slc16a2 (slc16a2)


Basic Information

Item Value
gene id slc16a2
gene name slc16a2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22718894 ~ 22743071 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814009.1
TTAACCTCTCCATCCGACCAGACATCAGCACAGCATGGGAATCAACGGGCTAGATAATCAAGCGCAGCCGTCCAGCGGAGGGTCCCGGACGGAGGAGCCAGATTCTCAGACGGAGCAAAGAGAGGCTCCCCAAGAAGCAGACCGGAGCAAGGCTGACCAGGCGGCAGGCAGCGAGTGTAAAATCGTGCAGGAGGACAGCACCGTGCAGCTGATCGAGGCCGGGAGCAAGCCGCCCCTCTCCCCGGCTTCTACATCTGAAGCGGTTGTCCAGGTGGAAGAGCATGGCCACGGACCCGCATTCGTCCCACCAGAAGGAGGTTTCGGCTGGCTGGTGGTTTTTGCAGCAACCTGGTGCAATGGGTCGATCTTCGGCATTCAAAACTCTTTCGGCATCCTGCATATGATGCTGATGAAGGAGCATGTAGACCCAGACGACCAGACGTCTCAGTTCAAAGTGGCATGGGTTGGGGCCCTGGCCATGGGCATGATCTTCTTCTGTTCACCGGTGGTCAGCATGTTCACAGACCGCTTCGGCTGTAGGAAGACAGCTGTCAGCGGGGCAGTGGTGGCTTTTATAGGGCTGCTCAGTACATCCTTTGCAAACTCCTTGAGCCTTCGCTATTTCACATATGGGATACTGTTCGGCTGTGGCTCCTCATTCGCCTTCCAGCCCTCGTTGGTCATCCTCGGCCACTACTTCCGCCAGCGCCTGGGCCTGGCCAACGGTGTGGTGACGGCCGGTGCCAGCCTCTTCTCCATGGGCCTCCCGGTTTTTCTCAACAAGGTAGTGGAACCCCTGGGCCTCAGCAGGACCTTCCAGATCCTCAGCCTCTTCATGCTGGTCCAGGCCCTGCTGGCGCTGATGTTCAAACCTTTACTCCCTGCTGGAGGAGGCATGGGACCCCCAGGCATGGGTCCTGGCCCTGCCAAACCCCAAACCCAGCCAGGGTCCACCGCTCAGGAGGGGAGCAGGTGGAGCAGGGTCCTGGATGGGGTCAAGAAGTACTTCAACCTGCGTGTGTTTCACATCGTGACATACCGGGTGTGGGCGTTTGGAGTAGCCACAGCTGTACTGGGCTATTTCGTGCCATATGTCCATCTGATGAATTTTGTGAAGGAGCAGTTCAAGGGGACCCAGAAGGAATGGGTACTCCTGGTTTGCATAGGAGCTTCATCTGGGGTGGGACGCCTCGCTTTCGGGAAGCTCGGAGACCTCATTCCTGGTCTTCAAAAGATCTACATGCAGGTGGTGTCCTTCATGGCTCTGGGCCTGATGTCCATGATGATCCCTCAGTGCTTGGCGTTCGAGGGGCTGGTGGTTGTGTGCGTGTTCCTGGGGCTGTGTGACGGCTGCTTCCTGACCATGATGGCTCCCATAGCGTTTGAGCTGGTCGGGCCCATGCAGGCTTCGCAGGCCATAGGCTACCTTCTAGGTCTCATGTCTCTTCCCATGACTGCGGGTCCACCCATCGCTGGTCTCCTACACGATTACTTTGGGAACTACACGGTGGCCTTCTCCCTGGCTGGGGTGCCTCCTATAGTGGGGGGTGTGGTGCTGTTCTTTGTTCCCCTGATACACCGCCGGCTCCAGGCAGCGGCGTCACCAGAGGAGACGTCCACAACTGCCCACATGCTGCCCACCGCCCCACCAGTGGGGGAGCCCAAGAGCTGCTCCAATGGAGACATCCTGCCTGGCTATACTGACGTAGAGACACACATCTGAGTCGCACTGAACAAAGGGATTCAGCCTACCAGCACCTTTTTCTTCATCCTTAGATTTCCCTCCTCTCAACCATGGACTTCCTGCTGGCTGACCTTTAACCCTCTCACCCTCCTGGACTCTCATGGGCTGTTTGTTATTTTCATGTGGAGAGAAATTGAAAAGGGCGCTCTGGCTACAAGCCACAGAGGGGACAAAAGAAGGCCTGTCAGCGTAGGATGATGGGAATGTATATGGAGGATAAGCACAACACAGTCTCAACAAGGATTGTTTAATCAGTGGGGACTCTGTAGTAACAAATACCTCCAAGAGGAAAGAAATGAAGAGATTTTAACCGACCGCATTAATTTTGCTACtttgaaaagaaatacaatgctTTGTTTCTAGATTCATATAAACAGATTGAGATAAGAGGCATTTAAGAATTGGTGAAGGGATAAATTCACACTTTCTTTATGTAGCACCTCATGCATCTACATTTCTTAacacaatgcattttatttagtttgtgtAGCTTGGGTGATTTGCTTTATTCTCTTCTGCTGTTTTCTGCTGTGACAGATAGAAGAGAAacctgttaaaggtcccatgacatggtgctctttggatgcttttatataggccttagtggtcccctaatactgtatctgaagtctctttcccgaaattcagccttggtgaagaa

Function

symbol description
slc16a2 Enables thyroid hormone binding activity and thyroid hormone transmembrane transporter activity. Acts upstream of or within several processes, including chordate embryonic development; nervous system development; and thyroid gland development. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; central nervous system; digestive system; eye; and hindbrain neural keel. Used to study Allan-Herndon-Dudley syndrome. Human ortholog(s) of this gene implicated in Allan-Herndon-Dudley syndrome and intellectual disability. Orthologous to human SLC16A2 (solute carrier family 16 member 2).

NR:

description
PREDICTED: monocarboxylate transporter 8

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08231 SLC16A2; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814009.1 True 2405 mRNA 0.53 7 22718894 22743071

Neighbor

gene id symbol gene type direction distance location
tsc22d3 LOC103390732,LOC104954424,LOC101161414,LOC103356417,LOC102306956,LOC102786303 coding downstream 310683 22375266 ~ 22408211 (-)
pcdh11 LOC104946172,LOC103356418,LOC101473199 coding downstream 703141 21884772 ~ 22015753 (-)
si:ch211-175m2.5 LOC104942593,LOC103358585,LOC101471829 coding downstream 1021811 21692687 ~ 21697083 (-)
LOC120566697 NA coding downstream 1097286 21619863 ~ 21621608 (-)
LOC120566537 LOC104958700,LOC103358614 coding downstream 1208891 21507069 ~ 21510003 (-)
LOC120567161 NA coding upstream 35334 22778405 ~ 22783217 (-)
dpf2l dpf2 coding upstream 87339 22830410 ~ 22840569 (-)
si:ch211-168f7.5 LOC103356264,LOC104942684 coding upstream 119077 22862148 ~ 22874782 (-)
ehd1a LOC104934092,LOC103356238,LOC105928696,LOC102204816,LOC101482200,LOC100701452,LOC104942686 coding upstream 141014 22884085 ~ 22899160 (-)
si:ch211-114c17.1 LOC103374192,LOC100701998,LOC102296932 coding upstream 167086 22910157 ~ 22918782 (-)
G107102 NA non-coding downstream 124 22713037 ~ 22718770 (-)
G107097 NA non-coding downstream 33436 22683733 ~ 22685458 (-)
G107072 mid2 non-coding downstream 113226 22601140 ~ 22605668 (-)
G107070 NA non-coding downstream 124013 22592660 ~ 22594881 (-)
LOC120566739 NA non-coding downstream 126648 22590860 ~ 22592246 (-)
G107160 NA non-coding upstream 113054 22856125 ~ 22856346 (-)
G107215 NA non-coding upstream 132425 22875496 ~ 22876459 (-)
G107220 NA non-coding upstream 185783 22928854 ~ 22973760 (-)
G107282 NA non-coding upstream 427077 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding upstream 436621 23179692 ~ 23181717 (-)
G107117 NA other downstream 26063 22691160 ~ 22692831 (-)
G107015 NA other downstream 598827 22119685 ~ 22120067 (-)
G106988 NA other downstream 928169 21790253 ~ 21790725 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 1531241 21178852 ~ 21187653 (-)
G106728 mif other downstream 1587924 21127838 ~ 21130970 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 247916 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 349494 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other upstream 386638 23129709 ~ 23134785 (-)
rnaseh2c rnaseh2c other upstream 441121 23184192 ~ 23187058 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 1141517 23884588 ~ 23988901 (-)

Expression


Co-expression Network