sh3rf2 (LOC104943536)


Basic Information

Item Value
gene id sh3rf2
gene name LOC104943536
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17749663 ~ 17769267 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813834.1
GAAGCAGTCTGGTTGCGGTTGAGACCTCGTTAACACCTTTTAACTCTAATTTCCCCAGGTGGAATTCGTGTCGTCATAAATTGTGTCGGCGAATGTAAAGCTCACGCGCCTGTCCTGCGTCATACTGTGGCGTCCTCAGCGCACTGCGTCATGGCGACGGCGGTGAAAAAGTTACGCATTTCCTAACCGGACTGTGCGGCGTATTACTGTGGCAGTCAGCACATACATGTtaTAGTGGATTACAGTGTGTCAGAGGCAGCAGGAGCCCTAGTCCCAAAGAGAGGTGGCTCTTTTAAAATGGAGGAGCTGGCTCTAAGTGCCTTGCTGGAATGTCCTCTGTGTTTTGAGCCACTAGATGTGTCAGCCAAGGTGCTGCCCTGCCAGCACACATTTTGTATGTCCTGCCTCCAGATGCAGGAGACAGCGCACTCCCAGCTGCTCTGCCCAGAGTGTCGCGCTCCTGTACCGGCCAGGACGGTGGAGGAGCTTCCTGCTAACTTGCTGCTAGTGCAGCTCCTGGAGGGGCTCCGGGGCTCACAGGGGCCCagcagggacagacagacagcccgTTACGCAGTGCCCTCGGTCAGGGGAGGCTTGAGAGTTAGGGagggtcagcagcagcagcagcagcagcagcaggagagtCAACACAGAGAGAAGCAAGGGCACCATGAGCTTGCTCTCAGAGCTTTCATGCAAAACCAACGAGGTGATTCGTCAGAAGAGCCGGTCCTCACGCCTGGTAACAGGATCACCCCAAAACACAAAGTGGATGAGAGCTGGAACCACGGAAACACCGGTGAGAGTAGCAGTGCATCCGTCACTGCCAGTACGCTGCAGGCTGTCAGCCAGATGCCACAGCCCCTCCAGCAGTCCCAACCTCCAGCTCTCTGCAGGGCGCTGCATGACTTTAACCCCGAAGAGAGGAATCTGGAAGACAGTAAATATTGTCTCAGCTTCCTCAAGGGAGACATCCTTACTGTCATCCGACGGGTGGATGAACACTGGATTGAAGCCAAGCTTGGTGAGAAAGTTGGAATTTTCCCTCTGCAGTTTACAGAGCCAAACCCAGTGGCAGCCAAACTGCTAGAGGGAAAGAATCGGAGGAAGAGTGACTCAGAATTGACTCGGACTGGGAGTGGGGGCAAAGACAAGACCACTGACGTATCCAATAGGACCACCCATTACCGAGTCCTTCAAGTCCCAGCAAAGACACCCATGATCAATGCTCTTCCCCTCTCCAACCAGCGGAAACAGCCCGCAGCCAGCAGCATCAACTTTTATCCAACTACCAAAGGAGAGACAACCAATATCAGCACCTTCAACAGCTTCGACCGTCAGGGTCAGCCACACCACCGCTCTGTGTCTCTTGCTGCCCGGGGCCACTCTCATCCATCTAGAGTAAACTCTCAGCGAATTAGACGCCACTCTgacactacacacagacacctgtTACAGAGTGAGAAGAAGATGACCAGTGAGACTCCACCCAACATCGCTATGGCTCTGGTAAACCCCCAAATGTCCTCTGCCTCTGCAGACAGCAAAAACTCCACACAGCAGCTCTCCATCAGTGTGTGTGCCGTCCTGTACTCCTACAAACCACGGCGGCCTGAGGAGCTGGAGCTGAGGAAAGGAGAGATGGTGGGAGTGTACGGAAAGTTCAAAGAAGGCTGGCTGCGTGGGTTATCGCTCAGAACAGGCAAAGTGGGCATTCTGCCCAGCAACTACATCACGCCTGTGCTCAGAACCTCGGCCAGACTTCTGGAGACCAAAGCAGCTAATGGATCCTCACAGTACAACACAGTGGCTGGAAAGAAACCCACAGCTGCTAAGAATCCTGCTGTGGTCCTTGCTCTTGATAGGGTAAACTCTGATGGAGCGATATACTCAACAGGACAGGTCCCATCTGTGCCAAATGGAGCACAGCATGCAATGTCATCCACTGGTGCTGGGAAACCGTCCCTTTATGGGGGTTCACAAGGTTGGGACACTGTAAGGCGCATCTTTAACCCTCATAGAGGCTCAAACCATTTCTCCCATACGTCCAATCTGAACACCCTGTCCAACTCACAGCACTTTGCACAAGTTCAGGCATCCGGCTACTCACCTGCCCTGCAGAGAAAGAAATACAGCAGCATCCTGTCAAACTCTGGCAGACCACGGGGCTGGATGACTGAGCCAGCAGCGCCCTCTGCTGCTGCAATCTTTAAGGACAGGGACTTCACTGCTTCACATGAGGCAACGTTTCAGCAGGACAGACAGCCTCCCAATGGGCCTCACTCTATTCTAGTCAGACCTGACTCACACAAGAATAATACAGAGAAGCGAGCAAAGTCAGTGCGGTTCTTCACAGATGAAGACTCCCCTCCTCCAAGACCTCGGACCTCCTCCTGGTCATCAGGAAATCATGTTCCCTCCAACTCCCACCCTGCGTTAGAAGTGTGGGCCCCATCGCTCACGCTGGGAAGAGACGGACCGGGGATCATTCTCAAAGAAGGAAAAGCTCCTATTCTCAGAAAAGGCAACGAAACTGCCACCTCAGATCTAAATTCTAACCCGCAAAAACCAATGTTGTCACAGCCGTCGCTATCAGCCGTGTCAGCTCAGTTTAGCCCCAGCAGaCACAGAGTGACGACAACACATTTAGCCCAGACAGACTCAGAGCTTAGTCTGCTTCAAGGAGAGTTGGTCCTTGTCCACAGACCTCGACCTGATGGACGGGTTCTAATTACTCAGGAGAGCAGTGGGCAGACAGGCTTATTTCACAGCATCGTTCTTCAAGCCCTCGAGAAGCTCAGCTGACTGTGTAGTACTACTGTAGTAGTGTATATTACTATATTCCATGTGTTATAACTGACAAATGACTTGACTAACCTACTGAGGTGTTGAGATTCAAGGTTAATACTGCCATTGACAATCCTTTGAAGAAGCTGTTTATTTTGATCCTGAGTGCATATGAGAGTGTGGTTAAATTTCCCAGAGAcatattgtgtgttgttcaatgtatgtgcatgtttgtTACACATGTACTATTATAAGATTTGCACAAAATCCCACCTAATGACTGTTCCTTGTTTGATACCCATGTTACACGCATTGGTGAGTGCCTTTGTCATAACCCACAAAGAAACAaactatatttaaatatatttagtgAAATGATGAGGTAAAATATATGTACTGCTTATGTGGTAATAAACTATACTTCCAGAA
>XM_039813835.1
GCAGTCTGGTTGCGGTTGAGACCTCGTTAACACCTTTTAACTCTAATTTCCCCAGGTGGAATTCGTGTCGTCATAAATTGTGTCGGCGAATGTAAAGCTCACGCGCCTGTCCTGCGTCATACTGTGGCGTCCTCAGCGCACTGCGTCATGGCGACGGCGGTGAAAAAGTTACGCATTTCCTAACCGGACTGTGCGGCGTATTACTGTGGCAGTCAGCACATACATGTCTTGCTCTCAGAGCTTTCATGCAAAACCAACGAGGTGATTCGTCAGAAGAGCCGGTCCTCACGCCTGGTAACAGGATCACCCCAAAACACAAAGTGGATGAGAGCTGGAACCACGGAAACACCGGTGAGAGTAGCAGTGCATCCGTCACTGCCAGTACGCTGCAGGCTGTCAGCCAGATGCCACAGCCCCTCCAGCAGTCCCAACCTCCAGCTCTCTGCAGGGCGCTGCATGACTTTAACCCCGAAGAGAGGAATCTGGAAGACAGTAAATATTGTCTCAGCTTCCTCAAGGGAGACATCCTTACTGTCATCCGACGGGTGGATGAACACTGGATTGAAGCCAAGCTTGGTGAGAAAGTTGGAATTTTCCCTCTGCAGTTTACAGAGCCAAACCCAGTGGCAGCCAAACTGCTAGAGGGAAAGAATCGGAGGAAGAGTGACTCAGAATTGACTCGGACTGGGAGTGGGGGCAAAGACAAGACCACTGACGTATCCAATAGGACCACCCATTACCGAGTCCTTCAAGTCCCAGCAAAGACACCCATGATCAATGCTCTTCCCCTCTCCAACCAGCGGAAACAGCCCGCAGCCAGCAGCATCAACTTTTATCCAACTACCAAAGGAGAGACAACCAATATCAGCACCTTCAACAGCTTCGACCGTCAGGGTCAGCCACACCACCGCTCTGTGTCTCTTGCTGCCCGGGGCCACTCTCATCCATCTAGAGTAAACTCTCAGCGAATTAGACGCCACTCTgacactacacacagacacctgtTACAGAGTGAGAAGAAGATGACCAGTGAGACTCCACCCAACATCGCTATGGCTCTGGTAAACCCCCAAATGTCCTCTGCCTCTGCAGACAGCAAAAACTCCACACAGCAGCTCTCCATCAGTGTGTGTGCCGTCCTGTACTCCTACAAACCACGGCGGCCTGAGGAGCTGGAGCTGAGGAAAGGAGAGATGGTGGGAGTGTACGGAAAGTTCAAAGAAGGCTGGCTGCGTGGGTTATCGCTCAGAACAGGCAAAGTGGGCATTCTGCCCAGCAACTACATCACGCCTGTGCTCAGAACCTCGGCCAGACTTCTGGAGACCAAAGCAGCTAATGGATCCTCACAGTACAACACAGTGGCTGGAAAGAAACCCACAGCTGCTAAGAATCCTGCTGTGGTCCTTGCTCTTGATAGGGTAAACTCTGATGGAGCGATATACTCAACAGGACAGGTCCCATCTGTGCCAAATGGAGCACAGCATGCAATGTCATCCACTGGTGCTGGGAAACCGTCCCTTTATGGGGGTTCACAAGGTTGGGACACTGTAAGGCGCATCTTTAACCCTCATAGAGGCTCAAACCATTTCTCCCATACGTCCAATCTGAACACCCTGTCCAACTCACAGCACTTTGCACAAGTTCAGGCATCCGGCTACTCACCTGCCCTGCAGAGAAAGAAATACAGCAGCATCCTGTCAAACTCTGGCAGACCACGGGGCTGGATGACTGAGCCAGCAGCGCCCTCTGCTGCTGCAATCTTTAAGGACAGGGACTTCACTGCTTCACATGAGGCAACGTTTCAGCAGGACAGACAGCCTCCCAATGGGCCTCACTCTATTCTAGTCAGACCTGACTCACACAAGAATAATACAGAGAAGCGAGCAAAGTCAGTGCGGTTCTTCACAGATGAAGACTCCCCTCCTCCAAGACCTCGGACCTCCTCCTGGTCATCAGGAAATCATGTTCCCTCCAACTCCCACCCTGCGTTAGAAGTGTGGGCCCCATCGCTCACGCTGGGAAGAGACGGACCGGGGATCATTCTCAAAGAAGGAAAAGCTCCTATTCTCAGAAAAGGCAACGAAACTGCCACCTCAGATCTAAATTCTAACCCGCAAAAACCAATGTTGTCACAGCCGTCGCTATCAGCCGTGTCAGCTCAGTTTAGCCCCAGCAGaCACAGAGTGACGACAACACATTTAGCCCAGACAGACTCAGAGCTTAGTCTGCTTCAAGGAGAGTTGGTCCTTGTCCACAGACCTCGACCTGATGGACGGGTTCTAATTACTCAGGAGAGCAGTGGGCAGACAGGCTTATTTCACAGCATCGTTCTTCAAGCCCTCGAGAAGCTCAGCTGACTGTGTAGTACTACTGTAGTAGTGTATATTACTATATTCCATGTGTTATAACTGACAAATGACTTGACTAACCTACTGAGGTGTTGAGATTCAAGGTTAATACTGCCATTGACAATCCTTTGAAGAAGCTGTTTATTTTGATCCTGAGTGCATATGAGAGTGTGGTTAAATTTCCCAGAGAcatattgtgtgttgttcaatgtatgtgcatgtttgtTACACATGTACTATTATAAGATTTGCACAAAATCCCACCTAATGACTGTTCCTTGTTTGATACCCATGTTACACGCATTGGTGAGTGCCTTTGTCATAACCCACAAAGAAACAaactatatttaaatatatttagtgAAATGATGAGGTAAAATATATGTACTGCTTATGTGGTAATAAACTATACTTCCAGAA

Function

NR:

description
E3 ubiquitin-protein ligase SH3RF1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813834.1 True 3219 mRNA 0.51 11 17749663 17769267
XM_039813835.1 False 2768 mRNA 0.50 10 17749663 17769264

Neighbor

gene id symbol gene type direction distance location
atrx atrx coding downstream 26649 17679700 ~ 17723014 (-)
zdhhc15b zdhhc15 coding downstream 119766 17625557 ~ 17629897 (-)
abcb7 abcb7,LOC102795903 coding downstream 131116 17587676 ~ 17618547 (-)
rlim rlim,LOC104950806 coding downstream 230187 17510949 ~ 17519476 (-)
glod5 glod5 coding downstream 239121 17507123 ~ 17510542 (-)
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding upstream 65450 17834717 ~ 17843371 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding upstream 74616 17843883 ~ 17846554 (-)
hspa4b hspa4 coding upstream 78509 17847776 ~ 17856376 (-)
gdf9 gdf9 coding upstream 91593 17860860 ~ 17864154 (-)
sowahab NA coding upstream 100935 17870202 ~ 17871569 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 413711 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 424708 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 596070 17152171 ~ 17153593 (-)
G105577 NA non-coding downstream 631399 17117751 ~ 17118264 (-)
G105549 NA non-coding downstream 694041 17052505 ~ 17055622 (-)
G105759 NA non-coding upstream 59355 17828622 ~ 17831148 (-)
G105768 NA non-coding upstream 105569 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 107765 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 159565 17928832 ~ 17933470 (-)
G105806 atp7a non-coding upstream 209045 17978312 ~ 17980298 (-)
kif3a kif3a other downstream 1116 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 171852 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 492731 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 598047 17142082 ~ 17151616 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other downstream 786127 16957643 ~ 16963536 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other upstream 14293 17783560 ~ 17795391 (-)
LOC120566288 NA other upstream 87817 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 217929 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 298158 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 516691 18285958 ~ 18314415 (-)

Expression


Co-expression Network