map1lc3cl (LOC103356239,LOC101159112,LOC100701181,LOC102781115,LOC101482496)


Basic Information

Item Value
gene id map1lc3cl
gene name LOC103356239,LOC101159112,LOC100701181,LOC102781115,LOC101482496
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22877797 ~ 22879471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813836.1
TTCCACCCGAGGGGACTTCACTGTCAGCCCGGGAAAGACCGCCGCGCCACCTCCATCACCGCTGGTCTCTGCAAACCACCCCAAGTAACAAACAAACATGGCTCCTTTTGAGAAATCTATGGAGATGATGCCCTTCAAGCAGAGGAAATGCCTCGAGACAAGAAAAGATGAAGTGTGCAGCATTCGGACAAAATTCCCCAACAAATTGCCTGTCATTGTTGAACGTTACCTCCGTGAAAAGACTCTCCCCCTGTTGGACAAAACTAAATTCCTGGTTCCCTTCGAGCTCACCTTGGGTCAGTTCCTCTGCCTGCTCAGgAATAAGATTGCCCTGGACTCAACCCAGGCTCTGTTCCTCCTAGTGGCAGAGAAGAGCATGTCCTGCATGTCCTCCAGCATGGGGGAGGTTTATTCCCGCTACAGTGACACTGATGGCTTCCTCTACATCACCTACGCCTCACAGGAGATGTTCGGAGCACCTCAAACAGCAACCAGACCGCCCTGCTGAACCTGAAGCACATACAATTAACTGAACCGATAGTGGAGACACCACACAACCAAACTGGAGGaaaaaagaaccaagcagagaCTGTTTTTGTCCAGTTTTTTTTAGCCCCAAATTGCATATCAGTCTACCTCATGAAACTTTCTGGACTTTCAAATGCAGCAAATTACTCTTTTCTTCATGCTCTGCCGCTAGGACAAGGCTcaccatgatgatgatgatgtctttGTTTTAGACAGAGTGGTTGTTAGATTCAATACAGATGCAATAGTTCTCCAAAATGTTAAAGAAATTGGGATGATTTTCTTGGTCTGTTCTATGTCTTTGCTGGTCAAACATGTTCATATCTGCCCTGTAAAACCACCACCTTCTCCACTCTACACAAACAGGGTCAATGTCTTGCTGGTAATCAGACTCCTTTTTTTAGCACTTATCTCCCCCTGTCGTCTCTCCTTTCTTCGATTGCCTCTTCATCCTCGTCCTTTCcttaaaaatgtgaaactatGCTCCGGACTCTTGAGGCCCTCATTGAAAACCTGGATGTCACTTGAATGCTGAATGGTTTGTTCTGTATCCAGCTGTCAGTagagcaaaaaataaatcaatatcattttaa

Function

NR:

description
microtubule-associated proteins 1A/1B light chain 3C-like

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813836.1 True 1121 mRNA 0.46 4 22877797 22879471

Neighbor

gene id symbol gene type direction distance location
ttc9c ttc9c coding upstream 15718 22858625 ~ 22862079 (+)
LOC120566951 LOC102310073,LOC103356241,LOC104942682 coding upstream 22096 22847118 ~ 22855701 (+)
LOC120567435 NA coding upstream 54767 22815142 ~ 22823030 (+)
LOC120567165 LOC100699826,LOC104947027,LOC103356244 coding upstream 71974 22794685 ~ 22805823 (+)
LOC120567166 NA coding upstream 83589 22789614 ~ 22794208 (+)
LOC120566913 LOC107377419,LOC103374189,LOC100712009,LOC106536320 coding downstream 62991 22942462 ~ 22949531 (+)
LOC120566541 LOC102082053,LOC102202526,LOC101485142 coding downstream 99848 22979319 ~ 22987555 (+)
ccdc88b LOC103366585 coding downstream 119055 22998526 ~ 23039438 (+)
fermt3b fermt3 coding downstream 278898 23158369 ~ 23173854 (+)
zbtb3 LOC105026702 coding downstream 297367 23176838 ~ 23182934 (+)
LOC120566955 NA non-coding upstream 2699 22867079 ~ 22875098 (+)
G107164 NA non-coding upstream 11596 22865968 ~ 22866201 (+)
G107161 NA non-coding upstream 20929 22856655 ~ 22856868 (+)
G107149 NA non-coding upstream 53935 22823601 ~ 22823862 (+)
LOC120567160 NA non-coding upstream 152144 22723025 ~ 22725653 (+)
G107170 LOC103356238,LOC104934092,LOC105928696,LOC104942686,LOC106516021 non-coding downstream 4606 22884077 ~ 22887891 (+)
G107182 LOC102781801,LOC102213887,LOC101468765,LOC100701998,LOC103374192 non-coding downstream 35823 22915294 ~ 22916077 (+)
G107185 NA non-coding downstream 40382 22919853 ~ 22956899 (+)
G107187 ganab non-coding downstream 46338 22925809 ~ 22926736 (+)
G107191 ganab non-coding downstream 49798 22929269 ~ 22932162 (+)
G107163 LOC103356264 other upstream 12121 22862190 ~ 22865676 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 1408970 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 1526819 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 1594568 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 1930382 20934729 ~ 20947415 (+)
ubxn1 ubxn1,LOC103374193 other downstream 24284 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 71124 22950595 ~ 22997038 (+)
G107168 NA other downstream 75501 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 220554 23100025 ~ 23132685 (+)
tgfb5 LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458 other downstream 373284 23252755 ~ 23262261 (+)

Expression


Co-expression Network