phf6 (phf6,LOC102789831)


Basic Information

Item Value
gene id phf6
gene name phf6,LOC102789831
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2911615 ~ 2924773 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814047.1
CCCGGAAGTCCTGCTGTCTTGAGCAGGGTAGCTAGCTTGATGCTAGTGTGAATAGCTCACGATTACTTCTAAAGGACGGAAAGAAACATAGTCACTGCTCGGAACACTTTTCCATCTTTTCCACCGTCTCAGCGCGATAAGACTATATTAGCAGTTGGTCAAACAAAAAAGCCTTTGGTCATGTCGGGACAGAGGAAAGGAGCAGCAGCACGGCTGCTTAAATGTGCCTTCTGCAGAACCAACCGGGACAAGGAGTGCGGGCAGCTGCTAGTGTCTGACAGCCAGAAGGTGGCAGCCCACCATAAGTGCATGcttttctcctctgccCTGGTCACATCCCACTCAGACAGCGACAACATTGGAGGATTTTCCATTGAGGATGTGAAAAAGGAGATCAAGAGGGGAAATAAATTGATGTGTTCTTTATGTCACCGGCCGGGTGCTACCATCGGCTGTGATGTGAATACGTGCCGGAGGACATATCACTATTACTGCGCTCTGAAGGACAAAGCCCAGATCAAAGAGAATCCCTCACAAGGGATTTAcctTGTTTACTGTCGCAAACACCGGGATGCCTCTCAGGTTGGCATTCAAGATGAAGAGGGAGCTGTGGCCAATGATTCCGACTCATCGCCTCCACAAAGTAGGGGCAGAGGAAGGTTCGAGAAGGGAAGAGCCAAGGTCGGATCTCGTGGCCAATCAGAAGACACCCGCTCAACTTCCTCACAGGCTGCAGACGAGGAGAGTTCCTCCCACCGGGACAGGTCACCTCTTCGGGCCAGCCCGGCAGATGGCGGCCAGCGCTGTGGCTTCTGTCATGCTGGTGAGGAAGAGAATGAAACGAGGGGCATGCTTCATACTGATAACTCCAAAAAAGTGGCGGCACACTACAGGTGCATGCTTTTTTCATCAGGGACGGTGCAGCTGACCACTACGTCACGGGCTGAATTTGGAAACTTTGACGTAAAAACAGTCATCCAGGAAATCAAGAGAGGGAAAAGAATGaAATGCACTCTCTGCACTCAGTTGGGTGCTACCATTGGGTGTGAAATCAAGGCATGTGTGAAGACCTACCACTATCACTGCGGCCTGCAGGACAAAGCCAAGTACATTGAAAACATGGCGCGTGGCATCTACAAgctATACTGTAAGAATCACAGTGGCAACGAGGAGAGGGATGAAGAAGATGAGGAACGTGAGAATCGCAGTAGACAGAGGGCAGCAAACAACCTTGAAGGAGCCGCTGTAACGCAAGTGAATGGCAACTAAGTTGGCCTGAGGGACGTGACATGGGATGAAAACAGAAGAACTCTAAGACGAGGGAGAGATATTTTTCATAATAAATCTTAGCCTACTCACAAAGTGGTGGTCTACAAGCCCCcttcacatgtttttttttctctccagtaAATGGACATGATGTCCCAATGTGCACCAGATGTCTTCTTCATGTAAAAACCCCGTTTTGAGTTGACTGGATAAGCTTTTCACAGACTGGTGGTACTCTGCAGAGCACTGGACTGCTGCAGGATCATAAAAAGCCATGGCTAATCTTACCCAAGACTCCGTGATGGGCTCACATTTCAAATACATGTATTATTTCCGTGAATAAGAGCTGATGGACCGATCTTCTGATTGTCACTCACTGCCCATGTCCCCACAGATTACATGACACACACTTGCTGAAATGGATGCATTTTAGCTTTTCCTTTGCTTCTAAAGGACTCACTTTTAAGAGGGGTCTGTTTGTTACTAGTCTCTCTATCAAGTTGTGCAGTTTGATTACCCTGTTTCTGTACTCATGTCTTAAGAATACTCTTTTCATGTTAGCCTTTCTTTCTTGATATGTAATATTTTGCTACTGTATTATCATCATgggtaatttttttaaatatatggaCAGTCACAATTACAAGTTTTGCCAGCATGCACTTGGATTTTCCCACTGTTCAAGgtggcatttttttatttagctacTAAAGGGCAAAGTAGAGCTCTTTAGAGGTGTTGGCTTGACTTTGTTTGATTTACTGTTACTTGTATCTCTACAAATGTATCCATGAATGATTGGAAatagaaaatattttattttacacattta
>XM_039814048.1
CCCGGAAGTCCTGCTGTCTTGAGCAGGGTAGCTAGCTTGATGCTAGTGTGAATAGCTCACGATTACTTCTAAAGGACGGAAAGAAACATAGTCACTGCTCGGAACACTTTTCCATCTTTTCCACCGTCTCAGCGCGATAAGACTATATTAGCAGTTGGTCAAACAAAAAAGCCTTTGGTCATGTCGGGACAGAGGAAAGGAGCAGCAGCACGGCTGCTTAAATGTGCCTTCTGCAGAACCAACCGGGACAAGGAGTGCGGGCAGCTGCTAGTGTCTGACAGCCAGAAGGTGGCAGCCCACCATAAGTGCATGATGTGTTCTTTATGTCACCGGCCGGGTGCTACCATCGGCTGTGATGTGAATACGTGCCGGAGGACATATCACTATTACTGCGCTCTGAAGGACAAAGCCCAGATCAAAGAGAATCCCTCACAAGGGATTTAcctTGTTTACTGTCGCAAACACCGGGATGCCTCTCAGGTTGGCATTCAAGATGAAGAGGGAGCTGTGGCCAATGATTCCGACTCATCGCCTCCACAAAGTAGGGGCAGAGGAAGGTTCGAGAAGGGAAGAGCCAAGGTCGGATCTCGTGGCCAATCAGAAGACACCCGCTCAACTTCCTCACAGGCTGCAGACGAGGAGAGTTCCTCCCACCGGGACAGGTCACCTCTTCGGGCCAGCCCGGCAGATGGCGGCCAGCGCTGTGGCTTCTGTCATGCTGGTGAGGAAGAGAATGAAACGAGGGGCATGCTTCATACTGATAACTCCAAAAAAGTGGCGGCACACTACAGGTGCATGCTTTTTTCATCAGGGACGGTGCAGCTGACCACTACGTCACGGGCTGAATTTGGAAACTTTGACGTAAAAACAGTCATCCAGGAAATCAAGAGAGGGAAAAGAATGaAATGCACTCTCTGCACTCAGTTGGGTGCTACCATTGGGTGTGAAATCAAGGCATGTGTGAAGACCTACCACTATCACTGCGGCCTGCAGGACAAAGCCAAGTACATTGAAAACATGGCGCGTGGCATCTACAAgctATACTGTAAGAATCACAGTGGCAACGAGGAGAGGGATGAAGAAGATGAGGAACGTGAGAATCGCAGTAGACAGAGGGCAGCAAACAACCTTGAAGGAGCCGCTGTAACGCAAGTGAATGGCAACTAAGTTGGCCTGAGGGACGTGACATGGGATGAAAACAGAAGAACTCTAAGACGAGGGAGAGATATTTTTCATAATAAATCTTAGCCTACTCACAAAGTGGTGGTCTACAAGCCCCcttcacatgtttttttttctctccagtaAATGGACATGATGTCCCAATGTGCACCAGATGTCTTCTTCATGTAAAAACCCCGTTTTGAGTTGACTGGATAAGCTTTTCACAGACTGGTGGTACTCTGCAGAGCACTGGACTGCTGCAGGATCATAAAAAGCCATGGCTAATCTTACCCAAGACTCCGTGATGGGCTCACATTTCAAATACATGTATTATTTCCGTGAATAAGAGCTGATGGACCGATCTTCTGATTGTCACTCACTGCCCATGTCCCCACAGATTACATGACACACACTTGCTGAAATGGATGCATTTTAGCTTTTCCTTTGCTTCTAAAGGACTCACTTTTAAGAGGGGTCTGTTTGTTACTAGTCTCTCTATCAAGTTGTGCAGTTTGATTACCCTGTTTCTGTACTCATGTCTTAAGAATACTCTTTTCATGTTAGCCTTTCTTTCTTGATATGTAATATTTTGCTACTGTATTATCATCATgggtaatttttttaaatatatggaCAGTCACAATTACAAGTTTTGCCAGCATGCACTTGGATTTTCCCACTGTTCAAGgtggcatttttttatttagctacTAAAGGGCAAAGTAGAGCTCTTTAGAGGTGTTGGCTTGACTTTGTTTGATTTACTGTTACTTGTATCTCTACAAATGTATCCATGAATGATTGGAAatagaaaatattttattttacacattta

Function

symbol description
phf6 Predicted to enable histone binding activity and histone deacetylase binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Borjeson-Forssman-Lehmann syndrome. Orthologous to human PHF6 (PHD finger protein 6).

NR:

description
PHD finger protein 6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23310 PHF6; PHD finger protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814047.1 True 2101 mRNA 0.46 11 2911615 2924773
XM_039814048.1 False 1999 mRNA 0.46 10 2911615 2924773

Neighbor

gene id symbol gene type direction distance location
hprt1 hprt1,LOC102225914,LOC107082363 coding downstream 2575 2899351 ~ 2909040 (-)
ints6l LOC103357573,LOC100710804,LOC102788097,LOC101475885 coding downstream 27520 2865839 ~ 2884095 (-)
pfdn6 pfdn6 coding downstream 52569 2854830 ~ 2859046 (-)
her11 NA coding downstream 66916 2843087 ~ 2844699 (-)
micu3b micu3,LOC104941480,LOC104920617 coding downstream 95413 2796249 ~ 2816202 (-)
LOC120567109 NA coding upstream 230920 3155693 ~ 3157527 (-)
sting1 tmem173 coding upstream 239423 3164196 ~ 3178567 (-)
ppp3cb LOC100697276,LOC103357584,LOC102312674,LOC102792915,LOC103471056,LOC104920567 coding upstream 256789 3181562 ~ 3227009 (-)
zgc:92242 NA coding upstream 348689 3273462 ~ 3284779 (-)
purab pura,LOC101470750,LOC103149274,LOC104965787,LOC107380861,LOC103391294 coding upstream 434426 3359199 ~ 3365806 (-)
G102941 NA non-coding downstream 120791 2790526 ~ 2790824 (-)
G102923 mtus1 non-coding downstream 200176 2709027 ~ 2711439 (-)
G102916 NA non-coding downstream 217001 2694352 ~ 2694614 (-)
G102915 NA non-coding downstream 218060 2690831 ~ 2693555 (-)
G102914 NA non-coding downstream 221052 2688009 ~ 2690563 (-)
G103059 NA non-coding upstream 14373 2939146 ~ 2940797 (-)
G103067 NA non-coding upstream 35598 2960371 ~ 2961386 (-)
G103096 LOC106586057 non-coding upstream 196906 3121679 ~ 3125337 (-)
G103097 NA non-coding upstream 207378 3132151 ~ 3191381 (-)
G103085 NA non-coding upstream 242879 3167652 ~ 3246583 (-)
pabir2 LOC104944540,LOC105929195,LOC106528854 other downstream 13070 2890970 ~ 2898545 (-)
LOC120567496 NA other downstream 15302 2896171 ~ 2896313 (-)
slc7a2 slc7a2,LOC102301583 other downstream 171128 2725460 ~ 2740487 (-)
sh2d1aa sh2d1a,LOC102800107 other downstream 713697 2176867 ~ 2197918 (-)
insb LOC101469513,LOC102789752 other downstream 2069997 838946 ~ 841618 (-)
guf1 guf1,LOC102797887 other upstream 699386 3624159 ~ 3642640 (-)
G103268 NA other upstream 978218 3902991 ~ 3925309 (-)
smim19 smim19 other upstream 1004157 3928930 ~ 3933220 (-)
LOC120567378 NA other upstream 1395876 4320649 ~ 4400058 (-)
fmr1 fmr1,LOC102779310 other upstream 1501744 4426517 ~ 4457827 (-)

Expression


Co-expression Network