LOC120567224


Basic Information

Item Value
gene id LOC120567224
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20171575 ~ 20174355 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814138.1
TTAACGTTCTAATTTATTATTTGACCTTTTTATTTTCGCAATTCCTTCATGTTTAAGAAGTAAGAGTGTATAGTTTTTTCTACAAATGTCGTGTTTGATGTAGCTGTATTCATGATATATGTCCACACGGGGACACTGTAGACCATCACATTTGGAAGATCTCTTTGGTAGCTAAGGGCTCCTCCCAGATTCAGCGGATGATGTTTCTGTGGGCTTTGTTACAAAGAGAGGTCGGACGACAAAGAACGGTTGTCTTGATGGTCGCGGACATGCCGACATTTTTTATTGGAATATATCTTTCCTGATCTTGATCTCTTTGTTGTAACATATTGTCCAGATTTGCCTACATGTTCCTTCTCGATGTATGGAATAATGCATTTGCCGAGCAGAAGGAGCTCTGTGTGGATATGTCTCTTGGTCGTGCTGCTGGATTGTTACTGGGAAGCGGTGTCTGGGCAGCTCTCTTACTCCGTCTCAGAGGAGGTAAATCTGGGGACTGTTGTCGGAAATATCGCTAAAGATCTGAACATCAATGTCCAGGATTTGGAGTCCCGCATGTTTCAGATCGTTGCAGGATCAAAGAGAAAATATCTCGAGGTAAACCTAAAGACTGGTGTCCTGTACGTTAATGAGAGACTAGATCGAGAGGAACTCTGCGGCGATGAACCAAAATGTTCGCTCAGTGTAGAAGCAGTTATTAACAACCCTTTAAAACTGTACCGGATTGAAATAATCATTTTAGATGTGAATGATAATTCCCCGTCATTCCTCAGCACGTCGCAGATAATTAACATTAGTGAGAATACAGCAGTAGGGGCTAAATTCCCTCTGCATCCAGCTCACGATGCAGATGTCGGTAAAAATGCTGTAAATAGCTACAAGCTTAGCCAAAATGAACACTTCTCTCTCGCTACACATAAAGGAGAGAGTGTTACCGCCGAATTACTGCTTCAGAAAGTTTTAGACAGAGAAAAACAGTCTGTGATCCGACTCATACTGACTGCCATTGATGGAGGGACTCCTGCTAAATCTGGCAGTATGACTATAATAGTAAATGTATTGGACATTAATGATAACCCCCCTGTATTCAGCCAAACTCTATATAAAGCCCGTATGTATGAGAACGCTAAAATAGGAACATCGATAATAACATTAAATGCGACTGATTTGGATGCAGGCCCAAATGGACAGGTATTATATTCGTTCAGTGAAGTAGGCCGAGGTAAACAAACTGACCTGTTTGCTATTGATGAAAAAACTGGGActgtaacaaataaaaataatatagacTTTGAAGAGAATAATGCTTTTGAGATTAGAGTACAAGCCACTGATGGAGCTTCCTCACCGATGACATCACATGCCAAATTATTGATTGAAGTTTTAGACGTCAATGACAATGCCCCTGAAATTTCAGTTACTTCACTGTTGAACACCGTGAAGGAGGATGCGTCTGTTGGCACCGCCATTGCACTTGTTTCAGTATTTGATAAAGACGGAGGTAAAAATGGGATGATGAACTGTAAAATTTCCAATCATGTTCCTTTTAAATTGGAGTCCAATTATAAGAAGTACTACTCGTTGGTGGTGGACGGTCCTCTTGACAGAGAGAGCGCATCTCAGTACAATATCACCATCACTGCGACTGATGAGGGCAGCCCACCTCTCTCCAGCACGAGCGTTATTAATGTGCACGTCTCAGATGTGAATGATAATACACCTATGTTCACAGAAAACGTAATCAATGTCTATGTGAAAGAAAACAGTCCAGTAGGAGCAGTTTTAAAAAAGGTTTCAGCAATTGATGCAGACATCGATCAAAACGGTCAGGTGAGCTATTCATTTTTACAAAGTAACAGTAACTCATTGCCACTCTCGACTATGGTAAACATCAACTCAGAGACTGGAGATATAGTCAGCCTGCAGTCGTTTAACTACGAGGAGTTAAAAACGTTTCAGTTTAAAGTTCAGGCCACAGACTCTGGTGTTCCTCCGCTCAGCAGCAACGTGACTGTGAACGTTTTAATTCTGgatgaaaatgacaataatccaACAATTCTCGCGCCCTATTCTGAGCACGGCTCCGTTAACAGTGAGAGCATCCCCTATTCTGCTGAAGCGGGATACTTTGTGGCAAAGATCAGGGCTGTAGACGCAGACTCTGGATACAATGCGCTGCTTTCTTATCACCTGTCTGAGCCCAAAGGAAACAACCTCTTCCGGATCGGAACCAGCACCGGAGAAATCAGGACTAAGAGGAGAATGAGTGACAATGACCTGAAAACTCACCCCTTGGTGGTGTTGGTTTCTGATAACGGAGAACCCTCCCTGTCAGCTACTGTGTCTATTGATGTGGTGGTGGTtgaaagcacagctgacatcCAGACTCAGTTCAGACACGTGCCCATAAAGGAGGAGAGCTTCTCTGATTTAAACCTGTATCTGCTGATCGCCATCGTGTCGGTGTCAGTGATCTTTCTGCTGAGTCTCATCAGTTTAATAGCTGTCAGATGCCACAGGACAGACGGCAGTTTCAGCAGGTACAGCGCCCCAATGATCACCACCCACCCTGACGGGAGCTGGTCTTACTCTAAATCTACTCAGCAGTATGACGTGTGTTTCAGCTCAGACACGCTGAAGAGTGACGTAGTGGTTTTCCCCGCACCGTTTCCGCCTGTAGATGCTGAGCTGATCAGTATTAACGGAGGAGACACTTTTACCAGAACTCAGACTTTACCCAGCACAGACAAGGTAAGAAAACCTTGAAAATGGTACATGTAT

Function

GO: NA

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814138.1 True 2781 mRNA 0.43 1 20171575 20174355

Neighbor

gene id symbol gene type direction distance location
LOC120567231 LOC107395886,LOC103366346 coding upstream 518 20168264 ~ 20171057 (+)
LOC120567228 LOC104958880 coding upstream 3910 20164848 ~ 20167665 (+)
LOC120567223 NA coding upstream 7208 20161580 ~ 20164367 (+)
LOC120567230 LOC103375287 coding upstream 25972 20089540 ~ 20145603 (+)
LOC120567236 LOC108242382,LOC102303179,LOC106516872,LOC101076589,LOC101068049,LOC107374054 coding upstream 25972 20114922 ~ 20145603 (+)
LOC120566714 LOC105417358 coding downstream 759 20175114 ~ 20177899 (+)
LOC120567346 NA coding downstream 9242 20183597 ~ 20186208 (+)
LOC120567347 LOC102308212,LOC107395890 coding downstream 12254 20186609 ~ 20189716 (+)
LOC120567219 LOC104952413,LOC106456187,LOC105416208,LOC101076589,LOC106956704 coding downstream 26228 20200583 ~ 20203086 (+)
LOC120567211 NA coding downstream 102382 20276737 ~ 20279299 (+)
LOC120567444 NA non-coding upstream 172774 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 216612 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 229860 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 323297 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 569482 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 99478 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 536154 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 926129 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 933143 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1018711 21193066 ~ 21194849 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 110237 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 519101 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1201629 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2271844 17890170 ~ 17899731 (+)
G105677 NA other upstream 2485876 17682919 ~ 17685699 (+)
G106465 LOC104955902 other downstream 177366 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 760374 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1105332 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1115176 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1274445 21448800 ~ 21468827 (+)

Expression


Co-expression Network