chic1 (LOC102788766,LOC101478093,LOC108231262,LOC104958396)


Basic Information

Item Value
gene id chic1
gene name LOC102788766,LOC101478093,LOC108231262,LOC104958396
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23686594 ~ 23692809 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814054.1
CCCGTAGGAGACGTCATGAGCGTCTTACTACCCAACATGGCGGACTTTGATACCATTTATGAGTTGGAAGACGAAGAGGATGAGCACGTAGTGAGTGAGGAACACTTGCCCAGATACTGTCCGGAGCCCGTGGTGATGCGAGGGGCCGGGCACATCACAGTATTTGGACTGAGCAACAGATTTGACACAGAATTTCCCTCTGTTCTCACGGGAAAGgtaGCACCAGAGGAATTCAAAACCAGCATCAGCAGGGTGAATGCTTGTTTGAAGAAGAACTTGCCTGTGAATGTGAAGTGGCTTCTTTGCGGCTGCCTGTGCTGTTGCTGTACAGTAGGCTGCAGTCTATGGCCTGTTATCTGCCTCAACAAGAGAACGAGACGGTCTATTCATAAGTTGTTAGAGTGGGAAAATAACCGATTATACCACAAGCTGGGTCTGCACTGGAAACtcagtaaaagaaaatgtgaaagcAGTAATATGATGGAATATGTAATTCTTATAGAATTCTTACCCAAATATCCTATATTCCGACCAGACTGAGGAGGCTGTTACTGTAAAAGACTGGATGCGTGGCCCTTGAATCTTATCCTTAGTGccttgtatatacagtatgtcggAATAAGGGTCTGCACCAATGTCTCTCGTGATGACCCTGTACATCTCCCTGTACCTTGTACTTTAGAATTTGCAACACTGTCACTTTGCTTTAGAGCAGATTTTGCACATATTTCTTCCTGACAGAACTAGACATGTCCCCTTTGTTGCACTCGGATGTGTTTTTTGTGACAAACAAGTGAAACCCTCAAAAAGTGCATTAACCCCAAAGAACCTTCAACCTGTATCCCATCTATTATATCAGTAATCCCTTGCAAAGAATGTGATGCCTCCACCTTCCTTAACTATCCTTGCCTTAtgtatgattttctttttataactaCATGTAAGAGAAGTGGGAAGGCACTGGGTAATTCAACAAGTCTGTAGATTCAAATGCTGTTTGTTGGGTTTCCTCTCTTCGAATCCAGTTCTTTGCAAGTAGATGGGATGGTTGAAATTGCCTAACGTACAGTGTACGCCATCACCCTGTGTTAACTCTTTACATTTGACCCTCTGTATATGGGAACTAGCTAGTAATAACTTGACCTGTAAATACCATGTTTTAGAATAAGCTGTACAGTGGTATACCATTGTTTACATAAAGTTACTTAGCTCTTTAGTTTTTTTGCCAATATATTGCTGTACCATAGTTTTAAATAATGAAAGATGTCTATGTACCTTTCTAGTTTATATGGACCTGTTTACCTTGTAAGCCATATAGTTACAATGTACATGATGCCAGAGTTAGGACTGATTATTGCACTTGAGCCCAGTAGAAAGTCAGGCTTTCAGACGGTGATGCATCCTGAAGATTCATCCACAGCAGTGCATGTTACCATGTGGTCTTTGCCAATAAAGATGACATTTAATGAGTTGTCATCCATTAAAACTGGAGATGGTTGCATCTCTAATGTGCAGTTGGAAGATTATGATTTAAACCCGTCTCTTCCACTCaactatttaaaaagaaaaaaaaaaaaaagaaaaacattttatcccaactttgcattatttttttttaatgatttgtaCTTTTCCCTGTGCTGTGTTTACTCCTTCTGATGTGTTAGGAAGCACATACGTCTACAGTACATGGCGTATCGAGCAGATGGTTCTTTTGTTTCAGTCATTCTGTCCAGTGTTAGTATTATTTTCCTGAATCTTAGTGAAGAGATTGCTGCATTGTGTTGTATTGGAGTGCCTCTGGAATAGTCGTCGAACACACAGAGAAGACAGGTTGAAATCTGTTCTCTTGTACAAAGGAGATTTTAAGTCCTCCTCCCTGTATTGTCCCTGTTACAATTCCTGTAAATGTTCGTCATGGTGAACCTAATCCCTacggagagagaaaataaattgttgattttgaatttca

Function

NR:

description
PREDICTED: cysteine-rich hydrophobic domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814054.1 True 1972 mRNA 0.40 6 23686594 23692809

Neighbor

gene id symbol gene type direction distance location
slc25a43 slc25a43,LOC102789340 coding downstream 34872 23646135 ~ 23651722 (-)
slc25a5 slc25a5,LOC106926499,LOC104931197,LOC103140121 coding downstream 41098 23643288 ~ 23645496 (-)
si:rp71-46j2.7 LOC103373861,LOC102778070 coding downstream 47248 23631502 ~ 23639346 (-)
LOC120566236 NA coding downstream 56438 23627091 ~ 23630156 (-)
mrpl11 mrpl11 coding downstream 60229 23588130 ~ 23626365 (-)
cdx4 cdx4 coding upstream 1461 23694270 ~ 23697490 (-)
kdrl LOC103373800 coding upstream 17212 23710021 ~ 23757151 (-)
dlg3 dlg3,LOC106611741,LOC102786504 coding upstream 77482 23770291 ~ 23856291 (-)
gdpd2 NA coding upstream 165213 23858022 ~ 23868756 (-)
stard14 NA coding upstream 186252 23879061 ~ 23883457 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 422695 23242037 ~ 23263899 (-)
G107282 NA non-coding downstream 462138 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 504877 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 712834 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 810135 22875496 ~ 22876459 (-)
G107610 NA non-coding upstream 99245 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 506690 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 595340 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 739192 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 755312 24448121 ~ 24450769 (-)
rnaseh2c rnaseh2c other downstream 499536 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 509568 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 551809 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 693365 22990987 ~ 22993229 (-)
G107117 NA other downstream 993763 22691160 ~ 22692831 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 191779 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 880632 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1169161 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1570363 25263172 ~ 25264864 (-)
G107989 NA other upstream 1586794 25279603 ~ 25288086 (-)

Expression


Co-expression Network