cd40lg


Basic Information

Item Value
gene id cd40lg
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24454805 ~ 24457209 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813789.1
GATGTCACGGAGCCAAGGCCTCTCTAGGTTACAGCACTCCTCTCTACCATGATCAACACTTACCAGACCAGCATGGCTCCACCGCCGGTGCCTCCGCGCCTCGGCGCGTCCCAGCCGGTCCTCATCCCGGCTCCACTTCCATCGCGAGGCCACAGCAAGTCCCTCGTCCGGTTTATGGTTGCTGTAGTGttgctgcatttatttctgtcgGTCGGAGGATTCATCTACCTGTACTACAAagacaaaatgCTTTCATTTCAGGTTCCCTCAGGTGATGGAAAAGCTGCTTATATCTCATCAGAGAAGCAGGAAACTTCTGAAAAACCCTTGGCACGCATGGTAGTTGAGCAGAAATCACACACATCAGATCAGAAATCTGAACTGGGTTATCTCCAGTGGGACATGAGCCACTCAGTCCTTAGGAACATCAGACCCTACTACAACAGTAGGCTGACTATCCTGCAGCCTGGTGACTACTACGTCTACTCCAGGGTGACCTTCTCCAAAGGCGACTCTAAGCGCCCACTGGTCAGCAGGGTGAAGCTGAGGGATAATGAGACAGGAAAGGAGAAGGTGGTGATGCAGGCCTATTGCAACCTGAACGACAGAGATTCATCCATCCCTCGCCTCTGCACGGCCACACAGGGAGAGTTGATCACACTGGAGAAAGGAAACCAGCTAAGCCTTTGGGTACAGGACCTTTCACTGGTGAACTACGAGGAAGGAGCCACAACCTTTGGGATGTACAAACTGTAGGACTTCTATGTGAACACATGTGTGGACCTAAGCTAAAAAGTGGGAACTCATTAAGTGGATCTACTTGGATTTAAAGCTTCTGAGAACACTGTTAAATAGACTGGATTTCTGATCTTTTTCATGGATTTCAGAGACAACACTCCTAaagtataatatattattaaatcAGAAATAGTACGTGGATTTTTTTATGGCAGTATTGTGAATGGCTGTTCTGTATTTATTGATGTAAATTGAGTTTGTATTGCTGTGAAATGAAACTTTGATATTTAATCACTTTGTCTTGCGTCTGCTCTATTTCATGAGCTAGTTACACATATAGTCGACTGAAACGTCCAGACTACAAAAAGCACCATGTGTGCATGTCCCGGTATGGAGCGTATCTGCATGATAatgcagcatattttaaatggtgTAAAGGAAAGATGTGCAGGCAAAAAAAGGTTTAAGtcgtaaaaaagaaaatcattgaGATGTTTGATGAATCACAATTACTAATACCGAGATTAGTCACCAGTAAACACAGCAAAGACTACCACTACTCATCTGACATACCCAAAATTATCCTCCATAGACTCAAATAATCTTTTACCACATTTGCTGTACAGCACAAAACCATGCTGCAATGGTTTTCAATTTCTAGGACGCAGGAAACCACATAGCAATGATGTATTTTCTGCAAACATGACCACCCAAGATGTAGGTTACCAATTGAGAGGTGGTAACTGGACTCAGTACTAACGGTCATTTTGATGTA

Function

NR:

description
PREDICTED: CD40 ligand

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813789.1 True 1513 mRNA 0.44 4 24454805 24457209

Neighbor

gene id symbol gene type direction distance location
LOC120566938 tm9sf2 coding downstream 36494 24408676 ~ 24418311 (-)
zic6 LOC104917996,LOC104957987,LOC103376516,LOC101465244,LOC102782580,LOC102312981 coding downstream 124045 24322057 ~ 24330760 (-)
f9a NA coding downstream 363575 24083304 ~ 24091230 (-)
arr3b NA coding downstream 554505 23894595 ~ 23900300 (-)
stard14 NA coding downstream 571348 23879061 ~ 23883457 (-)
tmtops3a LOC103376588,LOC104957983,LOC101471053,LOC102197526,LOC102311316 coding upstream 1888 24459097 ~ 24465511 (-)
vgll1 NA coding upstream 15966 24473175 ~ 24476728 (-)
adgrg4a NA coding upstream 20356 24477565 ~ 24490143 (-)
fhl1a fhl1 coding upstream 70455 24527664 ~ 24541162 (-)
slc9a6a slc9a6 coding upstream 86801 24544010 ~ 24558121 (-)
G107742 NA non-coding downstream 671 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding downstream 4036 24448121 ~ 24450769 (-)
LOC120566461 NA non-coding downstream 73493 24288149 ~ 24381312 (-)
G107667 NA non-coding downstream 195459 24199499 ~ 24259346 (-)
G107610 NA non-coding downstream 662303 23792054 ~ 23792502 (-)
G107759 NA non-coding upstream 11740 24468949 ~ 24469187 (-)
G107764 map7d3 non-coding upstream 40127 24497336 ~ 24514238 (-)
G107765 NA non-coding upstream 65914 24523123 ~ 24524589 (-)
G107772 NA non-coding upstream 86171 24543380 ~ 24543713 (-)
G107855 taf7l,taf7 non-coding upstream 103994 24561203 ~ 24563631 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 465904 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1267747 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1277779 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 1320020 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 1461576 22990987 ~ 22993229 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 116232 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 404761 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 805963 25263172 ~ 25264864 (-)
G107989 NA other upstream 822394 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1380121 25837330 ~ 26258199 (-)

Expression


Co-expression Network