTACATTAGGTGGCAGCAATGAGAGAGTTGGACAGCCGCGGCACTGCACGTCATTTCCCTTCCTCCTACAGACTctggcttcctgtctgtctcagcTTCAAGATAACTGATGTATGACAACTGACGTATGACTCAGCCTCATTCAAAGTGCTCCATGTAAGAACAATATACTCTGTTAAATATTGGTTTCCTCTCTCACCCAGATATCTGAGGGCTCCCTTATCTACTCTGATACATGATTTCTACTCCAACAGGATGTATTCACAGGGAGTGAAGGGAGTTACCGTATAAGCATAAGctcaatatacatacatatatatttcaCATTATAAATTATGGAACTGATACCTATTTTTCTATTCAAGCATAGCATTTATAGACCCTGAATACTTTAATAAGGCATTGCctttattcatttttctttaAGTCCTATAATAAGATGTTTCTACTGTTGTCCTAGACATATTTTGATCAAATACAGAGTAGCGCTCATGTGTACTGTACACATTTGCCTTGATGACACTGATATAAagtagagacacacatacactcagttGTTAGtaggggtggaacggtacacAGAAGTCACAGTTCGGTTCAGACATCACGGTTTGGTACGAGTTTGGTACAATGGAGGGAAAAGCAAAAATGCAGAaggcaatttttattttatttttgtgcatgtttcaggctgtaccacctagtgtcatacagtctctcccctgagctagctgcaacagcctgaagtgtgtaaagtaagatgtaaacaataagtaccccacatcatctccagactccatctgtaactgtaaagacaatcggctataaaactgaaaatacagcatCTCTGTTTTCTGCAAAGATTAACTAAATTacctgattaatgcaacgttATCACAACGTCTCCCAGCCATTTTTCACCACAGAAAGCTGCTCCCTGCCTGGCTAAAGCTAATATAGTTAGCCTTAAGAAACAAGGCGTCTGTCCCAACTAACGTTACGGTTCGGAACCGCAACGCTGGAAAGGTAATACTAATCTACAACAGCAGTCTGTGTATAAAATAACGTAATTTACACTGATTTAAGTGTTCTTGGATACACAGTTTGTTGCTTGTTCtctgggtgatggcgtcggatatgcgttagcatgttagatgtagttccactcacatacccaacaacgCCGACtcacagtcctcgtcttatccaccactctctcgcctgtagcctactactggaactgacTGGGAAACcaaagttttcccaaacttgTGATCATAAAGAGGCCGGCGGTTCCTCTAACTCTTGTGGGTCgccaccactcgccatactcGTCCTTAGTActgctatctctgactcactcactggactGTCGACCTGACAAGGTGGAGCTCAGCTACATAGGCGCCAATCAGAGCTTCAGAGCTAGGGCGGGGCTACAGATTAGGTGTCCCTAAAGAACCCGCGTATCTAACGCacaatttccaccaactgcggaacggctgcagATCCGCTCCGGAGCGGCGGCGGAGTCAacaggtttccattaaagtcaaagtgtgtattttcactgactgcggaacggctgcattccgactccgtcccagctctggcgagcttctatttttgccggatgcCGGAAAGCTCCGCAGCAGTTCAGCACAGGGCAgattgtgcgggacaggaagtcaagcacagaagcaaaataaaacatctggttaattttcaaaataaaatacatttatataaacTACATCCTGTTATATCGGGCAATCCTACGTGAAATCGcaagatctcgtgggtcctcgtgacttcagctgtcagtcattaCATCAGCTCAGCAATATATCCAACCATCATGAAATATATAATGTTCAGATTTTTGTTTAAAACTGTTTGATGAAATCATTTCAACTCAAGATCCACTTACTGACTTTTCCTGGAGCTTTCAACTGCAAATCACAGCTCTGTTTTTTTCTAATGTCTCTTATATtaactggcaactgagtgtatGTACTTTACatgtaaaacattttacatATTACTTGGATTTACAGAGACAGCAGGGCCTTACGTACTGTAAGAGCAAATGATAATGCAAGACTTCTGGTACATGTAAATATCACTGATTTAAATATCTCAATATATATCcagtttttaaatatttaacaaaTTTATAATTATTTAGGGAAATTAAGTTGTGTAAATGTAGTTTAGAGACAGCTATTGTGGGCTGagtgtttattaaatactgAATACTCAAATCTTGTTCATGTTTCATACATAACCTGCTTCTAGGCTGGATGATATTGTAATTATTGTATGAACTGTATATTTTAGGTGCCAAACTGTTGACAAGTATAACTTCTACCATGCTATTACAGTGCATGATAACGGCACACTGTGCCCTAGCTCTTAGTGTAATGATAAAGTCTGTAATGTTTATCTGTGTGCAGTAGAGACCCTGATGCTAGCAAGATTtcttgagagagaaagaaaatgtgCACACTTAACATTTACAGAAAACAGTTGAATAGCTCTGGGCTGTGCAGTATACagtaaaatgtgtgtttgtatgcaaaTACCTGCCTGTTGCATCTCAACACTGTTCTATTCTTTTGTACACTAATAAACTTTTGAACCATAA

Function

symbol description
pdzd11 Predicted to enable protein C-terminus binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to be located in cytosol. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Orthologous to human PDZD11 (PDZ domain containing 11).

NR:

description
PREDICTED: PDZ domain-containing protein 11 isoform X2

GO: NA

KEGG:

id description
K24061 PDZD11; PDZ domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813777.1 True 3210 mRNA 0.42 6 23870858 23878676
XM_039813778.1 False 3182 mRNA 0.42 6 23869142 23878676

Neighbor

gene id symbol gene type direction distance location
tex11 NA coding upstream 98954 23760077 ~ 23770188 (+)
lnx2b LOC103373828,LOC101477438,LOC102298784 coding upstream 184446 23662657 ~ 23684696 (+)
tmem265 LOC103373868,LOC104958454 coding upstream 258648 23598097 ~ 23610494 (+)
npas4a npas4,LOC102790988 coding upstream 283570 23579577 ~ 23585572 (+)
efemp2a efemp2 coding upstream 309299 23549121 ~ 23559843 (+)
inppl1b LOC104923483,LOC103373706 coding downstream 12740 23891416 ~ 23926666 (+)
p2ry4 p2ry4,LOC104957995,LOC106515297 coding downstream 52970 23931646 ~ 23938563 (+)
sox3 sox3,LOC104923485 coding downstream 75068 23953744 ~ 23956783 (+)
atp11c atp11c coding downstream 127731 24006407 ~ 24056276 (+)
mcf2a mcf2,LOC106941039 coding downstream 181445 24060121 ~ 24083694 (+)
G107565 dlg3,LOC102786504 non-coding upstream 68915 23798657 ~ 23800227 (+)
G107531 NA non-coding upstream 181070 23686594 ~ 23688072 (+)
G107507 slc25a5,LOC106926499,LOC103140121,LOC101464643,LOC102200398,LOC104931197 non-coding upstream 224627 23643292 ~ 23644515 (+)
G107410 ccdc85b,LOC102791751 non-coding upstream 329760 23535861 ~ 23539382 (+)
G107377 NA non-coding upstream 451599 23417224 ~ 23417543 (+)
G107570 NA non-coding downstream 5917 23884593 ~ 23985057 (+)
LOC120567136 NA non-coding downstream 67915 23946591 ~ 23976908 (+)
G107596 NA non-coding downstream 177865 24056541 ~ 24059249 (+)
G107704 NA non-coding downstream 534234 24412910 ~ 24413556 (+)
G107708 NA non-coding downstream 538915 24417591 ~ 24418293 (+)
LOC120566416 NA other upstream 3868 23855525 ~ 23865274 (+)
G107487 mrpl11,LOC102790704 other upstream 242853 23590328 ~ 23626289 (+)
G107386 cfl1 other upstream 374153 23492844 ~ 23494989 (+)
LOC120566905 LOC104953971 other upstream 376604 23488285 ~ 23492538 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other upstream 402937 23454540 ~ 23466205 (+)
arhgef6 NA other downstream 508808 24387484 ~ 24453913 (+)
G107789 tmem35a other downstream 926524 24805200 ~ 24808701 (+)
nox1 nox1 other downstream 961510 24840186 ~ 24846893 (+)
apln NA other downstream 1194537 25073213 ~ 25097023 (+)
rpl39 NA other downstream 1400892 25279568 ~ 25282207 (+)

Expression


Co-expression Network