rlim (rlim,LOC104950806)


Basic Information

Item Value
gene id rlim
gene name rlim,LOC104950806
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17510949 ~ 17519476 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813795.1
TTTCCTCAGTTTCCGGAAGATCATTGTAGCCttcctaaaagaaaaaaaatggaaacctGAAATCGCACTTAGCTTAACAGTCGAGCGTTTTTGTTATTATATAAGAACAATTTGGAGGTACGATTACCGACATCATCAAAAAGCAGCTGGATCTTGCTGAAGATTGGAGAGCATCCCTTAACCTCCCTTCTGAATCAATGGAAGGGTCTGACAGTTTAGAGCAAAATGGCAGTGACCAGCCAGAGTCACAGCGCAGAAGGCAGCTGGACCGCCTGGACAGGGAAGAGGCCTTCTACCAGTTTGTTAACAATCTCAGTGATGAGGACTACCGTCTCATGAGAGACAACAATCTTTTGGGCACCCCAGGAGAGGTAACGGAGGATGAGCTGTTTAGTAGACTACAGCAAATCAAGGATGGTCCGGAACAGCAGAATAACAGTACTAGTGCTCCCAGTACTGAAAGTGGAGAAGATCCAGTTGAACCACCAGAAAACTCTGAGGATCCTGCCAATGGGGATAGTCTCTTAGACTGGCTAAACACAGTGAGGCGCACAGGCAACACAACCAGAACCGGTCATCGTGGAAACCAGTCATGGCGGGCTGTAAGCCAGACCAACCCAAACAGTGGCGATTTTCGCTTTAGCCTGGAAATCAGTGTGAATCGCAACCTGGCTGAACAGCAGGCTGCTGCTGAAGGGGAGCAGGAGTCTCCCCAGGAGTCTCCAGAGGGTCAAGAAGTGGTGGCAAGTGCTGAACCAGAGGTGGCAAGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAAGTGCTGAACCACAGGTGGAAAATACTGAACCACAGGTGGAAAATGCTGAACCACAGGTGCCCATGGAGACGGAAGTGGTAGAAGAACCAGTTGTAGAGGAATTGGCTGTCACAGTGGAGCCAGAACCAGAGCCTGAACTAGAAGAAGTTGTTTCACAAGAGATTTTAGGAGAACCTCCCAGCTCACCTGCCGCCCTGCCGGTACAACCCCCACTTTCTCCTTCTCCACGCAGAGGACAAAGAAGAGCCCGCAGCCGCAGTCCAGAACCACGCAGGACTAGGGCCCGTACAGCCAGGAGCCGCTCCCCTCTCAACCTGGATCAGCTGGATGGTCTCCCTAATCCACGTCATGCTCACAGCTCTCAAGGCCTGAACTCTGCCACCTTTGCTCCCCCTGTGTCTCAAGTAGAGGGCAGTTCTCGGACTCGACAACATGTTCTTTCTAGGCAAAGCACTGCTGACAGTGATGTTCAGCTATCTAGGGCTAGCGCAGAAACGGTCCCAGAGGCCCAAAATGTGGGATCTCAAGAAGGAGAAGCTGCTGGGGGGGAAGGGGGTGCAGCGGGGCGCCGCCCCCCTACTATTATGCTTGATCTCCAGGTGCGTCGTGTGCGTCCCGGCGAATATCGCCAAAGAGACAGCATTGCTAGCCGCACCCGCTCGCGCTCCCAGAACTCAAACAACACATTTCTTTATGAGAGTGAGCGTGGTGGATTTCGTAGGACTTTCTCACGCTCTGAACGTGCTGGTGTGAGGACCTACGTCAGCACTATACGCATCCCTATCCGAAGAATCTCTGATGCAGGTTTGGGAGAGGCAACCTCAATGGCTCTTCAATCTATGATTAGGCAGATTATGACTGGTTTTGGTGAACTCGGCTACCTCATGGATTCAGACTCTGATTCTTCAGATTCAAACCGTGGTGCCAACACACCTGCGGATCTGGCTGAAGCCATCAACAACCCAGATGCTGCTACACCTGCTGCCGCTCCTGTTGCCGACGTCGATGAACCACCTCTGGCTACAGGAGTTAGAGCAAGGACAGCAGAGGCTGATATTGACGAGGGCCTTGCCACTGCTCCACCTCCCCCTGGTGGCAGGGCTCGACCTAGACCACCTATCAGCCTAGAGGAGCCCAGCTCGCTGCCCTTCCTGCGGCTTGCCCACTTCTTCCTCCTAAATGATGACGATGAGGACCAGCCCCAAGGGCTGACTAAAGAGCAGATTGACAACCTCTCAATGCGCAACTTTGGTGAGACTGATGCCTTGAAAACTTGCAGTGTCTGCATAACAGAATATGCTGAAGGTAACAAGCTACGTAAGCTGCCCTGCTCTCATGAGTACCACGTGCACTGCATTGATCGCTGGCTATCCGAAAACTCTACTTGCCCCATCTGCCGCAGGGCTGTCTTGATATCGGCCAACCGAGAGAGCGTGGTGTAGCTTATAAAAGACTGCAGGCCTTTTTGTCTCAACCTAAGTAATCTAATATCCCAAGTCCATAAGAGGCTTTGATGAAATGTGTCTCCACTGTTGAAATGTATTTCTTTCATACCATTTGTGAGTTTGATCATAATGCAGTCAGGTTTGATTTGCGGTGCTCCATACAGTGACATCGGGACAAGTTCAGTCTTTAGTAAGACCTTTTATTATTGCAGTCCAAAGTTAGGCACAAGCAATGCATGCTGTTTGAATTAACCTGTAGTGACCAAGGAGTTTGTTGCATGGCGTCAAGCCATGTACATAATCAGGCCGGTAGCTCTCAAAGAATTTCCTGTTTATAAATGCTGCACACCTGCAGGTAGTTCAGGCACATCTGCTATTTTGTATTATCTCCTAAATTGCGCCTTATATACCGGAAGTTGGGCATTGGTACAGTTCTTAGTTACACCAGTTCAAAGTATTAGCTGTAAATAAGcttgtaaaaataattttggATCATACTTTGTATCAGTGAATTGGTTTTGAATTGTAGATTATCTCATATAAAGGTTAGGGTCATGTTGGCTGCAATGACTCTCTATCAGAGCATCCCTACAGTTTCTGTTTAACAAATAGGTGGTATCAGTGTACACAGAAGAATTATTTAGAGATTGTGATGTCCAAAGGATGTTGGACATTAATTGGTTTGCCATTTACTAGTGACTTGTACTCTCCCTTTTTGTACACCTAAAAGAAACAAAGTACTGTTTTGGGGTGGCATATACCATGAAAACTCTGCGTGATGAATTGTTTAAAATCAAGTTGTTGGCATGTGAATTTTTCCACCTCAAAATATACTGACAGGCATGATgttaaacatttgaatatacttgttttttcccccccaagtGTAAAAGGATGTTTACTCATTTTGTCCTGCCATCCATTAGCTACTGgtcttttattctttatttttctacTAACCTATTGGATCGTCTTTAATTATTGACTCATTAATAACATTCTCTAAGCGGATATCGGCATGGATTGAAATTATTAGAAATTGACTTGAATTGAATTGTCAACCCAAGCAAGAATAGATCTGTTTACCCGGAGGTTTACATCAATGTACAAGTGAAAAATTAAGTTATTAATCCAAAGGTTTGAGTGTCAAATATTAACCAAGTCTGAAAAATTCACGTTATTGTCCTCTCTTACTAAGGCTCCAGTAGAAAGTCAAGATGCCTGCCCACTGTGCCCTCCTTCTGCCCCATGAGCAGATGCTCCATATCAGTGTGCAATACATGCTAAAGTGAAAGTAGGGAAATACAAACCATGATATAAATGTATGCTATTGTTAAAAAGCAGTTGTTAATGGCTAAAATCTTAAATGAAGACttattacttttaaaaaaaaatgtgttgaagttattttattttatttagaagtTCTGTAGGTTTTAATAGCACTGTTGATGAACAGGAACATTGGCTTATGGAAGAAATGGGCATCCCTATTAATGCCATCCTGTCATGTTTCTTGTTCTACTGTTTGATGTCTCTGCCCCGATTATTACTTCCCTTTGTGGGACATAAAAGTTTGAATGCAAGACGTTGTCATTGTTGAATACCataaacatgtaaatgaaatgtatgTTTCCTCTTAGGCCATTCTTTAGTTGTGGCCTTGTTCTGTGTCACCCAGTGCAGTATGGAACTGGGAGTTAAATAAAACTAACCGCTGAATTAAACAAGTTGTTAATGCTACAAAATGCATTGCTGGTAGGCATTCTGTACACTCACTgtcattaattaattttattctGCATTCAGGTGCACACCTTATTACTTATCATTACTTCTCCCTTATATATTAAAGTCTAAATTTCCATTTA
>XM_039813796.1
ATTTCCTCAGTTTCCGGAAGATCATTGTAGCCttcctaaaagaaaaaaaatggaaacctGAAATCGCACTTAGCTTAACAGTCGAGCGTTTTTGTTATTATATAAGAACAATTTGGAGGTACGATTACCGACATCATCAAAAAGCTGGATCTTGCTGAAGATTGGAGAGCATCCCTTAACCTCCCTTCTGAATCAATGGAAGGGTCTGACAGTTTAGAGCAAAATGGCAGTGACCAGCCAGAGTCACAGCGCAGAAGGCAGCTGGACCGCCTGGACAGGGAAGAGGCCTTCTACCAGTTTGTTAACAATCTCAGTGATGAGGACTACCGTCTCATGAGAGACAACAATCTTTTGGGCACCCCAGGAGAGGTAACGGAGGATGAGCTGTTTAGTAGACTACAGCAAATCAAGGATGGTCCGGAACAGCAGAATAACAGTACTAGTGCTCCCAGTACTGAAAGTGGAGAAGATCCAGTTGAACCACCAGAAAACTCTGAGGATCCTGCCAATGGGGATAGTCTCTTAGACTGGCTAAACACAGTGAGGCGCACAGGCAACACAACCAGAACCGGTCATCGTGGAAACCAGTCATGGCGGGCTGTAAGCCAGACCAACCCAAACAGTGGCGATTTTCGCTTTAGCCTGGAAATCAGTGTGAATCGCAACCTGGCTGAACAGCAGGCTGCTGCTGAAGGGGAGCAGGAGTCTCCCCAGGAGTCTCCAGAGGGTCAAGAAGTGGTGGCAAGTGCTGAACCAGAGGTGGCAAGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAGGTGCTGAACCAGAGGTGGCAAGTGCTGAACCACAGGTGGAAAATACTGAACCACAGGTGGAAAATGCTGAACCACAGGTGCCCATGGAGACGGAAGTGGTAGAAGAACCAGTTGTAGAGGAATTGGCTGTCACAGTGGAGCCAGAACCAGAGCCTGAACTAGAAGAAGTTGTTTCACAAGAGATTTTAGGAGAACCTCCCAGCTCACCTGCCGCCCTGCCGGTACAACCCCCACTTTCTCCTTCTCCACGCAGAGGACAAAGAAGAGCCCGCAGCCGCAGTCCAGAACCACGCAGGACTAGGGCCCGTACAGCCAGGAGCCGCTCCCCTCTCAACCTGGATCAGCTGGATGGTCTCCCTAATCCACGTCATGCTCACAGCTCTCAAGGCCTGAACTCTGCCACCTTTGCTCCCCCTGTGTCTCAAGTAGAGGGCAGTTCTCGGACTCGACAACATGTTCTTTCTAGGCAAAGCACTGCTGACAGTGATGTTCAGCTATCTAGGGCTAGCGCAGAAACGGTCCCAGAGGCCCAAAATGTGGGATCTCAAGAAGGAGAAGCTGCTGGGGGGGAAGGGGGTGCAGCGGGGCGCCGCCCCCCTACTATTATGCTTGATCTCCAGGTGCGTCGTGTGCGTCCCGGCGAATATCGCCAAAGAGACAGCATTGCTAGCCGCACCCGCTCGCGCTCCCAGAACTCAAACAACACATTTCTTTATGAGAGTGAGCGTGGTGGATTTCGTAGGACTTTCTCACGCTCTGAACGTGCTGGTGTGAGGACCTACGTCAGCACTATACGCATCCCTATCCGAAGAATCTCTGATGCAGGTTTGGGAGAGGCAACCTCAATGGCTCTTCAATCTATGATTAGGCAGATTATGACTGGTTTTGGTGAACTCGGCTACCTCATGGATTCAGACTCTGATTCTTCAGATTCAAACCGTGGTGCCAACACACCTGCGGATCTGGCTGAAGCCATCAACAACCCAGATGCTGCTACACCTGCTGCCGCTCCTGTTGCCGACGTCGATGAACCACCTCTGGCTACAGGAGTTAGAGCAAGGACAGCAGAGGCTGATATTGACGAGGGCCTTGCCACTGCTCCACCTCCCCCTGGTGGCAGGGCTCGACCTAGACCACCTATCAGCCTAGAGGAGCCCAGCTCGCTGCCCTTCCTGCGGCTTGCCCACTTCTTCCTCCTAAATGATGACGATGAGGACCAGCCCCAAGGGCTGACTAAAGAGCAGATTGACAACCTCTCAATGCGCAACTTTGGTGAGACTGATGCCTTGAAAACTTGCAGTGTCTGCATAACAGAATATGCTGAAGGTAACAAGCTACGTAAGCTGCCCTGCTCTCATGAGTACCACGTGCACTGCATTGATCGCTGGCTATCCGAAAACTCTACTTGCCCCATCTGCCGCAGGGCTGTCTTGATATCGGCCAACCGAGAGAGCGTGGTGTAGCTTATAAAAGACTGCAGGCCTTTTTGTCTCAACCTAAGTAATCTAATATCCCAAGTCCATAAGAGGCTTTGATGAAATGTGTCTCCACTGTTGAAATGTATTTCTTTCATACCATTTGTGAGTTTGATCATAATGCAGTCAGGTTTGATTTGCGGTGCTCCATACAGTGACATCGGGACAAGTTCAGTCTTTAGTAAGACCTTTTATTATTGCAGTCCAAAGTTAGGCACAAGCAATGCATGCTGTTTGAATTAACCTGTAGTGACCAAGGAGTTTGTTGCATGGCGTCAAGCCATGTACATAATCAGGCCGGTAGCTCTCAAAGAATTTCCTGTTTATAAATGCTGCACACCTGCAGGTAGTTCAGGCACATCTGCTATTTTGTATTATCTCCTAAATTGCGCCTTATATACCGGAAGTTGGGCATTGGTACAGTTCTTAGTTACACCAGTTCAAAGTATTAGCTGTAAATAAGcttgtaaaaataattttggATCATACTTTGTATCAGTGAATTGGTTTTGAATTGTAGATTATCTCATATAAAGGTTAGGGTCATGTTGGCTGCAATGACTCTCTATCAGAGCATCCCTACAGTTTCTGTTTAACAAATAGGTGGTATCAGTGTACACAGAAGAATTATTTAGAGATTGTGATGTCCAAAGGATGTTGGACATTAATTGGTTTGCCATTTACTAGTGACTTGTACTCTCCCTTTTTGTACACCTAAAAGAAACAAAGTACTGTTTTGGGGTGGCATATACCATGAAAACTCTGCGTGATGAATTGTTTAAAATCAAGTTGTTGGCATGTGAATTTTTCCACCTCAAAATATACTGACAGGCATGATgttaaacatttgaatatacttgttttttcccccccaagtGTAAAAGGATGTTTACTCATTTTGTCCTGCCATCCATTAGCTACTGgtcttttattctttatttttctacTAACCTATTGGATCGTCTTTAATTATTGACTCATTAATAACATTCTCTAAGCGGATATCGGCATGGATTGAAATTATTAGAAATTGACTTGAATTGAATTGTCAACCCAAGCAAGAATAGATCTGTTTACCCGGAGGTTTACATCAATGTACAAGTGAAAAATTAAGTTATTAATCCAAAGGTTTGAGTGTCAAATATTAACCAAGTCTGAAAAATTCACGTTATTGTCCTCTCTTACTAAGGCTCCAGTAGAAAGTCAAGATGCCTGCCCACTGTGCCCTCCTTCTGCCCCATGAGCAGATGCTCCATATCAGTGTGCAATACATGCTAAAGTGAAAGTAGGGAAATACAAACCATGATATAAATGTATGCTATTGTTAAAAAGCAGTTGTTAATGGCTAAAATCTTAAATGAAGACttattacttttaaaaaaaaatgtgttgaagttattttattttatttagaagtTCTGTAGGTTTTAATAGCACTGTTGATGAACAGGAACATTGGCTTATGGAAGAAATGGGCATCCCTATTAATGCCATCCTGTCATGTTTCTTGTTCTACTGTTTGATGTCTCTGCCCCGATTATTACTTCCCTTTGTGGGACATAAAAGTTTGAATGCAAGACGTTGTCATTGTTGAATACCataaacatgtaaatgaaatgtatgTTTCCTCTTAGGCCATTCTTTAGTTGTGGCCTTGTTCTGTGTCACCCAGTGCAGTATGGAACTGGGAGTTAAATAAAACTAACCGCTGAATTAAACAAGTTGTTAATGCTACAAAATGCATTGCTGGTAGGCATTCTGTACACTCACTgtcattaattaattttattctGCATTCAGGTGCACACCTTATTACTTATCATTACTTCTCCCTTATATATTAAAGTCTAAATTTCCATTTA

Function

symbol description
rlim Predicted to enable metal ion binding activity. Acts upstream of or within regulation of transforming growth factor beta receptor signaling pathway. Is expressed in mesoderm. Human ortholog(s) of this gene implicated in Tonne-Kalscheuer syndrome. Orthologous to human RLIM (ring finger protein, LIM domain interacting).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RLIM

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813795.1 True 4189 mRNA 0.45 4 17510949 17519475
XM_039813796.1 False 4187 mRNA 0.45 4 17510949 17519476

Neighbor

gene id symbol gene type direction distance location
glod5 glod5 coding downstream 407 17507123 ~ 17510542 (-)
LOC120566359 LOC106925651,LOC106940816,LOC108240559 coding downstream 12213 17494973 ~ 17498736 (-)
LOC120567262 LOC103359155,LOC104923198,LOC101474624,LOC106518113 coding downstream 28831 17480296 ~ 17482118 (-)
LOC120567260 LOC103359160,LOC108240568,LOC106514372,LOC101486456 coding downstream 52698 17451649 ~ 17458251 (-)
LOC120567258 LOC103359155,LOC104923198,LOC101474624 coding downstream 65889 17443222 ~ 17445060 (-)
abcb7 abcb7,LOC102795903 coding upstream 68200 17587676 ~ 17618547 (-)
zdhhc15b zdhhc15 coding upstream 106081 17625557 ~ 17629897 (-)
atrx atrx coding upstream 160224 17679700 ~ 17723014 (-)
sh3rf2 LOC104943536 coding upstream 230187 17749663 ~ 17769267 (-)
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding upstream 315241 17834717 ~ 17843371 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 174997 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 185994 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 357356 17152171 ~ 17153593 (-)
G105577 NA non-coding downstream 392685 17117751 ~ 17118264 (-)
G105549 NA non-coding downstream 455327 17052505 ~ 17055622 (-)
G105749 NA non-coding upstream 235738 17755214 ~ 17755915 (-)
G105759 NA non-coding upstream 309146 17828622 ~ 17831148 (-)
G105768 NA non-coding upstream 355360 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 357556 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 409356 17928832 ~ 17933470 (-)
frmpd3 frmpd3 other downstream 254017 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 359333 17142082 ~ 17151616 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other downstream 547413 16957643 ~ 16963536 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other downstream 836094 16524356 ~ 16674855 (-)
unc5a unc5a,LOC102788949 other downstream 1407155 15960197 ~ 16103794 (-)
nexmifb kiaa2022 other upstream 2665 17522141 ~ 17577811 (-)
kif3a kif3a other upstream 148608 17668084 ~ 17748547 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other upstream 264084 17783560 ~ 17795391 (-)
LOC120566288 NA other upstream 337608 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 467720 17987196 ~ 17995350 (-)

Expression


Co-expression Network