pola2 (pola2)


Basic Information

Item Value
gene id pola2
gene name pola2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22770570 ~ 22778164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814023.1
TTATTGTTTTGGGATGTGACGTAAGTTCCGGCCgccaacaccaacacacagcagcaaTTTTTCGCGGTAAAATGAAATAAGCATCTGACGTTCATCAGATTTATTCTGCCATCTAACGTGTAGCTTATTGATGTAGCTAGTATTTAGAAATCGCATTATTAATCAATTGGCTCGTCGGCATTGCTATGAAGTCAGagtacagctaacgttagctaccaaAGTATCATCAAAACATTGGACCGTCAGACGTTTTATCCTCCATAACTAACGTTACAAAATCTAGCTAGTAAAGATAACgatagagttaaaaaaaaacaatggcacTAGTAACCGGAGACAGCCTAAAATCAGAGCTGGAAATGTTCGACATACCCTGCCAAGATGACTCCGTCCTCGACAAGATGGTGGAGCAGTGTATTTGTAACAGAATACAGGCAGATGAGATAGTGCTGGAGTGGGTGGCGTACAGCACCACAAAAAATGGACTAAAACTCACCTTGGACACCCTGGAGCAATTTGAACATGAGGTGTTAAACAAGAGAAATAAATCCAAACAAATCCTCAGAAAAGAAGAAACTCATAACAGAACCAGAGACATCCACACAATACAGGACTTAATCAAagctgaggaagaggaggagaatcTACTAGATGCTTACTCTACTCCTGCTAAGggCTCTCAAAAGCGAGCACTGACCACTCCTGAAAACCCTCATTCAAAAAGAAGTGCCGCTCTGCTGGCCAGCCCGGGCCTGCTGCTGTCTCCTGCCAGCTTTTCTCCCAGTGCAACACCCTCACAGAAGTACAGCCAGCGAGGAGGGAAAGGGGAGGTGGTGGTTACATTCGGGGCTGTGCAGGGAACCCGCTGGGCAGGCAGGAAGGCTCCGGGCGCCGGCATCCAGCTGGAGCTCCTGGAAGGGCCTGAAGACTCCCTCCGCTGCAGCTACAAGTACATGTTCCAAAGGCTGCGCGATGTTCGAAATGTGTTGACGGAAAAGATAGAGGAGCTCGGCGACGGCCTCAGGTCTCACTTCAACATCGAAGAGTTCTCCCCCGTCTCTCTGCCTGCTCAGGACAGTATGACAGTGTTGGGTCAGGTTTGCTGCGACAGTAATGGCAAACTGAATGCACACTCTGTTCTTTTGGAGGCGGGACCGGAGCAAGGTGGTCAGCAAGTACCTGTTGACCTATCAGAGCTTAAAGAGTATTCCCTGTTTCCTGGTCAGGTGGTCGTGATGGAGGGAATGAACACAACAGGAAGAAAACTGATGGCTTCTAAACTCTATGAGGGAGTCCCTCTTCCTTTCTACACTTCGGAGGTGAAAACAGAGATGGATGAAGAGCCGATGAATGTACTGGTGGCATGCGGACCGTACACTCCCTCTAAcagtctgacctttgaccctctGCTGGACCTAATCAATGTCATTGTGAGGGATCGTCCTGATGTCTGCCTGCTGCTCGGGCCGTTTGTGGATTCCAAGCATGAACAAATTGAGAAAGCTCAGGTGACTGAGACATTTGAGGCCATTTTCTCAAGATGTCTCGAAAGCATTGTGGATGGCACCAAAAGTGTTGGCTGTCGCCTGGTGTTTGTGCCCTCCCAGAGAGACATCCACCATCATTTCATCTACCCACAGCCTCCCTTCACCCTGCCCAACCTCAGCAAGGACCAGGCCCagCGTGTCACCCTGGTCCCTGACCCCTGCACCCTGCTGATCGACGGTGTGACCTTTGGTTTGACGTCCACTGACATCCTGTTCCACATGGGCGCAGAGGAGATCAGCTGTGGCACTGGATCAGACAGATTTTCTCGCATACTGAAACACATGCTGACCCAGCGGAGTTACTACCCGCTGTACCCACCTGTGGAGGAGGTGAACATGGATTATGAGAAGTTCCAGAGCTTCGGACAGATGCCGCTGACCCCCGACCTCCTCATTATTCCCTCTGAGCTGCGCTACTTTGTAAAGGATGTGGTCGGCTGTGTATGTGTCAATCCTGGACGGCTGACCAAAGGCCAGGTGGGCGGGACCTACGGCAGGTTGCTGATTCAGCGCAGCGCTGCATCAGACGACGGGAGGAGAGGGAGCCCCTGTTTGGCTGCTCAGGTGGTGAAAATCTAAAAGGAAATTCCGATTTTTGAATGCTCATAACCAGGACCAGTGTGCAAGCAGCTTTGAGCGCTGTGTGTAaaatatgtaaacaaaaagctttaCTGTACTGTTGAAAGCATCTGGTGTATTTTTATATGGCAAACATGTGTCTGTTCGGAATATCAGTCCCACAGACACAACCGCAATAACAATCTCTCTTCAATAAATTATTGTCACTCTTTG

Function

symbol description
pola2 Predicted to enable DNA binding activity. Acts upstream of or within with a positive effect on cell population proliferation and fin regeneration. Predicted to be located in nucleus. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human POLA2 (DNA polymerase alpha 2, accessory subunit).

NR:

description
DNA polymerase alpha subunit B

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02321 POLA2; DNA polymerase alpha subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814023.1 True 2339 mRNA 0.49 18 22770570 22778164

Neighbor

gene id symbol gene type direction distance location
zgc:195212 NA coding upstream 269 22762485 ~ 22770301 (+)
si:dkey-34l15.1 LOC104919989,LOC104960541 coding upstream 8044 22754641 ~ 22762526 (+)
LOC120567158 NA coding upstream 16577 22743607 ~ 22753993 (+)
f8 LOC104960537 coding upstream 65549 22685286 ~ 22705021 (+)
zgc:152774 NA coding upstream 86398 22664890 ~ 22684172 (+)
zdhhc24 zdhhc24 coding downstream 6446 22784610 ~ 22788719 (+)
LOC120567166 NA coding downstream 11450 22789614 ~ 22794208 (+)
LOC120567165 LOC100699826,LOC104947027,LOC103356244 coding downstream 16521 22794685 ~ 22805823 (+)
LOC120567435 NA coding downstream 36978 22815142 ~ 22823030 (+)
LOC120566951 LOC102310073,LOC103356241,LOC104942682 coding downstream 68954 22847118 ~ 22855701 (+)
LOC120567160 NA non-coding upstream 44917 22723025 ~ 22725653 (+)
G107073 NA non-coding upstream 139200 22631079 ~ 22631370 (+)
G107050 NA non-coding upstream 355235 22415002 ~ 22415335 (+)
LOC120566464 NA non-coding upstream 373519 22390353 ~ 22397051 (+)
G107025 LOC104954424,LOC103390732 non-coding upstream 392230 22331012 ~ 22378340 (+)
G107149 NA non-coding downstream 45437 22823601 ~ 22823862 (+)
G107161 NA non-coding downstream 78491 22856655 ~ 22856868 (+)
G107164 NA non-coding downstream 87804 22865968 ~ 22866201 (+)
LOC120566955 NA non-coding downstream 88915 22867079 ~ 22875098 (+)
G107170 LOC103356238,LOC104934092,LOC105928696,LOC104942686,LOC106516021 non-coding downstream 105913 22884077 ~ 22887891 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 1301743 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 1419592 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 1487341 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 1823155 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 2418403 20351721 ~ 20352167 (+)
G107163 LOC103356264 other downstream 84026 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 125591 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 172431 22950595 ~ 22997038 (+)
G107168 NA other downstream 176808 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 321861 23100025 ~ 23132685 (+)

Expression


Co-expression Network