abcb7 (abcb7,LOC102795903)


Basic Information

Item Value
gene id abcb7
gene name abcb7,LOC102795903
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17587676 ~ 17618547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813797.1
ACCGCCTTCCTCATTCGGCAACATGGCGCCGATGATGCTAACGTTGAAATCCGGCTTTCACTTTCAAAGACGAAAATTAGCGCTTCTCCTTCGACAAACGAGCTCATATCACATTTGGAATAAAACTCGCCCTGAAAACGGGACGGAACATAAACGCcaaagtaacgttacacatctgCTGAGTTCCCCTCCACACCTACGAACATCAACATGGACTACAAACAGGGTCGAAAACAATCGTCGGATTTTGGAGGCAGTAAAACATTTGCAGATTACAGACAAAAGAACATGTTGGCACGGAAATGCAGGAGGAAAGCTGAATGCAGATCCCAAAAATGTGCTGAACGAGGTGAATTCATCCCAGATCCTGTCTGCAATGCTGTCTTATGTGTGGCCAAAGAATAGACCAGACCTGCGCGCCCGTGTTGCCATCTCTCTGGGCCTGCTCGCTGGAGCCAAGATAACCAATGTGACGGTGCCCTTCATGTTTAAGTATGCAGTGGACGAGCTTAACCAGATGTCGGGACACATGCTGAACCTGAATGACGCGCCAAGCACTGTGGCTACCATGGCAACGGCCATGCTGATTGCCTATGGTACGTCACGGGCTTGTGCAGCCCTCTTCAACGAGCTGAGGAACACAGTGTTCGGCAAGGTTGCCCAGAGCTCCATCCGACGAATCGCCAAGAACGTCTtcctccacctgcacaatctgGATCTGGGTTTCCATCTCAGCCGCCAGACAGGAGCGCTGTCCAAGGCCATCGACCGCGGCACACGGGGCATCTCATTTGTCCTTAGTGCACTCGTCTTCAATCTTGGACCCACAGTCTTTGAAATGATCCTCGTCAGTGGCATTTTGTATTACAAGTGTGGTGGACAGTTTGCAGCAGTGTCCTTGGGTACCTTATCAGCATACACCATCTTCACCATTCTCGTCACTCAGTGGAGGACTCGTTTCCGGATAGAAATGAACAAAGCAGACAATGAAGCCGGCAACGCAGCTATTGACTCCCTCCTTAACTATGAGACTGTTAAGTACTTCAACAATGAGAAGTATGAAGCTGAAAAGTATGATGGATACCTGAAAACCTATGAGTCGTCCTCTTTAAAAACCACGTCCACGCTCGCCCTCCTCAACTTTGGCCAGAGTGCCATCTTCAGTGTCGGCCTCACTGGCATGATGTTGCTGGCCAGCAAGGGCATTGTggcagGTACGATGACCGTGGGAGACCTGGTGATGGTGAATGGCCTGCTCTTCCAGCTCTCCCTCCCCCTCAACTTCCTGGGCACAGTGTACAGAGAGACCCGGCAGGCCCTAATAGACATGAACACTCTCTTCACCCTGCTCAGCGTCGACACCAAGATCAAGGAGAGGGATCTCGCCCCGCCATTAGCCATCGCACCACAGGGGGCCACCATTCGCTTCGAGGACGTCTATTTTGAATACCTGGAGGGCCAGAAAGTGCTAACCGGAGTGTCCTTCGAAGTGCCTGCTGGGAAGAAGGTGGCTATAGTTGGTGGCAGCGGGTCAGGGAAGAGCACCATTGTGCGGCTGTTGTTCCGCTTCTTTGAGCCCCAGCGGGGGAACATCTATATAGCGGGGCAGAATATCCGAGACGTCAGCCTTGACAGCCTGCGGAGGTCTTTGGGGGTTGTACCTCAGGATAGCGTTCTGTTCCACAACACCATCTTCTACAACCTGCAGTACGGGAACATCAACGCTACACCAGAGGAGGTGTACCAAGTGGCTCGGCTAGCAGGCATCCATGATGCTATCCTCAGGATGCCCCATGGCTATGACACCCAGGTTGGGGAGCGAGGGCTCAAGCTGTCAGGAGGGGAGAAGCAACGTGTCGCCATCGCCCGCGCAATACTAAAGAATCCACCTGTCCTGCTGTATGACGAAGCAACATCCTCCCTCGACTCAATCACCGAAGAGAACATCCTGACTTCAATGAAAGCGATGGTGAAGAACAGGACATCAGTGTTCATCGCCCACAGGCTTTCCACAATCGTAGACGCAGACGAGATTATAGTGCTCAATGAGGTAAGAACTCAtccacttattttttttacttgatcTCATACCTTGCCTAATTAACATTCCAGTTGTAATGTCAgcttaataaaaagcaaataaTATGACGGTTCAGAGTTTCCGAGCAAAAACATGCGCTGTGTTAATTGCCAGTCCAATTAGACGATTTTTCATTGAACGGATGGATGATGTCCTGCACTCTGCGTGACCTTTAGCGCACTGTATCTGCAAGACACAAGAATTTAGAGAGCAGCCtctgtttttgccacttgtTTTGAGTTACGTTTCTACAACGTACGTGATGAAAACATGCTTTGTTTAGCTTTTCTCATTAACTTCAACAACAACAGGACACAGTTGGTAGAAGGGAATGtattattttctccataagggCTCATTAAAGCAGTCCAACTCGACTGGCTGTTTTGGTCAGATGGCGCGTCTTGTTTGTCTCTGTGACTAATAATGTATGGGCCAGCTTCCCAGACACTGATGAGGCCTCATCCAGGACTAAACAGGTCTTTTAATGGAGATCGCCATTCAAATGGTTTATCTGTACAGTTTTTGGTCAGTTGTGTTTAAGTCAGGCTGAAGGTGCCATAGAGACATAGAGTATGTTTTAAAAATCTTTTCGATGCATTGTCACATTGTGCATCGTGCATCAGAGAAATATccaagagaagagaaaaatgcTGCAGTAAGTAACGGGCTGGGCTTGAGACACAGTAAGGCACAAAAAGACACCGAGGGAAGTCAGTTATTATCTGGAAAGTAAGAGTTAATATGAGAAGTAACACAGATGAAATGACATTTTCCACCAGTGCTCGAGTCAGATAGGATAAAATGAGAAGAGGTTTCTTTGAACTGCGGCGAGTGAGCATGTGTCGTTCCAGAGTCAGATGGAAAGGGATCAGAGG

Function

symbol description
abcb7 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in cellular iron ion homeostasis and transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in X-linked sideroblastic anemia with ataxia. Orthologous to human ABCB7 (ATP binding cassette subfamily B member 7).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05662 ABCB7, ATM; ATP-binding cassette, subfamily B (MDR/TAP), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813797.1 True 2958 mRNA 0.49 15 17587676 17618547

Neighbor

gene id symbol gene type direction distance location
rlim rlim,LOC104950806 coding downstream 68200 17510949 ~ 17519476 (-)
glod5 glod5 coding downstream 77134 17507123 ~ 17510542 (-)
LOC120566359 LOC106925651,LOC106940816,LOC108240559 coding downstream 88940 17494973 ~ 17498736 (-)
LOC120567262 LOC103359155,LOC104923198,LOC101474624,LOC106518113 coding downstream 105558 17480296 ~ 17482118 (-)
LOC120567260 LOC103359160,LOC108240568,LOC106514372,LOC101486456 coding downstream 129425 17451649 ~ 17458251 (-)
zdhhc15b zdhhc15 coding upstream 7010 17625557 ~ 17629897 (-)
atrx atrx coding upstream 61153 17679700 ~ 17723014 (-)
sh3rf2 LOC104943536 coding upstream 131116 17749663 ~ 17769267 (-)
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding upstream 216170 17834717 ~ 17843371 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding upstream 225336 17843883 ~ 17846554 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 251724 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 262721 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 434083 17152171 ~ 17153593 (-)
G105577 NA non-coding downstream 469412 17117751 ~ 17118264 (-)
G105549 NA non-coding downstream 532054 17052505 ~ 17055622 (-)
G105749 NA non-coding upstream 136667 17755214 ~ 17755915 (-)
G105759 NA non-coding upstream 210075 17828622 ~ 17831148 (-)
G105768 NA non-coding upstream 256289 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 258485 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 310285 17928832 ~ 17933470 (-)
nexmifb kiaa2022 other downstream 9865 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 330744 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 436060 17142082 ~ 17151616 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other downstream 624140 16957643 ~ 16963536 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other downstream 912821 16524356 ~ 16674855 (-)
kif3a kif3a other upstream 49537 17668084 ~ 17748547 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other upstream 165013 17783560 ~ 17795391 (-)
LOC120566288 NA other upstream 238537 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 368649 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 448878 18067425 ~ 18068492 (-)

Expression


Co-expression Network