LOC120567209 (LOC104943259,LOC103373949,LOC102209292,LOC102779498)


Basic Information

Item Value
gene id LOC120567209
gene name LOC104943259,LOC103373949,LOC102209292,LOC102779498
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20385678 ~ 20389057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814123.1
AAattgggacagagagagagcaatcCAAGCAGACAGCTTCCCTAATAGAGCATGATTAACTCAGCTAGAGAAGCAGGGGACCGCTGGACTGCAGCAGCATTTTTAGTTCGATATTTGATGTATATGTTTAGGATTTAGCTATCATGGCGACAGTGCATCTGTTTTTGAAAGCATGTTTAATCATGGACCAGCGAATACACTTAAAATGGTGGCtgcattttttattgttttgcctCCTTTTTGGTGTTTCGTTTGGAGAAGTCCGTTACATCCTTCCAGAGGAGATGCAGCGGGGCTCGGTTATCGGGAATGTAGCGCGGGATCTGGGGCTGAAAGTGACGGAGCTTGATGCTCGTAGAACCCGTGTTGTAGCCGAAGGAACTAGCCAGCTGTGTGAACTGGACACTGCATCAGGCAATCTTTTGATCAGCCAACGGATAGATCGAGAGGAGCTCTGCGCGCAAGCCAGTGTCTGCATCCTACAGTACCAGCTTTTACTTGAAGATCCTCTTCAAGTATACAGCTTAGTTTTGGATATTGCAGATATAAATGACAACAGCCCAGTTTTCGCTGCAGGGGAGATACAACTAGATGTAGTCGAATCCACAGTTCTGGGGAGGCGCTTTCCGTTGGAGAGTGCGCATGACCCCGATCTGGGAACCAACTCAGTCCGTGAATATAAACTGACCCCGAACGATCATTTTGCACTGGAAATGAGTACCCAAATAAATAGCAATGCTTATCCGGAACTAGTTCTTAAAAAGTCCTTGGACCGGGAGGCACAAGCTGAACATATACTGAAAATCAATGGAATCGACGGGGGAAATCCGGTCAGATCAGGAACTGCTTCTATCCATATCCGTGTTTTGGACGCCAATGACAATGTCCCAGTTTTTAGCCAACGAGTTTACAAAGCCTCTGTGCCAGAGAACTCTGCCATAGGGACTGGCATAGCCAAGCTGAATGCCACGGACTCAGATGAAGGTGTTTATGGAGAGATAACCTACTCATTCAGTCACCTGTCAGACAAGATGGGAGGAATTTTTGAAATCAACCCTTTGAGTGGAGAAGTTCGGGTGGCAGGTGCTATTGACTATGAAGATGCTAGTATGCACGAGCTGGATGTTCAGGCTAAAGATGGGGGTGGTCAGGCGTCTCACTGTAAACTTATAATTGACGTCATTGACGTAAATGACAATAAACCCATGATGGAAATAAAGTCAGCCTCTGCTAACGTGGCTGAAGACTCTAAACCAGGAACTATGGTTGCTCTGATTAATATGTATGACCTGGACACTGGAAACAGTGGGCGCGTCACGTGTACAATCCCAGACAATGTTCCttttaaatttgtatcagaGGTAAAAAACTATTACATGTTAGTGACTGACGGAATACTAGACAGAGAACTTGAACCCGAGTATAACATCACAATCACTGCCACTGATGCGGGCTCCCCCTCGCTTTCTAGTGTAAAAGTTATAACAATCGTGGTCAATGATATAAATGATAATCCACCGAGTTTTACGCAGAGCGAGTACAATGCCAACATCTTAGAAAACCAACCCGTTGGCTCGTTTGTGATGAAAGTAAAAGCAGAAGACGTTGACGACGGAACTAATGCTAAAATACTATACCAAATATCAAAGGACACACAGTCAGAAGTGTCCTCCTTCCTCACCATCAACTCAGACACAGGGGAGCTCTTCACATCACGCCTATTTGATTACGAACAGTCCGTTTACTTTCAAATTAAGGTGACAGCTCGAGATGGAGGCGACCCTCCACTCTCCACCACCTGCACTGTAAACGCCTTTATTAAGGACCAAAATGATAATGCACCTGTTGTCTTATATCCTGTCCAAACCACGGGGTTTATTGCTGAGGATATGGTGCCAGTTGAAGCGCCTAGAGGTTACCTGGTTACTAAGGTGGTAGCTGTGGACGCCGACTCTGGCCATAACGCCTGGCTGTCCTACAGAATAATCAAAGCGACGCGGCCTAACCTGTTTATGGTCGGTCTGCATACAGGAGAAATCAGAACGGTGCGTACGTTCATGGAGGACGACGAAccgaaacaaactgttgttgttttagtAACAGATAACGGGCCCGAATCTCTCTCCGCCACCGCTACAGTCAGCGTAGTCATTGGTGACGGGTTGCCTGTTTTAAACGAACTCTTTGAGTTTGCAGatgagtcacaggacagtgatAACTTAACGCTCTATTTGATTATCGCTCTGATAGCGGTTTCCTCTCTTTTCATCCTTTTAATCAGTGGAGTGTTTTATGTTAAGCTCTGCAGGCGTAGTTATGTTTACCGTTCAACGACTGCTCTCCCCGTTTTCCCCACGACTTACTGTCCCACTAGTTTTGCAGACGTAAGCCGTAGTGGGACCCTGCTGAAAGATGACCGGTATGATTCATTCTTGACCACAGGGTCGTGGAGAGGCGATTTTCGTTTCGGTTCAAGTACAGACACTGACACACTGAAGCAAAGAAGTGCAGCCTATCAAAAAAATACGCTAAGGCGCACGAGTACAGACAGAGCTGGTCTGAAGGTGAGGGCAGGGGCACCGCATCCTTGTTATGTGGTCAAATGAGAGTCGTCCATaacatattgtgtatatattgtaAATATGATCCCTATGAGGTGAATTAAATGTTGACCCTTTGACTGCCAAATATTATGTTTACAATGTTAGCATTGTATTTGTGATTGAATATGTTGTCAATGCCGTGTTTAATGTGTTTTGTAATTTACTTGGAGTTTTGCTAACAACCTTAACCTCATCCCACCACGACCTTAGACGGTAATCGTAACTCAATATTTTCGAAAATAGTATCATattagcataaaaaaaaaaatatttctattTACTCAGTTTTGTTTGCCTTTTTCGAAGTCACAGATAGGAAAAGGTTACACCAGACAGTTTGTTATAACTTAGTAAGGCTTGTTTTGTTTGCCTGCCTCTTTTAATTCTTATTCTGTAACTACTTACTAGTATTATATATGCATGGTTGAGCTTTCTGACTACTTTATTTCCTTCCTTGATAATAACAATACAGTTCAGGAACTGTAGTactatttgttaatattttgcTTTGTCCATGATATAGGTATCTTTTTCTCTGTTaatgtttttgtggaaaaaaccTTTGCCTTTGCACTTTTattgttttccattttttgACTTGGAATACACTGCAGCCACGTTTTGATAAGGCCAtgttatttttcacaaaataccATTATTTGTTGTGTGAAAGAGATATATTACAAGCTTTGCACTACATGCTATAAATTGAACAATATGTAAATACACTATGAGTGTATACggataaaaaataaactggGAGATAATATTGTGTTA

Function

NR:

description
PREDICTED: protocadherin beta-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814123.1 True 3380 mRNA 0.43 1 20385678 20389057

Neighbor

gene id symbol gene type direction distance location
LOC120567352 NA coding upstream 47391 20335723 ~ 20338287 (+)
LOC120567211 NA coding upstream 106379 20276737 ~ 20279299 (+)
LOC120567219 LOC104952413,LOC106456187,LOC105416208,LOC101076589,LOC106956704 coding upstream 182592 20200583 ~ 20203086 (+)
LOC120567347 LOC102308212,LOC107395890 coding upstream 195962 20186609 ~ 20189716 (+)
LOC120567346 NA coding upstream 199470 20183597 ~ 20186208 (+)
LOC120567196 LOC102208358,LOC101080210,LOC101061082,LOC105417360 coding downstream 6463 20395520 ~ 20398540 (+)
LOC120567207 LOC101080210,LOC106516811,LOC107396860 coding downstream 9653 20398710 ~ 20401503 (+)
LOC120567205 NA coding downstream 13346 20402403 ~ 20405468 (+)
LOC120567198 NA coding downstream 18505 20407562 ~ 20430473 (+)
LOC120567210 LOC101061082,LOC101078399,LOC106516846 coding downstream 21974 20411031 ~ 20413753 (+)
LOC120567249 NA non-coding upstream 109767 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 386877 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 430715 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 443963 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 537400 19844839 ~ 19848278 (+)
G106577 NA non-coding downstream 321452 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 711427 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 718441 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 804009 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 807122 21196179 ~ 21196654 (+)
G106465 LOC104955902 other upstream 33511 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 324340 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 733204 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1415732 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2485947 17890170 ~ 17899731 (+)
hrh2a LOC103354784,LOC104948895 other downstream 545672 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 890630 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 900474 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1059743 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 2473133 22862190 ~ 22865676 (+)

Expression


Co-expression Network