LOC120567230 (LOC103375287)


Basic Information

Item Value
gene id LOC120567230
gene name LOC103375287
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20089540 ~ 20145603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814142.1
GAAACCAAAGGAAATATCGTCCCTCCCCTCATAAAGCTTTTGTTTGCTTtctgaaaaaagcagaaaaggcATTTGAATGGAGCTCGCCACCAGACGGAATAGTTTTGTGCTTTTTGTAAATATGAACTCAAAGCCGGTTTGATATAGACATTTATTGCAGTGACGTTTTTGTGTATTAATGTGTTGTTGGATAACAATGGTGATTGAAAGGCCAACTCGAAGAAGGGTCTGCTCATGGTTTGCTTTTCATTTGGCTCTACTGTTGTTCGTCGGAATACGGGGTTTGGCAGAAATAAGATACTCTATTCCAGAGGAAGTAAAAGATGGAACTGCTGTTGGAAATGTTGCGAAGGATCTTGGCCTTGATATCACCTCTTTGATTGACCGACGATTCCGCGTTGTTTCTGAATCTAAGGATGCATTTTTTGAGGTAAACCAGAACAATGGGGCTCTGTACGTCCATAAGAAAATCGACAGAgaggagctctgtcagggcagcggtgccTGCGTAATGGAGCTAAAAGTGATAGTCGAAAACCCGTTGGAAATACACTATGTAATTGTAGAAATTACTGATGTAAATGATCACTCTCCTAGTTTTCCAGAGAAAGAAcaaatatttgaaatatttgAACAAACACTACCAGGAAGGCGATTTCAACTGCACACTGCTCGTGACCCCGATGCTGGAATTAACTCTATTCGTACGTACACTTTGACGTCTAATGAACATTTTGAAGTAGATATCCGTCAAAGCGATGAGGATAAAATACCGTTTTTAGTGCTGAAGAAATCGTTAGACAGAGAACAaaaggacaaacacacactactgGTTACAGCAGTTGATGGAGGCAAACCTCCAAGATCAGGGACACTAAATGTTTCCATTATTGTTCTTGACAGTAATGATAACCGTCCGATATTTAGTCAGGAGATTTATCAAAttgcaataaaagaaaatgttccaGTCGGTACTTCAATATTTCAAATTAATGCGACAGATCCCGATGAAGGCACCAATAGCGAAATTGAATACAGCCTCGGAAAAACTCTTAAGAAAAAAGTCTATGACATTTTTGAATTGGACAAATTAACCGGAGAGATTAGAGTTAAAGGAGCAGTGGACTATGAAGAAAACGACGTTTATAAACTGGATGTTGAGGCATCCGATAAAGGAACACCTCCACTGACCGGTGAGTGTAGAGTCATTATAAAGATAAAAGACGTTAATGATAATCCACCGGAAATAGAAGTGACATCACTGTCAAATACAGTGTCTGAAGACTCAAAACCTGGCACAATGATTTCTCTTATCAGTTTCAAGGATAAAGACTCTGGTGTCAATGGAAAAATAATATCGAGCATAACGTCAGACGTGCCATTTGAATTAAAGCCCTCCTATAAGGAGAACATTTATTCAGTTGTCACGAAGGGATTTTTGGATCGAGAGGAGGTGTCACATTatgaaataacaataaaagcCACCGATTGTGGTGAACCTCCCTTATCTACTGTTAAAACTCTCAACATCCAGATATCAGATGTAAATGACAACAGTCCACATTTCGACCAAAATCCAATACAGTTTTATCTGGTAGAAAATAATGTTGCTGGAAATTCAATATTTTCTGTAAGCGCAACAGACAATGATTTGAATGACAATGCAGTTATTTCATACCATATAGTGAGAGGAGGGAATCAAAATGACATAATGTCTTTTCTCAACATAAACTCTGAAACTGGAGACATTTTGGCACTAAAAAGTTTTGATTTTGAAACACTGAAGACTTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTATATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCTGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACAAAGGATGAGGAGGACAATAATGTGACTTTTTACCTGATGATAACTTTGGGCTCCGtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCAAACACACTAGTGCTCCCTGACAGGAGAGGGACATCTGGAGAGAGGTCAGAACAGATGTAGGTCTGCACTGCACTTGGCATCTGTATGAGCTACAGCCACAACATCTGCTGCTGTGCTTAGGTCATCACTGCATGCCTGGAGGATTGAACTGACTGAGCGGGCAGCGCAAGGCTACATGCAAGACAGACAGCTATTAAGTGGAAAACAAGTGAAGACACAGTTGGTTGAAAATCCCCTTTAAGGTCACCCTGTTGCCTAAAAGCGCCCAGTGATCTAGATTTAATGGGATGGGGTTGTGATCTCTGATTGATAGAATGTGTGGGTGAGGAAAATCCAGAGTCAGCTGTTTAGACATTGGATGCAGTCATAGTAAGAGGATTGCCTTCTTACAGCAATACATCTGCACTGCTCACTGTGGAGTAGACGGGGTATAAGGCCACAGTTGCCATACACTTGTCTGATTAAATACCGTATGTTGTATTAATTTCTGGCCATGCATGGATGGGATCAGATGTTGGCTGTTAGATGGATCCAGTCTCTAGCTGAAGGGTTCCTCTCCCCCCTGTGGTTATTTGCCACTGTCATATCCCCACTAAGCATCTTGGGTAATTACTATGCCTTTATTTAGCAATTGCATTCTTATTTCTCTGGATGTTCCCTGTGTGGGTATTCACAACAAGAACGTTCTATAGTCAAGCTTATGTGTGTTTATGACTTCTTTAATGTTGCTACACCACAGTATTGATAActtgtcattttcttttaatgcttttttacATGGTTAGCAGGAGTGCAAGTAGAATTCCACTAGAATGTGTGCGTCtgttcagttacaaggctgtaactaaaacaacattgtctgaaaaataatacagaaaaaactttgtatatatgtgtgagtATGTTTCATTAATTGTATATTGAGTTCATTGAGTGGTCTGGTCAAACTGGACATAACCTTCCTTTGTGATCTAATCGTGATATTTGTGTCATGCAAAAAGCATATTGTCACTGTGTTTATTTCATAATTTAACTTTAGTAGTATTGCATGGCCCTCTAGGAAGATTTTGCATCTCTTGAACTGTAAGGCATTTTCAAAAAAGCAATTAGGTCAGCtcagacaaacaaacagtaaattattttttcttttttcttaaaagTTCAAATGTTGAAGGTGCGAGTTTTCACCAGACGTCAGTGATAGATTAAACAGCCTTTTTCTAAAAGCATGAAAATGTGGTCAGAATTGTATCATAAAGACATATAAATCATTCACTGTCCTGATATCAAGCGTGTGTGATGCCACTGACTGTAGATAGAGAAAACGCCTGTTTTAACACTTATTAAAGCTACATGTACAGGCTGAAACGTCTTATCCactttcttcttatttttaaaATGGCCCGACCGTCATTTGGCTCCTTCTGGTCATCCCTGAGAGTGTGAACCAGTGAGCTGTTCTGTACAGTGGGTGAGTCATCTCatcccacatgtagattttcattttgtgaagttggtctgctgtgttttatttttaggtGAACCATCTGTAATGGAAACATGAAATCAGGATTCATGGTCTTTGGCATTCATGGTTATTGCTATTATTCCATCATGATATTAGGGAGATTTGGTTATGTGATGCCCTGTAGCAAAACAGACTTGAGTTGTGTGCATGCTTGTTTAGATGTGTACTGATCGCTAAATGTTCTTCCATGTTTCCCGCCATCTTAGTGGGTGCAGTCTATgaataaaacaatgaaacatG

Function

NR:

description
PREDICTED: protocadherin alpha-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814142.1 True 4277 mRNA 0.40 2 20089540 20145603

Neighbor

gene id symbol gene type direction distance location
LOC120566533 LOC103375287 coding upstream 4333 20082373 ~ 20085207 (+)
LOC120566532 LOC103375285,LOC102798382,LOC102309450,LOC101072791,LOC101076589,LOC106516975 coding upstream 11171 20075753 ~ 20078369 (+)
LOC120566530 LOC103375287 coding upstream 14565 20072355 ~ 20074975 (+)
LOC120567232 LOC103375287 coding upstream 18483 20068463 ~ 20071057 (+)
LOC120566529 LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975 coding upstream 21975 20064986 ~ 20067565 (+)
LOC120567223 NA coding downstream 15977 20161580 ~ 20164367 (+)
LOC120567228 LOC104958880 coding downstream 19245 20164848 ~ 20167665 (+)
LOC120567231 LOC107395886,LOC103366346 coding downstream 22661 20168264 ~ 20171057 (+)
LOC120567224 NA coding downstream 25972 20171575 ~ 20174355 (+)
LOC120566714 LOC105417358 coding downstream 29511 20175114 ~ 20177899 (+)
LOC120567444 NA non-coding upstream 90739 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 134577 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 147825 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 241262 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 487447 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 128230 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 564906 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 954881 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 961895 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1047463 21193066 ~ 21194849 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 28202 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 437066 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1119594 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2189809 17890170 ~ 17899731 (+)
G105677 NA other upstream 2403841 17682919 ~ 17685699 (+)
G106465 LOC104955902 other downstream 206118 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 789126 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1134084 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1143928 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1303197 21448800 ~ 21468827 (+)

Expression


Co-expression Network