LOC120567228 (LOC104958880)


Basic Information

Item Value
gene id LOC120567228
gene name LOC104958880
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20164848 ~ 20167665 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814141.1
ACTTGAAAGTTCAGAAGAATGTTGGTGATTTATCTGTTTTTAGTGGTAAATGTAGTTATTTCAAACGACCACACGAGGACATTGTAGACCATCACATTTTGATGTTCATCTTGGTTGCTTCAGGCTCCTCCCAGATTCAGAGCATGCTGATGTTTCTCGGGGCTTTGTTACAAAGGGCGCAGTGGAAGAATGGATTGCGTGGCCATCATTTACTCCCTAAAAGAGACGAAACTGGATTCTGGCACTTTGCTTTAATCCTGAATTTTTGAGACTAGAATCCATATTCGCTGTTCACGTTGGATACAAATATGTCGACGCGGACTTTACGGAGCACTTTGGGGATTTTTATAGTCGTTATTTTGGATTGTTGCTGGGAAGCGGTATTTGGACAGCTCTCTTACTCTGTATTAGAGGAGGTAAACCAGGGGACATCTGTGGGAAATCTTGCTAAAGATCTAAACCTTAATGTTCACGACTTGGAAGCACGTATGTTTCAGACTGTAAGCGGATCAAATAGAAAATATTTCGACGTAAATCTGAAAACTGGTGTTCTATATGTCAATGAAAGAATCGACCGCGAGGAGCTGTGTGCGAAGGCTACAAAATGTACTGTCGATGTAGAGGCCGTAATCAACAATCCACTAAAGCTTTACCGTTTGGAGGTAAATATAGTCGATATAAACGATAATGCACCATATTTCCCTGAGAATTTGCAGTCTCTTAACATTGCTGAAAGTACTGTGCAAGGAGGGAAATTTGGATTTATAGGGGCATCGGATCTCGATGTTGGTAAGAATAGTGTTAGTACATACAAGATAAGTCCAAATGATTATTTTTCTTTAGAGATTCACAAAGGCGGAGAGGCTGTGTCTGCCGAGCTTGTGCTTCAGAAAGCTTTAGACCGAGAAAAGCAACGCACTGTAAGACTCACAGTGACAGCAGTCGACGGAGGAAATCCACCTAAATCAGGAACGTCTCAGATCATTATCAATGTTTTAGACATCAACGACAACGCTCCGGTTTTCAGCAGTTCTTTATACAAGGCACGGATTTCTGAGAATTTAGCAGTAGGCAAAACTGTTATAATTCTGAATGCAACAGACGCAGATGAGGGATTAAATGCTGAAATAGAATATTCATTGAGAAGTAGAGGCCAGGATCATGTTATAGAGGTATTTGACATTGATTCTAAAACGGGTGCAATTTTAATCAAAGGTAAGATCGACTATGAAGAACATCCTGCGTTTGAGATTCATGCACAGGCTAGTGACAAAGGCCAGCCTCCGATGTCGGCTCATTGTAAGGTGCTGGTAGAAGTGGTGGACCTAAATGACAACGCTCCTGAGATCACTGTGACGTCACTATTAAACACAGTGAAGGAGGACACAGAAGTTGGTACTGCTATAGCACTTGTCTCTGTACTGGACAAAGATGGTGGAAAAAACGGTGTAGTAAAAGCGGTCATTCTGAATGAGAGCCCCTTCAAATTGGACACAAATTATAAAAACTATTATTCGTTAGTAGTTGATGGTCCACTTGACAGAGAAAAGATGGCCGCGTACAATGTCGTCATCGTCGCAACTGATGAAGGGACTCCACCTCTCTCCAGCACCAACATAGTGACAGTTCATGTTTCTGACGTTAATGATAACCCGCCTCGCTTCTCAGAGCCACTGATTAATGTTTATGTGAAAGAGAACAGTCCAGTAGGAGCAGTTATTAAAACGGTGACTGCAGTTGATGTCGATATCAGTCAAAACGGTCAGGTTAGCTattcttttttacaaagtaaCAGTAACTCAGTACCGCTGTCTACAATAGTAAACATCAACTCAGATACTGGAGATATAGTCAGCCTGCAGTCTTTTAACTACGAGGAGTTAAAAACGTTTCAGTTTAAAGTTCAGGCCACAGACTCTGGTGTTCCTCCGCTCAGCAGCAACGTGACTGTGAACGTTTTAATCCTGgatgaaaatgacaataatccaACAATTCTGGCGCCCTATTCTGAGCACGGCTCCGTTAACAGTGAGAGCATCCCCTATTCTGCTGAAGCGGGATACTTTGTGGCAAAGATCAGGGCTGTAGACGCAGACTCTGGATACAATGCGCTGCTTTCTTATCACCTGTCTGAGCCCAAAGGAAACAACCTCTTCCGGATCGGAACCAGCACCGGAGAAATCAGGACTAAGAGGAGAATGAGTGACAATGACCTGAAAACTCACCCCTTGGTGGTGTTGGTTTCTGATAACGGAGAACCCTCCCTGTCAGCTACTGTGTCTATTGATGTGGTGGTGGTtgaaagcacagctgacatcCAGACTCAGTTCAGACACGTGCCCATAAAGGAGGAGAGCTTCTCTGATTTAAACCTGTATCTGCTGATCGCCATCGTGTCGGTGTCAGTGATCTTTCTGCTGAGTCTCATCAGTTTAATAGCTGTCAGATGCCACAGGACAGACGGCAGTTTCAGCAGGTACAGCGCCCCAATGATCACCACCCACCCTGACGGGAGCTGGTCTTACTCTAAGTCTACTCAGCAGTATGACGTGTGTTTCAGCTCAGACACGCTGAAGAGTGACGTGGTGGTTTTCCCCGCACAGTTTCCGCCTGTAGATGCTGAGCTGATCAGTATTAACGGAGGAGACACTTTTACCAGAACTCAGACTTTACCCAGCACAGACAAGGTAAGAGTACCACGCTTATAATGCCACAAATTAAGACAACATAGTGAGTTTAAAAAAACGCTGGTCTTGTTTGCTATTCATGTATTTAGAAGGCTAGttcgttgttttttttcccttccttcTGTATTTGT

Function

NR:

description
PREDICTED: protocadherin alpha-3-like, partial

GO: NA

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814141.1 True 2818 mRNA 0.43 1 20164848 20167665

Neighbor

gene id symbol gene type direction distance location
LOC120567223 NA coding upstream 481 20161580 ~ 20164367 (+)
LOC120567230 LOC103375287 coding upstream 19245 20089540 ~ 20145603 (+)
LOC120567236 LOC108242382,LOC102303179,LOC106516872,LOC101076589,LOC101068049,LOC107374054 coding upstream 19245 20114922 ~ 20145603 (+)
LOC120567239 LOC103375145 coding upstream 56386 20105923 ~ 20108462 (+)
LOC120567243 NA coding upstream 62751 20099593 ~ 20102097 (+)
LOC120567231 LOC107395886,LOC103366346 coding downstream 599 20168264 ~ 20171057 (+)
LOC120567224 NA coding downstream 3910 20171575 ~ 20174355 (+)
LOC120566714 LOC105417358 coding downstream 7449 20175114 ~ 20177899 (+)
LOC120567346 NA coding downstream 15932 20183597 ~ 20186208 (+)
LOC120567347 LOC102308212,LOC107395890 coding downstream 18944 20186609 ~ 20189716 (+)
LOC120567444 NA non-coding upstream 166047 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 209885 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 223133 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 316570 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 562755 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 106168 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 542844 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 932819 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 939833 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1025401 21193066 ~ 21194849 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 103510 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 512374 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1194902 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2265117 17890170 ~ 17899731 (+)
G105677 NA other upstream 2479149 17682919 ~ 17685699 (+)
G106465 LOC104955902 other downstream 184056 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 767064 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1112022 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1121866 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1281135 21448800 ~ 21468827 (+)

Expression


Co-expression Network