shisa3 (shisa3,LOC102786300)


Basic Information

Item Value
gene id shisa3
gene name shisa3,LOC102786300
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27263759 ~ 27267957 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814005.1
TCTATACGCTGCTGCACTGTGGGTCTCCCCTCGGGCAGAATAAACTCGTGAAGatcatgtactgtatgcatgttATTTGGGCAACTTTGCGGTTATGGGAATAATCGGCACCGCTCCGACCACTACCACCACGTGAACGCGCGCGTCCGTTAAATGGGGGGTTACGTGCGCGCGTGCACAGCTAGAGTCACAAAAGCAGCAACTCTTCAGTGAGGTGGGCGCACAACTTCTGCACCGACAACAACAAAACGACCGCGGGAGTAGGCTAACTCGATTAGGAACAGGAGAAACCAGGAGCAGATTGTTGGACATGTTTGGATGAGAAGAAAGTTCAGTGAtgatattttaaaaagtgacagaagACTCAATTAGCCTATAAGGATTTTCTCAAATTGCAATTTGAGaacttttggctcaaaacgaTTCGGATGGTGTGAAGATGACGGTAACATAACTGTACACCTCTGGATCGCTGCGTTTCTCTTCCAGTAAATTCATCTCAATGAAGAGTCTGTAACCCGGACCGACACACTCGGCGGCCGGGAAACTGAAGCCCACAGGACGTAAACCCCCACGGCTTGCCGGGATGGTGCGCCTGCTGAACTGCCTGCTGCTGGGATATCTGACCTGGAATCTGCGGATATCGGACGCACAGGGGGAGTACTGCCACGGCTGGCTGGACGCTAATGGGAATTATCACGATGGCTTCCAGTGTCCGGAGGACTTTGACACCATGGACGCCACCGTGTGCTGCGGCTCCTGCTCGCTGCGCTACTGCTGCGCGGCCGCGGACGCGCGGCTTGACCAGGGCAGCTGCACCAACGACAGGGAGGTGGAGAACACCGAGTTTGCAGCCCAGCCCATCTACGTGCCCTTCCTAATGGTGGGAAGCATCTTTGTCGCCTTCGTCGTGGTCGGCTCTCTGGTGGCCGTCTACTGCTGCACCTGCCTGCGGCCCAAGCAGCCGACCCAGCAGCCCATTCGCTTCTCTCTGCGTAGCTGTCAGGGCGAAACCATCCCCATGATCCTCACCTCCGCCCCCCCGAGCCTCCGCGCCCCGTCGCGACAGTCCAGCACGGCCACCACCAGCTCCAGCTCGGCTGGCGGCGGCAGCTCCATGCGGAGGTTCTCTCTCGGAGGTCAAGGGCAGCAGCACGGTTGCCTGGTGTCTGCCACCGTCTCCTCGTCAGCCTCCACCCCCACCCAGACCCCTCAGACTctgcctccacctccacctcccccctACACATCCCCACCAGCACCCATGTCAGCAGGCACCCAGCACTCGTTGCCCTCCACCCACACTCAGCTACATCTCCACCAGACCTCCATGCCCTCTCAGAGCTTCCTCCTGCCACAGCAGTACTTCTTCCCCCTGCAGCCCGACGCCTTCTCAGCGGCCAAAGGCTTCGCCGACTTCGGACAGAGCTGACTAGGCTCCCAGCAGGGGAAGTAGAGGGAATACAAGATTTGTACATGGTTGGCTGTGAGCCTGCGAGGACAAACACACTACAACACAGCTGCTGGTGTTTGGGTGGAAGGCCTGGGCCGACTGAACAGACACAGAGAGCGCGACAGAAGGACAAGGGGATAAAGTGGGACAATGCTGCGTGGCCTGAGGCGCTTCCCCCTTCTGCATCACAGGACACATCAGAGTTCAACAGACCTGTTAGAGGCAGCAACAGTTTTGAATCTTGTgcacttttattttatactgtaaacaGACCTCATTAgccttatattttatttttttatacggGCTGCTTTTCAAGGTGACATCTTACAATACAGACTAAAATCTTACACATTTATCACAAACCTTCCtcaagaaacaaaaaaactgaaatactgcACAGGCCGGCACCGACACTGTAACTCTGAGCATTGTTTCATTTTTAGAAATAGATGTTGGAAACCAGGGAAATATTGTTTTTTGACAATCGCAAGGACCTCTGAAAGAGGGGAGGACTTGATACACAAAAGGACATTTTTATTTAGGAGGAAATGGACTTTTATAAGATGTTGTACAGGCATTATACCCAGAGTAGGGTTGTCATATTGATTCCCTAATTTACAGCAAATAAAATGTTGTCTCTCAGTA

Function

symbol description
shisa3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA3 (shisa family member 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814005.1 True 2101 mRNA 0.53 2 27263759 27267957

Neighbor

gene id symbol gene type direction distance location
LOC120567492 NA coding upstream 123305 27140336 ~ 27140454 (+)
LOC120566768 enox2,LOC101473670,LOC100709872,LOC102784575,LOC102307254 coding upstream 194544 26844687 ~ 27069215 (+)
mars2 mars2 coding upstream 776928 26483695 ~ 26486831 (+)
gla gla coding upstream 805847 26451784 ~ 26457912 (+)
glra4a LOC106949970,LOC101466695,LOC106920031,LOC106514543,LOC108231179,LOC103151720,LOC100711741,LOC103353264,LOC107377714 coding upstream 844795 26357802 ~ 26418964 (+)
LOC120566438 NA coding downstream 153724 27421681 ~ 27426082 (+)
cops6 cops6 coding downstream 522331 27790288 ~ 27796688 (+)
gpc2 gpc2,LOC104944563 coding downstream 569636 27837593 ~ 27849601 (+)
LOC120566981 NA coding downstream 624110 27892067 ~ 27905066 (+)
LOC120566983 NA coding downstream 726508 27994465 ~ 27996914 (+)
G108229 bend4 non-coding upstream 9046 27252203 ~ 27254713 (+)
LOC120567287 LOC107712283,LOC107663761,LOC107746645,LOC107662224 non-coding upstream 155489 27107475 ~ 27108270 (+)
G108159 NA non-coding upstream 192778 27070289 ~ 27070981 (+)
G108169 NA non-coding upstream 196920 27066625 ~ 27066839 (+)
G108168 NA non-coding upstream 197603 27065334 ~ 27066156 (+)
G108233 NA non-coding downstream 1651 27269608 ~ 27274545 (+)
G108240 LOC107680621 non-coding downstream 19257 27287214 ~ 27300468 (+)
G108246 NA non-coding downstream 41132 27309089 ~ 27314358 (+)
LOC120566664 NA non-coding downstream 219593 27487550 ~ 27704230 (+)
G108307 NA non-coding downstream 437278 27705235 ~ 27710738 (+)
timm8a timm8a other upstream 784462 26476796 ~ 26479297 (+)
btk btk other upstream 787189 26461288 ~ 26476570 (+)
sept6 sept6,LOC106945475 other upstream 1953541 25291607 ~ 25310218 (+)
rpl39 NA other upstream 1981552 25279568 ~ 25282207 (+)
grxcr1a grxcr1,si:dkey-109l4.6,LOC102787492,LOC106600617,LOC107601454 other downstream 119689 27387646 ~ 27393621 (+)
LOC120566985 NA other downstream 708370 27976327 ~ 28046891 (+)
fgfrl1a fgfrl1,LOC104949359 other downstream 1215720 28483677 ~ 28558216 (+)
maea maea other downstream 1305710 28573667 ~ 28681112 (+)
gria2b gria2,LOC106611560,LOC106604527 other downstream 2938028 30205985 ~ 30282627 (+)

Expression


Co-expression Network