LOC120567039 (LOC103361901,LOC100704274)


Basic Information

Item Value
gene id LOC120567039
gene name LOC103361901,LOC100704274
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 5909740 ~ 5914737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813828.1
atgaCGGGTCAAGTGCAAGATTCACACAGGCTTTCTGTGAAAACATGGACAGATGAGGAGAGTGACCGAGCTGACAGCAATCTTagcagAGCACAGTCGATGTGTGACGACACTTCCTCAGAGCTTCAGAGAATGGCGGCCATTGACAGAAGAGATATTAATTCCCAGAATTCCTTGCATGGGCGAGGTGCTCTGTCCAGGATAGTTAGTATGGTGATGACTCTGAGAGACTGGGCGCATAAGAGTTTGGCTGACGAGACTGAACGCCCAGATTCCTTCTTGGAACGCTTCAGAGGCCCCGTCAACACTGACGTGCAAGACCCTCCCAGCAGGTTCAGCCATACTGGCTCTGACACAGATCATGAAATCAGACGCTCCAGACACACGAGGTGGAAGTGTAATGTCGAGGTCTTATCACCTTCTGATGACGCATACTACCACTGGCTGATGCTGATTGGTGCTGCTGTTTTTTATAACTGGACCCTACTGGTTGTCAGGGCCTGTTTTGATGAGCTCCAGATGCGGAATGTGTTGGTGTGGCTGGTACTGGACTACATCTGTGATGGAGTCTATATCCTGGATATAGCTGTTCGTCTCCACACAGGTTTCTTGGATCAAGGCTTGATGGTGAAAGATGTGCGGCGTCTGAGAGAAACTTACGTTCGAACCTTGCAGTGTAAAATTGACATTTGCTCCATCCTTCCAACTGACCTGCTGTATCTAGCTGTTGGAATGAGCTACACTCCTCTTCTTCGATTCAACCGGCTGCTGCGTCTGTCACGTCTGTTTGAGTGGTTTGAGCGTACCGAGACACGAACGTGCTACCCCAATGCTTTCCGCATCTGTAAACTGGTGCTGTACATCCTGGTGATCATCCACTGGAACGCCTGTGGATACTACAGCTTCTCCAAGGTCCTCGGACTGGGCTCTGATTCTTGGGTGTATCCCAATGCATCAGATCCCGAGTTTGGCTCCCTGACCAGAAGTTACATCTACTGTCTGTACTGGTCCACTCTGACACTGACCACCATTGGAGAGACCCCTCCTCCTGTTAGAGATGAGGAATATTTGTTCCTGATATTTGACTTTCTGGTTGGGGTTCTGATTTTTGCCTCCATTGTGGGTAACGTTGGATCCATGATCTCCAATATGAATGCCACAAGAGCAGCCTTTCAGGGCCGCGTGGACACCCTGAAACACTACATGCAATTCAGGCACGTCAGCAAGGTGCTAGAGCAGCGCGTCATCCGCTGGTTTGACTACCTCTGGACCAATAAGAAGACAATAGATGAACAGGAAGTGCTGAGGAGCCTGCCCAATAAACTGAGAGCAGAGATTGCTATTAATGTTCACCTGGACACACTGAAGAAGgTGCGTATTTTCAAGGACTGTGAGGCAGGCCTCCTTGTAGAATTGGTATTAAAACTTCGACCGCAGGTTTTCAGCCCTGGAGACTACATCTGTAGAAAGggAGATGTGGGTAAGGAGATGTACATAATTAAAGATGGCCAGCTGGCAGTGGTGGGGGAAGATGGAACAACCCAGTTTGCTGTTCTGACATCAGGAAGCTGCTTTGGTGAAATCAGCATCCTGAACATCAGCGGCAGTAAAATGGGGAACCGACGTACGGCTAATATTCGCAGTCTGGGATACTCCGACCTGTTCTGCCTTTCCAAACAAGACCTGATGGAGGCGCTTCAGGAGTTCCCCCACGCCAGGGCCCAGCTGGAGCAGAGGGGGCGGGACATCCTGCAGAAGGAGGGGCTTCTAGAGGAAGTAAATGTGTCTGCAGGGGAGGACCTCGAGGAGAAGGTGGAGAGGCTGGAAACCAGTCTGGATCGGCTACAGACGTGTTTGGCCCGTCTGCAGGGCGAGTTCAACTCTTCCCAGCTTCGACTGAAACAGCGAATCACAACCCTCGAACACAACGTCACCACAGTGGGCACAGGCAGCGGCTTCCTGTCCGACGCCGACGGCAACGAGAGTGTTTTTGGTGGTGACGGCGTTCGCAGTGAAATTAACATCCGGTTCTGA

Function

NR:

description
PREDICTED: cyclic nucleotide-gated cation channel-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813828.1 True 2034 mRNA 0.51 10 5909740 5914737

Neighbor

gene id symbol gene type direction distance location
LOC120567038 LOC104958725 coding downstream 8444 5897142 ~ 5901296 (-)
LOC120567274 NA coding downstream 56194 5851783 ~ 5853546 (-)
LOC120566289 fgl1 coding downstream 163102 5732226 ~ 5746638 (-)
snx25 snx25 coding downstream 178505 5703901 ~ 5731235 (-)
LOC120566996 LOC106903289,LOC106939181,LOC103471019 coding downstream 213356 5670242 ~ 5696384 (-)
LOC120567040 LOC104949792,LOC104935341,LOC107391212,LOC106530877,LOC103151698,LOC105918375 coding upstream 5614 5920351 ~ 5946550 (-)
ptcd3 ptcd3,LOC102784107,LOC104953014 coding upstream 41327 5956064 ~ 5974484 (-)
LOC120567409 NA coding upstream 1196511 7111248 ~ 7112332 (-)
LOC120567393 NA coding upstream 1197958 7112695 ~ 7113960 (-)
trnam-cau_10 NA coding upstream 1207316 7122053 ~ 7122125 (-)
G103621 NA non-coding downstream 14582 5894819 ~ 5895158 (-)
G103618 NA non-coding downstream 21656 5887551 ~ 5888084 (-)
G103612 NA non-coding downstream 44280 5864980 ~ 5865460 (-)
G103519 NA non-coding downstream 388352 5517147 ~ 5521388 (-)
G103513 NA non-coding downstream 419883 5489629 ~ 5489857 (-)
G103657 NA non-coding upstream 85352 6000089 ~ 6001998 (-)
G103661 NA non-coding upstream 96031 6010768 ~ 6021714 (-)
G103694 NA non-coding upstream 174325 6089062 ~ 6109745 (-)
G103712 casp3,LOC104959742 non-coding upstream 230809 6145546 ~ 6169247 (-)
G103731 NA non-coding upstream 343974 6258711 ~ 6259004 (-)
G103434 LOC102212171 other downstream 1323656 4575782 ~ 4586084 (-)
myot LOC103355626,LOC104955473 other downstream 1334064 4554225 ~ 4575676 (-)
fmr1 fmr1,LOC102779310 other downstream 1451913 4426517 ~ 4457827 (-)
LOC120567378 NA other downstream 1509682 4320649 ~ 4400058 (-)
smim19 smim19 other downstream 1976520 3928930 ~ 3933220 (-)
LOC120566343 NA other upstream 842055 6756792 ~ 6759576 (-)
G103806 NA other upstream 1371722 7286459 ~ 7286972 (-)
LOC120567361 NA other upstream 3252553 9167290 ~ 9177633 (-)
abhd18 abhd18 other upstream 3440975 9355712 ~ 9457863 (-)
LOC120566283 magt1,LOC102791632 other upstream 3649262 9563999 ~ 9569926 (-)

Expression


Co-expression Network