neil3 (neil3)


Basic Information

Item Value
gene id neil3
gene name neil3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 30090948 ~ 30102919 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813901.1
caatggtagtgtgtgaatgctgtggccatagtgggaaaaaGCCCGGGTACATGCATTATGCAACATTGTATGCAACGCCTATTTCCGGATACAAACCGTACTACGCATGCGCGAAATTGAATCCAGTGGCGGGGAATCAGGACGACAACAAACTTGTATGATATTGCTAACATTCAAACGCAGAAGGGGACAGCTTTTACTGTTActtacattatttttaatatctTAAGTCGAAGATGGTTGAAGGTCCGGGCTGTACATTAAACGGAGAGAAAATCCGTTCTAAAGtccaaaaaggacaaaaactgaAGGAGATCAAAGGCAGTTTGACAACATCCACCAGAAACAACTCCGAGGGAAATGCCTTCCACAGGTTTAATGGTTGTCCGTACACTGGAGTTGAAACTCTGGGCAAGGAGCTCTTCATGTACTTCGGTCCAAGAGCGTTGAGAGTCCACTTTGGTATGAATGGATCAATGCGTATAAACCCTgctgagaggaaggagaggactGGCTCCGTACCAGTGCTGGAAATACACCTGACTAACGACATTGTGTGCTTCTTTGACAGCACTGTGGAAATAAGGTTGACAGAGGACTGTGAGCAAAGGGTGAGGGCCATGGAGAGTCTGGATGTGTGCTCCTCCAAGTTCAGCTTCTCCCGCTCCGAGGAGGCAGTGAGGAGCCAAAGTAGCAGGATGCTCTGTGACGTTCTCCTAGACCAGGCCGTCATGCCAGGCGTCGGCAACATCATTAAAAACGAAGCCCTGTTTGACTCGGGCCTCCACCCAGCCGTGAAGgttcAACAGCTGACAGACGAGCAGATCCACCACCTGGTGAAGATGACGCGTGATTTCACTCTTCTGTTTTACAAGTGTCGCAAATCTGGCTCTCCCCTCTACAAACATTACAAAGTCTACAAACGTCCCCAGTGTGGCCAGTGCTTTCATGTCATCACAGCCTGTCGTCTTGGAGACAACGGCCGGATGACTTACTTCTGCCAGAGCTGTCAGAAGGGAGATCCCAGCGGGGTTGACATCAGTAAGCTCCCAGTCAGAAACAGTTTGATTAGCTGGGCCTACAAGGAGAGAACCAATGACAACGTGGCtaagaaggaggaagaggactgGGCCTGTCAACTCTGCACGCTCATCAACCAGCCAGCAGCAAAAGCCTGTGATGCCTGCCTCACTCCAAGACCTGAGGTCCACGAAGATGACGTTAACACTGAGGCATCACCCTTCAACACTGATTTGATTAAATACCCCTGCACTGCCTTCAAGAAGCCACAAGAGGAGCTCAAAGTCAACTGGAGGAGTGCATTCGGCACTTCCACCCTTGTTTTCTCTGACTTGAGCAAGAAGCCAAAGCCTGTAAACTCCCCACTCTCCCCAGCCGGCAGTCATTTGAATTCCTTGGCGGCAGAGCGGGGTTTATATAAATACAGCGTCTGCCAAGGGACAACAAGCCCCAATTACGCCTCTGGTGGCTGGCAGAGGCAAAGTGCCGAGCTCTCCAACGGGGAATCACTGGCCTCCTACAGTCACCCATCCAAGAAAATGAGAATTGATCACAGTCCCTTTCCCGGTAACAATGCTCAAAATGGAGCCCCCAACTCTGGTATGCGCAAACTAGAAGCGACAAGCCACAGCTCCTCCATTTCTTCCAGTCCCAGTGTCCCTTGTTGTTCTTCCCATCGTCGTCCAGCTGTCCTCAGAGCCGTCCACAAGGAGGGGGAGAATAAGGGACGACAGTTCTATGCCTGCTCGCTTCCCAGAGAGACAAAGTGTAACTTCTTTGAGTGGGCTGACTTGCATTTCCCTTCTTGTCACCATGGGAAACGCTGTTTAATGAGGACAGTTCTGAAACTGGGACCCAACAATGGCCGGAATTTCTATACCTGCAGCTTTCGAAAGGGCAAACAGTGTGATTTTTTCCAGTGGGCAGAGAATGGACCAGGGGTATCCATCCTCCCTGGTTGTTAGTGTGTTTTAGCAATGCATTACTTCTACATGAAACCCAGATGCCTATATGTCATAAATTAATGTGTATATAAATTAATGGACATGGAAAGGGAACCGATAACTCATTAACGTCGTGAAATTTACAGATTTGTACTAAACTATACATTTATTGGAGAATAACAAAATCAACTGTATGACCTTCAGAGCATGCTCAACCACGTTTGTACAAAAATGTTAGCTAATGTACTTAATCAAGTGTGTAATCTCATTTGGTTTGTATCCTGTCCTATCAATGTCCATCTTTGAAGATGTATGTTTCACGCGTGCGTTTGTTGTATAACGTTTTTTTAGTGATTGCTGGaaggtgtttttgttgtttcgtCAATTGTTGGAGCATGTGATGCAAGAACAATTTCCTTGTAAATGACAAGTTTCTCATCTTAATTAAATTTtcacattgtt

Function

symbol description
neil3 Predicted to enable DNA N-glycosylase activity and DNA-(apurinic or apyrimidinic site) endonuclease activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in chromosome. Orthologous to human NEIL3 (nei like DNA glycosylase 3).

NR:

description
endonuclease 8-like 3

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10569 NEIL3; endonuclease VIII-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813901.1 True 2426 mRNA 0.47 10 30090948 30102919

Neighbor

gene id symbol gene type direction distance location
si:dkey-237h12.3 tenm3 coding downstream 62810 29881190 ~ 30028138 (-)
tdo2a tdo2 coding downstream 216300 29867532 ~ 29874648 (-)
asb5a asb5,LOC103355623,LOC101464329,LOC100697054,LOC107095814 coding downstream 231836 29852829 ~ 29859112 (-)
spata4 NA coding downstream 238264 29847910 ~ 29852684 (-)
gpm6aa gpm6a,LOC103355621,LOC104917912 coding downstream 249510 29819789 ~ 29841438 (-)
pdgfc pdgfc coding upstream 36890 30139809 ~ 30184692 (-)
ppid ppid coding upstream 434908 30537827 ~ 30548407 (-)
LOC120566929 clg2h4orf45,LOC104948239,LOC102200624,LOC101472142 coding upstream 450257 30553176 ~ 30555189 (-)
fstl5 NA coding upstream 696318 30799237 ~ 30974285 (-)
anxa5a anxa5 coding upstream 1168307 31271226 ~ 31300495 (-)
G108600 NA non-coding downstream 314527 29723824 ~ 29776421 (-)
LOC120567321 NA non-coding downstream 340412 29553435 ~ 29750536 (-)
G108560 NA non-coding downstream 816994 29273594 ~ 29273954 (-)
LOC120567081 NA non-coding downstream 1162043 28833175 ~ 28928905 (-)
G108524 LOC104954097 non-coding downstream 1409849 28678279 ~ 28681099 (-)
G108702 NA non-coding upstream 172945 30275864 ~ 30282627 (-)
G108718 NA non-coding upstream 284602 30387521 ~ 30387854 (-)
G108722 NA non-coding upstream 299741 30402660 ~ 30403036 (-)
G108772 rapgef2 non-coding upstream 549951 30652870 ~ 30654526 (-)
G108785 NA non-coding upstream 630640 30733559 ~ 30733770 (-)
cxcl14 cxcl14 other downstream 1282954 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 1295440 28714863 ~ 28795508 (-)
LOC120566547 NA other downstream 2052248 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 2067719 28021737 ~ 28023229 (-)
LOC120566991 NA other downstream 2135254 27952256 ~ 27955694 (-)
gask1b fam198b,LOC102776406 other upstream 244059 30346978 ~ 30356856 (-)
G108777 rapgef2 other upstream 557993 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 566612 30669531 ~ 30670849 (-)
LOC120566409 limch1 other upstream 1282171 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 1316960 31419879 ~ 31485976 (-)

Expression


Co-expression Network