LOC120567239 (LOC103375145)


Basic Information

Item Value
gene id LOC120567239
gene name LOC103375145
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20105923 ~ 20108462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814147.1
TACATCCTGTACTCTCACAGCGAATATTCAGCGTCCGTGATTTTGATTATACACTGGAAAATGTACATATTATTTTAGGTACatctatttttcttttgatgAAGGAGTCGTTATTCTGAATCATCGGGATAAATTTTTAATTTCTAGTTATGGAGCAGAAAGGACGTGGAACATCGAGAGCGCAATGGCGGTGGATCGCTTTCATTGTTTCAATAATTTTGATGTGGAGCAGAGCTTCGGCGCAGTTAAGATATTGCATCGCTGAGGAAGTTGAAGAAGGAACTGTTGTTGGGAATATAGCGAAGGACTTGGGATTGGAGAAGAACACACTGAAAGAGAGAGGATGCCGCATTGTTGAGGGTTCCACTGAGTCATTTTTTCATGTAAACCAGAACGACGGGTTATTGTACGTTGACCGAATAATTGACAGGGAGAAGGTTTGTGAGCGGAGTAGTGTGTGCTTGATCAACTTAAAAACTGTGCTGGAAAACCCTCTCGAAATTCATTATGTGACTGTAGAGGTGCTGGATGTGAACGACCACTCTCCTACCTTTTCAACGAAAGAGTCACGTCTCGAAATTTCAGAGTCAGTTGTACCAGGTTTGCGCCTCCAGCTGCAAGCAGCACACGACCCTGATGTTGGTCAGTTTTCAATCCAGGAGTATAAACTAAGTCCTAGTGATCATTTTCGTTTAGAAGTCAAAGATCGTGGAAAAGATGGAAAGATACCAATTTTAGTTTTACTGAAGACGCTGGATAGGGAAACAAAGACAAATCATAAATTGCTTCTTACAGCTATTGATGGAGGGAAACCAAGTAAATCTGGAAGAGCTGAAATTACAGTTGACGTTTTAGACGTCAATGATAATATGCCAGTATTCAACGAAGACACATACTCTGTACGTTTGGATGAGAATGCTCCCATTGGCACAACAATTATAAAAGTAAATGCTTCTGATTTAGATGAAGGATCTAATGGCGAGATTGCGTATTCATTAggaaaaaatgtgaacagcAGAATACGTGAACTTTTTCGTGTAGATCCAACTACAGGTGACATTATTGTTCAAGATCTGATAGACTTTGAATTAGAGGAAAGTTATGAAATTGATATACAGGCGTCTGATAAAGGATCAGCTCCTTTGAGGACAGACAAAAGTGTGTTGGTGAATATTGTTGATGTGAATGATAACGCCCCTCATATAGAGGTTACATCATTTTCAAGGGCAATACCAGAGGATGCAAGACTGGGAACCACTGTGGCATTAATCAGTGTTCTTGATAAAGACTCTGGTCTTAACGGGAAAGTGATTTGCTCCTTTAGTAAAGATGTACCTTTCATAATATCACCTTCAACACAAGACAACATGTATTCTATAGTCACAAAATCGCCCTTGGATAGAGAAAAGCAGTCCATATATGATGTTACAATTGTTGCAAAAGACGCAGGTGTTCCTTCGTTGTCTTCTGAAAAAGGCATTAGTATTGTTGTATCAGATGTGAATGATAACAGTCCAAAGTTTTTAGCCAGCCCTTACACATATTATGTTATGGAGAACAACTCTCCAGGAGCTTCAGTGTTTTCTGTGAGGGCATCAGACCACGACGAGGGTGATAATTCTCGTATTTTATACCATATTTTGAGAGCTGGAAAAGAGAATAACAAACTCCAATCATTCAGTCTTAACATAAACTCTGAAACTGGAGACATTATGGCGCTGAAAAGTTTTGACTTTGAAACTCTGAAAACATTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCTGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTACTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCCGGCAGCCATGCGAATACACTAGTGCTGCCTGACAGGAGAGGGACATCTGGAGAGGTGAGTAAATAGTTATATTGCATATAC

Function

NR:

description
PREDICTED: protocadherin alpha-8-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814147.1 True 2540 mRNA 0.41 1 20105923 20108462

Neighbor

gene id symbol gene type direction distance location
LOC120567243 NA coding upstream 3826 20099593 ~ 20102097 (+)
LOC120567242 NA coding upstream 7344 20096016 ~ 20098579 (+)
LOC120566533 LOC103375287 coding upstream 20716 20082373 ~ 20085207 (+)
LOC120566532 LOC103375285,LOC102798382,LOC102309450,LOC101072791,LOC101076589,LOC106516975 coding upstream 27554 20075753 ~ 20078369 (+)
LOC120566530 LOC103375287 coding upstream 30948 20072355 ~ 20074975 (+)
LOC120567236 LOC108242382,LOC102303179,LOC106516872,LOC101076589,LOC101068049,LOC107374054 coding downstream 6460 20114922 ~ 20145603 (+)
LOC120567223 NA coding downstream 53118 20161580 ~ 20164367 (+)
LOC120567228 LOC104958880 coding downstream 56386 20164848 ~ 20167665 (+)
LOC120567231 LOC107395886,LOC103366346 coding downstream 59802 20168264 ~ 20171057 (+)
LOC120567224 NA coding downstream 63113 20171575 ~ 20174355 (+)
LOC120567444 NA non-coding upstream 107122 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 150960 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 164208 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 257645 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 503830 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 165371 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 602047 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 992022 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 999036 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1084604 21193066 ~ 21194849 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 44585 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 453449 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1135977 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2206192 17890170 ~ 17899731 (+)
G105677 NA other upstream 2420224 17682919 ~ 17685699 (+)
G106465 LOC104955902 other downstream 243259 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 826267 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1171225 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1181069 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1340338 21448800 ~ 21468827 (+)

Expression


Co-expression Network