LOC120567195 (LOC108243068,LOC106924634)


Basic Information

Item Value
gene id LOC120567195
gene name LOC108243068,LOC106924634
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20526783 ~ 20529658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814111.1
GAATTGTAGAACCAGAGGAATTAAATACATGTCACTCCTATCACACACAGCAGTGCATCTAGACCGATTCTCACAAGTGCAGCTATGTCTTTAAAAGGACTGCTCAGTCCCCTTCCTATTGGATGCTAGCGATGGATGCTTTGCACCAACCACATACAGATTTGTACAAAGAGATCTACCCCCTCCCCCTTGCAGCCTCAGCACTGTAAACGTTAATGGAAAGAGCTGGAGGAAGGTGGGTGATGCGCTTAATCCCGGATCTGAAAAATATATGTTAATTATTTAAGCTTTAGACATGAACAAAAAtgcttcatttatttttatggcAATAACTTATGCACGTTGGAACTGGATATTTACTTCGATTTTCTCAATGGGAAATAACGTTTTCTAACGAATCGGGGATGACAAAGAGAATGGGAGACCGAGACTGGAGATGGCAGGCTCTATGGTGGCATTACTTCTTTCTCTTGTGGAGTACAATAAACGGACAGACTCGTTACAGCATGCCGGAGGAACTGAAACAGGGCGCTGTGGTAGGAAATCTAGCCAAAGATCTGGGTTTGGGGCTATCTGAGATTTTTGACCGTAAGCTGCGTGTCTCCTCTGAGGCTGGTGAGCAGTATTTCAGTGTGGATGCGGGGAAGGGCGAGCTGGTGGTGAATGACAGAATAGACAGAGAGGCTTTATGCGGACAAAGCGCCAGCTGTGTGTTGCCTCTGCAGGTTGTTCTAGAAAACCCTTTAAGTTTACATCGGATTGAGGTAGAAATAAAAGATGTAAATGATAACTCGCCTAGTTTCCATACAAAAGAACTGTCTTTAAAAATTTCTGAATCGGCAGCTGTGGGAACTCGTTTCTCATTGGAGAGTGCAGAAGATTCTGACGTTGGCAGTAATTCAGTTAAATCCTACATATTGACTAAAAACGActgttttacattaaaaatgaaGGAAGTTGAGGACGGCAAAACAGTCCCGGAGTTAGTGTTAGAGAAGCCCCTTGATCGAGAGAAGAAAGCAGTTCATCAGCTACTACTGACTGCATTAGACGGGGGAAACCCGGTTATGTCTGGTACCTCACAGATAACAATCACAGTGCTTGACGTAAATGACAATTTTCCAGTTTTcgataaaaatgtatataaagtTTCGTTAGGGGAAAATACTGCAAAAGATACTTTTTTTATCAAAATTACAGCAACTGATGCTGATGAGGGCCCAAACGCAGAAGTTGAATTCTCGTTTGGCTCGCGGACACCGGATTTCGTCTTATCAGTATttgaaataaatgcattaacAGGGGAAATACATTTGAAAGGAGACTTAGATTATGAAAGAGTCACGTCTTACAAAATTGAAATAACTGCGAAAGACAAGGGGGTTCCTGAAATGGAGAGTCACTGTCGTCTACAGATAGATGTTGTCGATGTTAATGATAACACTCCAGAAATTGTTCTCACCTCTGAACCGCAGCCCGTGCGCGAAGACGCACCAAGTGGCACAGTGGTGGCTTTGCTTAACGCACGTGACGCTGACTCCGGGAATAATAGCAAAGTGACATTGCGACTATCCAAAGGTTCTCCTTTCACGTTAAAACCATCATATTCTAATAATTATGCACTGGTTACAAATGGGGCTTTAGACCGAGAGAGTTTCTCGGACTATAATATTGAGATAACAGCCACTGATTCAggctctcctcctctgtctagTAAGAAGATTATACCTGTCAGCATCACTGATGTGAACGACAACCCTCCTATTTTTACTCAGCCCTCATATAATGTGTATTTAAAAGAGAATGGGGTACCAGGCTCTATACTGTACTCAGTATCAGCATCTGACCTGGATTTTGGTGAAAACGCCAAAATCTCCTACTCTATACTAGACTCTAAAGTGCAGGACGTTTCTGTCTCATCTTATGTTTACATTAACTCAGATAACGGCAGCATCTACAGCATGCACTCGTTTGACTATGAGAAGCTGAAGGTGTTTCAGATTCAGGTTCAGGCAAAGGATCAGGGCTCTCCGTCTCTCAGCAGCAACGTCACTGTCCATGTTTTTATCCTGGACCAGAACGACAATGCCCCCGCTGTTATTTACCCCTCCTCCGCTGCCCTgggctctctctctcatcagagGATGCCCCGCTCCGCTAAAGCAGGCCACCTGGTTACTAAGGTGACGGCCGTGGACGCTGACTCGGGCCATAACGCCTGGATCTCCTACAAACTGGCGGAGGCCACAGACGCCTCTCTGTTCACTGTCAATCTGTACACAGGGGAGGTGAGGACTAAACGCACTGTGTCCGAGCAGGACGACTCCTCTCAGAGGCTGCTTATAGAGATTCAGGACGACGGGGAACCGGTCCAGTCCGCCACCGTCACGGTGTCCATCCTGCTGGAGGACGGCCTCCATGAGCCCATCTTAGACCTCCGACAGAAAGTGGCCGAGCCCAGCAAGAAAACTGGGAGAATCACCCTTTATTTGATTCTCTCTCTGGCCTCGGTGTCCGTGCTGTCTCTGGTGACTTTTCTCATCTTAGCGGTTAAATGCATGAGGAACAGCAGAAGCAGCGGTAGTTGCTGCATGAGACGGAGCGACTGTGATGATTACAAGAACCCCAACAGAAACCTGCAGATTCAGCTCAACACTGATGGACCTATAAAGTACGTGGAGGTCCTGGGAGGAGACATGTTGTCTCAGAGTCAGTCCTTCAGGTCCTGTATGTCTCCGATGTCAGAGTACAGTGATTTCACTTTGATTAAGCCCAGCAGCACCAATGACTTTAAGGAGGTGATCAGTGTTCTGGATGCGTCTTTACCCGACAGCACCTGGACCTTTGAGAGCCAGCAGGTGAGCAGAAAACAATAG

Function

NR:

description
PREDICTED: protocadherin gamma-C5-like

GO: NA

KEGG:

id description
K16497 PCDHGC; protocadherin gamma subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814111.1 True 2876 mRNA 0.46 1 20526783 20529658

Neighbor

gene id symbol gene type direction distance location
LOC120567199 pcdhgc5 coding upstream 7410 20516645 ~ 20519373 (+)
LOC120567215 LOC101080210 coding upstream 17296 20497855 ~ 20509487 (+)
LOC120567197 LOC101078623,LOC101080210,LOC107376386 coding upstream 38189 20486030 ~ 20488594 (+)
LOC120567225 LOC101080210,LOC105417361 coding upstream 41441 20482551 ~ 20485342 (+)
LOC120567220 LOC104943736,LOC105940804,LOC107396883,LOC106950266 coding upstream 47503 20476432 ~ 20479280 (+)
LOC120567465 fam196b,LOC106941975 coding downstream 312939 20842597 ~ 20865014 (+)
LOC120567467 tlx3,LOC102778180,LOC103390932,LOC104948897 coding downstream 429092 20958750 ~ 20962480 (+)
LOC120567251 NA coding downstream 530347 21060005 ~ 21067720 (+)
si:dkeyp-121d2.7 LOC103354771 coding downstream 602557 21132215 ~ 21136447 (+)
LOC120566628 LOC104961166,LOC103390920,LOC102076832,LOC103354772 coding downstream 617023 21146681 ~ 21154828 (+)
LOC120567249 NA non-coding upstream 250872 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 527982 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 571820 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 585068 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 678505 19844839 ~ 19848278 (+)
G106577 NA non-coding downstream 180851 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 570826 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 577840 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 663408 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 666521 21196179 ~ 21196654 (+)
G106465 LOC104955902 other upstream 174616 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 465445 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 874309 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1556837 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2627052 17890170 ~ 17899731 (+)
hrh2a LOC103354784,LOC104948895 other downstream 405071 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 750029 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 759873 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 919142 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 2332532 22862190 ~ 22865676 (+)

Expression


Co-expression Network