LOC120567053 (LOC103356970,LOC107093447)


Basic Information

Item Value
gene id LOC120567053
gene name LOC103356970,LOC107093447
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 16509358 ~ 16513111 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813845.1
GCAGGACAGGCCGGACATGGTTGAGAGTGTGTCCAGCAGGTTACGTGTGTGTTGTGGTCAGTGGAAGACCCCGAGGCCTGGATCCTGATTCCTGCCTTGGCTGTATTTGAAAAGCAGAGGAGTGAGTCGGTGGGTTTGTCGGTGTGGAACAGAAGAAGTGCACTTTTCCTGTCCATTCAAGGGCATTGCTGGGGGCCCGAAGAATAGCTTTGAGCTGAGGCCTGTCTGTAAAGCGGGCGGCCTCATGGACCCTCGAAGACGTGTAGGGCTTCACGGCAGGGGATGCATCAGCTGACAAGTCCCAGATCTGAGCTCACGCAGCCATGGGCGACTGGAACCTGCTGGGAAAGCTCCTCGAAAAAGCCCAGGAGCACTCCACCGTGGTGGGGAAGGTGTGGCTCACCGTCCTGTTCATCTTCCGCATCCTGGTCCTGAGCGCCGCCACGGAGAAGGTGTGGGGCGACGAGCAGTCGGGCTTCACCTGCGACACCAAGCAGCCGGGTTGCGAGAACGTGTGCTACGACATCACTTTCCCAATCTCCCACGTCCGCTTTTGGGTTCTGCAGATCATCTTTGTGTCCACGCCCACGCTGATCTACCTGGGACACATCCTCCACCTGGTGCGGATGGAGGACAAGCATAAAGAGAGGGACCAGCAGATGGAACATGCACATCACTCGGACAAGCAGGGCCTCATTGTGGATGGTAAGCAAAAGAAGGCTCTGGTGAGGGACAAAAAGGGCAGAGTGCACCTGCAGGGGGAGCTCTTGCGCACATATGTCTTTAACGTGGTCTTTAAAACCCTGTTTGAGGTGGGCTTCATTGTGGCTCAATACCTCTTGTACGGCTTTAAGCTGAAGCCCATGTACACATGTGACAGACCGCCCTGCCCCAACGTGGTAAACTGCTACATATCCCGTCCCACAGAGAAAaccatcttcatcatcttcatgcTGGGAGTGTCCAGCGTGTCTCTGCTCCTCAACCTCGTAGAGGTCTACCACCTGGGCTTTACCAAGTGTCGCCAGGGCATCAGCTTCAGGAGAGCTCACCAGTCCTCTGCGAGTCTCCCCAAGGAGCCCGGCGAGGCCGCGGTGCCGTACGCGCCGAGCTTCGACGACTACTTCCACCAAGTCCAGCCAGCCTACCCGCCCGTACCCAGCTACAACCTCTCCCCTTTGTCTGAGGACACAGACTCGTCGTTCCACCCGTACCACAGCAAGGCGGCATACAAACAGAATAAGGACAACTTGGCGGTGgagaacagcagcagcaagtCAGAAGAATGTGACCTGAAAGGAAAGAAGGGAGCAGGATCGGCCCCTGGGTCACCCACGCAGGCCAGGCCGGGCCGCGGTGCCAAACACAGCGGCAACAAGACTAGAATAGACGATCTGCAGATATGAGGAGGTTTCTGTTCCTCTGAGGGTGTCTTAAATTGCTATGAGGGGATCGTATGTTGTTTGGAAGCattcatactgtacatgctgaACTGACTCCCCTTTTTAAGATGGCACAGGTTTGACTCATTCCAACTTAGAAGGGAGTGATATTCACGGGGCACACGGAGAAGCCGCAGTTGTTCAGTAATGTGTAAAGACTGACGTAGGTCAATAATCACACTTCTAATGAACTTAGACCTCTTGAAGGAAGTCCGGCTCCACTGAGAAGTGTCCCACAGCTGGCTTTTCATTTGTAAAACTTAATTGGATTTCACATTAGACTAGCATTTATGGTATACGGTACACCATTTGTCACAACACCATATTTTCAGTCAATGTTgtgaagtattttttttttatttttattatgtatGGTATGAATCTCTCCACTATTCACTATTGTCACTGAGAACACAATCGACAACAAAGTGCAGTCTGCTCAGATTTTTACATCAATGTGAATGAacccaacaaaaaaataaaaagaaaatgcgcCTCTGTGTATAAAGTTGCCCAAATAATGGGAACGGAATCCAGGGCAGAAACTTGTTGACAGCATTTGAGGAAATCAGATAGGGTGAATAGTTAAATTGAACTTCCTTTAACTGTTTTGACAGCACCATTTAGCATAGTTCACTTGCTTAGACTTGAAGTTCAAAGTTGCGCAATACCTGACAACACATTGGACACTGGAAATACTTTACCTAATTCCAGGACGCGCCTCAAAAGAAATTGCACTGGTCTCAGGAGTTCCCGCATATGTATTGCCTCTTTTTACTTTGACAGCCAGCAAGTACATAATTATAAGCACATTGTTTTGTTTAGATCTGTGTTTGTGCCGTTTGTTTTCTGTAAAGCACTTGGTGACAACCATATTTGTTAAACTGCCTGAAATAAATCTGTCTTAAATTTGCAAA

Function

NR:

description
PREDICTED: gap junction alpha-3 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813845.1 True 2359 mRNA 0.50 2 16509358 16513111

Neighbor

gene id symbol gene type direction distance location
ergic1 ergic1 coding downstream 95027 16395235 ~ 16414331 (-)
npy7r LOC104967498,LOC104930063,LOC103356978 coding downstream 179847 16324573 ~ 16329511 (-)
prelid1a prelid1 coding downstream 185981 16316611 ~ 16323377 (-)
fam193b fam193b coding downstream 199942 16298820 ~ 16309416 (-)
LOC120567264 ddx41 coding downstream 211996 16287081 ~ 16297362 (-)
gjb1b LOC107093452,LOC101485490,LOC102291952 coding upstream 450 16513561 ~ 16518060 (-)
LOC120567296 NA coding upstream 5043 16518154 ~ 16526951 (-)
LOC120567142 LOC104959287 coding upstream 17159 16530270 ~ 16533180 (-)
LOC120567144 LOC104923178 coding upstream 20171 16533282 ~ 16537447 (-)
eda NA coding upstream 24622 16537733 ~ 16549973 (-)
G105417 NA non-coding downstream 3080 16466448 ~ 16506278 (-)
LOC120567052 NA non-coding downstream 12036 16496457 ~ 16497322 (-)
G105337 LOC103356977,LOC104930064,LOC102195804 non-coding downstream 170340 16334273 ~ 16339018 (-)
G105332 NA non-coding downstream 244939 16264201 ~ 16264419 (-)
G105331 NA non-coding downstream 245495 16263231 ~ 16263863 (-)
G105433 NA non-coding upstream 174368 16687479 ~ 16687729 (-)
G105435 NA non-coding upstream 174945 16688056 ~ 16688590 (-)
G105436 NA non-coding upstream 175972 16689083 ~ 16689305 (-)
G105443 NA non-coding upstream 242225 16755336 ~ 16755558 (-)
G105549 NA non-coding upstream 539394 17052505 ~ 17055622 (-)
unc5a unc5a,LOC102788949 other downstream 405564 15960197 ~ 16103794 (-)
hnrnph1 hnrnph1,LOC102791917 other downstream 637409 15866060 ~ 15871949 (-)
tspan17 tspan17,LOC103361971 other downstream 890250 15598343 ~ 15619108 (-)
G105086 NA other downstream 1374622 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 1400760 15089404 ~ 15108598 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 11245 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 444532 16957643 ~ 16963536 (-)
tmsb1 NA other upstream 628971 17142082 ~ 17151616 (-)
frmpd3 frmpd3 other upstream 653785 17166896 ~ 17256932 (-)
nexmifb kiaa2022 other upstream 1009030 17522141 ~ 17577811 (-)

Expression


Co-expression Network