LOC120567165 (LOC100699826,LOC104947027,LOC103356244)


Basic Information

Item Value
gene id LOC120567165
gene name LOC100699826,LOC104947027,LOC103356244
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22794685 ~ 22805823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814025.1
ATTACGTGCTCCAGTAAAAGTGTATCTATACCTTCCAGTCGCCCCTCCCAGCAGAAGGCGCTCCCTGGTGGTCTTGTCTGTGACTTCAGGAAAACATCCCCTCCCATACGGAAAATCATAAAGTAGGGGATCAAATGTAGGACAGAAGGGACGAGAGCATGGTCTGAATCGAGggatgtttttttatatcataGCTGGCTGATgattcattttgtgtgtgctggAGTTTGAGCTCGCGGATGCTGCGAGGGGACTGACTCGTGCTGAGATGCGAATGACAGGCCAAACCTATCAAGCATCCTCCTGTATCGTGAATGGAGCCCGAAGCTAAATAGCTGAAAGACGATAAATCGGAAAAAGAGAGCCACAAGCCAGTTTGATCCAGTCTGTATAACGGGGACCGCACCGGCTGTGTGAGGAGGAGTGGCGGCGGCGGCGGTGGcggcggcggcagcagcagggacATGTTCTGAGCGGAGAGCCGGCGAGCGGCGGCGGCTGGCGGGATGAAGGCGCCGAGGAGACCGAGGCAGACGCGGCTCCTCCCCCGGTTCTGCGTCTGTGGAGTCGGTCTGCTCGCAGCCGCCTGGATCTTTAACTTCAACGATGTTACAGGTTCTAATGCACCCACTGTGGATCATGACATCTCCTTGTCAAAGAAAGAGCTCATGCAGcaagaaaaagacaacaatgaaaATGACAGTATTTCTAGATCCGCTATCAGTGATTTTCCTGAAGACCTCTTCACTCTGGAGCAGAAGAGACAGGGAGCGGTAGTCCTTCAtgttctctgtGCGATCTACATGTTTCATGCACTGGCCATCGTGTGTGATGTTTACTTTGTGCCATCACTGGAAAAAGTATCAGAGAACCTTCAGCTCAGTCAGGATGTTGCCGGGGCAACCTTCATGGCAGCTGGGAGCTCCGCCCCCGAGCTCTTCacctctctgattgGGGTGTTTATCACAAAAGGAGACGTGGGTGTGGGAACTATTGTGGGATCAGCTGTCTTTAACATCCTGGTCATCATCGGCCTCTGCGGCATCTTTTCTGGACAGACCATCTCTCTGAGCTGGTGGCCTTTGTTTCGTGATGCTGCCTTCTACATCCTGTCCATACTGGTGCTTATCCTGGTGATCTATGATGAAAAAGTATTGTGGTGGGAGACCATCATCCTGATCTCTATGTACGGAATCTACATAATCATCATGAAGTTTAACAGATCTCTGCGGAGCCTGGCAGAGAGACACTGCAGCAGGGCAGGTCAGCCATGTCTGAGCCGCCTGCGACGGACGACTGCTGTCGGAAACATTGGAGACTGTGACAACGACATGGTGCCGCTGAAGCCAGATTCTTGTGCGGTGGCCGGCCAGGACTCAGGGGTGGTGATGGTGGATGAGCTGCTGAACCTGCACCCCCACCAGCTCTCCTTCTCAGAGGCAAGCCTCCGCCTTCTCATTACCCCGCATTTCCCCCCCTTCACCCGCCTGCGCATGGCAGGACGCATGGTCATCAACGAGAGGCAGAGGCTGATTTGGGCCCGGGGTGGCCCAGAGGAAGGGGGAGCTTCGGGCGAGGAAGGTTCGGGTGCTAACGGATCGTGGGGGAGGGAGAACAGGACGGTGGCCGAGGGAGACAAGCAGCCactggagggagagagggagaggggtaAAGAGACCGGGGAAGAGACAGGTGGGGTAGCACATcctgaagaggaagaggaggaagagcaggaggaaggagaggaggagaacaCTCCTTTCAAACCCTTCGTCCTGCCACATGGTTGGTGTGTGCGTCTGAAGTGGCTGCTCTCTTGGCCCGTGAGCGTCCTACTCTACTTCACCATCCCCGACTGTAACCTGCCGCGGTGGGAGCGCTGGTACCTGCTCACCTTCCTGTCCTCCACACTCTGGATAGCCCTATTCTCCTACCTCATGGTCTGGATGGTGACCATAATCAGCTACACACTTGGAATCCCAGAAGTCATCATGGGCATTACTTTTCTGGCAGCCGGCACCAGTGTCCCTGACTGCATGGCCAGCCTCATCGTTGCTCGACaagGGATGGGCGACATGGCTGTTTCCAACTCCATTGGCAGTAATATCTTTGATGTGCTTCTGGGCCTGGGCTTCCCCTGGGCCCTGAGGACTCTCATTGTCAGCTACGGATCAGTGGTGACAATTAACAGCAGAGGCCTGGTGTACTCAGTGATTCTTCTGTTGGCCTCAGTCATACTCACTGTCCTGTGTGTCCATCTGAACTGCTGGAGGTTGGACCGCAGACTGGGACTCTGTCTCATACTTCTCTACGCCATCTTCCTCCTCTGCTCCATCGGCTTCGAGAGTTTGTAGAGGACATGCACACTCCCTGTACACGTGCACGCAGAGTCATGGCCCGACTTGTTTTCCACATTCAGTGCTGCCGTTATTCGTTAAATGTACAGACCGATGAATTTTCATTTCACTTTAAGGGTGGCTGTACATGTTTAAGCAGCGTTACTTCAACACCGGCTGCCTGAAAGCTacattgtttacctttgataAACGAGTATTTTACATAGTTTTGTACCGAGCACCTCCAGCCCAGATTTTGTGAAATCAGACCCAACTGATTATGCACTATGTTTCACAACAAATTTAGAAAGTATTGAATTTCTATTCTGAAACAAAGAATATTGTATAAGGAATCCTAAAGTCGGTTCATTTACTTATTAATACTTTATGACTGCCACGAGTAACGTCAATGACCAGATGATTACACATGTAAGTTTATATAGATTGCTTCTCATtgtgtaaagttattttatgtacatttttatGTCAAGTTTTCATCACGCCTTTGTATCTGTAGTTGCAAACAGCAAAGCATGGCTGATCATCACGCTGCAGTTAATTGCACTGAGCCACTGTTGTCTTGGCCTTGTACATAAcgtaacacccccccccccctctttatTCCAAACTTGTCAGCACAGAGGTGGTGATTTTGTGCTGGAATAAGGCGACTGTATGCTACAAGGTGTTTATGAATGTCTGTGTTTGGAGAGAGATGTTGAGTGTATGTTGTTAagttcaataaaatgttttgttctGTGAGGTT
>XM_039814027.1
ATTACGTGCTCCAGTAAAAGTGTATCTATACCTTCCAGTCGCCCCTCCCAGCAGAAGGCGCTCCCTGGTGGTCTTGTCTGTGACTTCAGGAAAACATCCCCTCCCATACGGAAAATCATAAAGTAGGGGATCAAATGTAGGACAGAAGGGACGAGAGCATGGTCTGAATCGAGggatgtttttttatatcataGCTGGCTGATgattcattttgtgtgtgctggAGTTTGAGCTCGCGGATGCTGCGAGGGGACTGACTCGTGCTGAGATGCGAATGACAGGCCAAACCTATCAAGCATCCTCCTGTATCGTGAATGGAGCCCGAAGCTAAATAGCTGAAAGACGATAAATCGGAAAAAGAGAGCCACAAGCCAGTTTGATCCAGTCTGTATAACGGGGACCGCACCGGCTGTGTGAGGAGGAGTGGCGGCGGCGGCGGTGGcggcggcggcagcagcagggacATGTTCTGAGCGGAGAGCCGGCGAGCGGCGGCGGCTGGCGGGATGAAGGCGCCGAGGAGACCGAGGCAGACGCGGCTCCTCCCCCGGTTCTGCGTCTGTGGAGTCGGTCTGCTCGCAGCCGCCTGGATCTTTAACTTCAACGATGTTACAGGTTCTAATGCACCCACTGTGGATCATGACATCTCCTTGTCAAAGAAAGAGCTCATGCAGcaagaaaaagacaacaatgaaaATGACAGTATTTCTAGATCCGCTATCAGTGATTTTCCTGAAGACCTCTTCACTCTGGAGCAGAAGAGACAGGGAGCGGTAGTCCTTCAtgttctctgtGCGATCTACATGTTTCATGCACTGGCCATCGTGTGTGATGTTTACTTTGTGCCATCACTGGAAAAAGTATCAGAGAACCTTCAGCTCAGTCAGGATGTTGCCGGGGCAACCTTCATGGCAGCTGGGAGCTCCGCCCCCGAGCTCTTCacctctctgattgGGGTGTTTATCACAAAAGGAGACGTGGGTGTGGGAACTATTGTGGGATCAGCTGTCTTTAACATCCTGGTCATCATCGGCCTCTGCGGCATCTTTTCTGGACAGACCATCTCTCTGAGCTGGTGGCCTTTGTTTCGTGATGCTGCCTTCTACATCCTGTCCATACTGGTGCTTATCCTGGTGATCTATGATGAAAAAGTATTGTGGTGGGAGACCATCATCCTGATCTCTATGTACGGAATCTACATAATCATCATGAAGTTTAACAGATCTCTGCGGAGCCTGGCAGAGAGACACTGCAGCAGGGCAGGTCAGCCATGTCTGAGCCGCCTGCGACGGACGACTGCTGTCGGAAACATTGGAGACTGTGACAACGACATGGTGCCGCTGAAGCCAGATTCTTGTGCGGTGGCCGGCCAGGACTCAGGGGTGGTGATGGTGGATGAGCTGCTGAACCTGCACCCCCACCAGCTCTCCTTCTCAGAGAGGCAGAGGCTGATTTGGGCCCGGGGTGGCCCAGAGGAAGGGGGAGCTTCGGGCGAGGAAGGTTCGGGTGCTAACGGATCGTGGGGGAGGGAGAACAGGACGGTGGCCGAGGGAGACAAGCAGCCactggagggagagagggagaggggtaAAGAGACCGGGGAAGAGACAGGTGGGGTAGCACATcctgaagaggaagaggaggaagagcaggaggaaggagaggaggagaacaCTCCTTTCAAACCCTTCGTCCTGCCACATGGTTGGTGTGTGCGTCTGAAGTGGCTGCTCTCTTGGCCCGTGAGCGTCCTACTCTACTTCACCATCCCCGACTGTAACCTGCCGCGGTGGGAGCGCTGGTACCTGCTCACCTTCCTGTCCTCCACACTCTGGATAGCCCTATTCTCCTACCTCATGGTCTGGATGGTGACCATAATCAGCTACACACTTGGAATCCCAGAAGTCATCATGGGCATTACTTTTCTGGCAGCCGGCACCAGTGTCCCTGACTGCATGGCCAGCCTCATCGTTGCTCGACaagGGATGGGCGACATGGCTGTTTCCAACTCCATTGGCAGTAATATCTTTGATGTGCTTCTGGGCCTGGGCTTCCCCTGGGCCCTGAGGACTCTCATTGTCAGCTACGGATCAGTGGTGACAATTAACAGCAGAGGCCTGGTGTACTCAGTGATTCTTCTGTTGGCCTCAGTCATACTCACTGTCCTGTGTGTCCATCTGAACTGCTGGAGGTTGGACCGCAGACTGGGACTCTGTCTCATACTTCTCTACGCCATCTTCCTCCTCTGCTCCATCGGCTTCGAGAGTTTGTAGAGGACATGCACACTCCCTGTACACGTGCACGCAGAGTCATGGCCCGACTTGTTTTCCACATTCAGTGCTGCCGTTATTCGTTAAATGTACAGACCGATGAATTTTCATTTCACTTTAAGGGTGGCTGTACATGTTTAAGCAGCGTTACTTCAACACCGGCTGCCTGAAAGCTacattgtttacctttgataAACGAGTATTTTACATAGTTTTGTACCGAGCACCTCCAGCCCAGATTTTGTGAAATCAGACCCAACTGATTATGCACTATGTTTCACAACAAATTTAGAAAGTATTGAATTTCTATTCTGAAACAAAGAATATTGTATAAGGAATCCTAAAGTCGGTTCATTTACTTATTAATACTTTATGACTGCCACGAGTAACGTCAATGACCAGATGATTACACATGTAAGTTTATATAGATTGCTTCTCATtgtgtaaagttattttatgtacatttttatGTCAAGTTTTCATCACGCCTTTGTATCTGTAGTTGCAAACAGCAAAGCATGGCTGATCATCACGCTGCAGTTAATTGCACTGAGCCACTGTTGTCTTGGCCTTGTACATAAcgtaacacccccccccccctctttatTCCAAACTTGTCAGCACAGAGGTGGTGATTTTGTGCTGGAATAAGGCGACTGTATGCTACAAGGTGTTTATGAATGTCTGTGTTTGGAGAGAGATGTTGAGTGTATGTTGTTAagttcaataaaatgttttgttctGTGAGGTT

Function

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 3 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814025.1 True 3102 mRNA 0.51 17 22794685 22805823
XM_039814027.1 False 3021 mRNA 0.51 17 22794685 22805823

Neighbor

gene id symbol gene type direction distance location
LOC120567166 NA coding upstream 477 22789614 ~ 22794208 (+)
zdhhc24 zdhhc24 coding upstream 5966 22784610 ~ 22788719 (+)
pola2 pola2 coding upstream 16521 22770570 ~ 22778164 (+)
zgc:195212 NA coding upstream 24384 22762485 ~ 22770301 (+)
si:dkey-34l15.1 LOC104919989,LOC104960541 coding upstream 32159 22754641 ~ 22762526 (+)
LOC120567435 NA coding downstream 9319 22815142 ~ 22823030 (+)
LOC120566951 LOC102310073,LOC103356241,LOC104942682 coding downstream 41295 22847118 ~ 22855701 (+)
ttc9c ttc9c coding downstream 52802 22858625 ~ 22862079 (+)
map1lc3cl LOC103356239,LOC101159112,LOC100701181,LOC102781115,LOC101482496 coding downstream 71974 22877797 ~ 22879471 (+)
LOC120566913 LOC107377419,LOC103374189,LOC100712009,LOC106536320 coding downstream 136639 22942462 ~ 22949531 (+)
LOC120567160 NA non-coding upstream 69032 22723025 ~ 22725653 (+)
G107073 NA non-coding upstream 163315 22631079 ~ 22631370 (+)
G107050 NA non-coding upstream 379350 22415002 ~ 22415335 (+)
LOC120566464 NA non-coding upstream 397634 22390353 ~ 22397051 (+)
G107025 LOC104954424,LOC103390732 non-coding upstream 416345 22331012 ~ 22378340 (+)
G107149 NA non-coding downstream 17778 22823601 ~ 22823862 (+)
G107161 NA non-coding downstream 50832 22856655 ~ 22856868 (+)
G107164 NA non-coding downstream 60145 22865968 ~ 22866201 (+)
LOC120566955 NA non-coding downstream 61256 22867079 ~ 22875098 (+)
G107170 LOC103356238,LOC104934092,LOC105928696,LOC104942686,LOC106516021 non-coding downstream 78254 22884077 ~ 22887891 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 1325858 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 1443707 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 1511456 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 1847270 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 2442518 20351721 ~ 20352167 (+)
G107163 LOC103356264 other downstream 56367 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 97932 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 144772 22950595 ~ 22997038 (+)
G107168 NA other downstream 149149 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 294202 23100025 ~ 23132685 (+)

Expression


Co-expression Network