si:ch211-175m2.5 (LOC104942593,LOC103358585,LOC101471829)


Basic Information

Item Value
gene id si:ch211-175m2.5
gene name LOC104942593,LOC103358585,LOC101471829
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21692687 ~ 21697083 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814151.1
GAAGCAAAACAGAACCGCCAATAAAcaccaaagaagaagaggaagaagcaaAACAAAATATTCTAACCACACAAGAGGTAACTGAAGTGGTTAACGCTGTCATGATCATTGGATGCTTATAACCCATTATATTAATTTAACAACAATGACCACTGACAGTTGAAAAGACTggtaattgtttttattgtactaAGTTACATTAGCAGCAGTAACGTCGATACCTCATAAGTATTTGCTTGACTTCTGTTAATCGCTTTCGAAAGACTGGAAACTACCctagctagctgacagctagttTTTGACGGTCACTTTCCAGCCAGGCAAGGCAACTGACATGGCGAGTAACCTCGTCTCGAAGTTATTTCGTCCCTCTGTGTTCACACAGCTGGCGTCTCTACGGTCGGGTTGCGTGTCTCGGGTGAAGGCGGCGGCGGGCATTAGACATTTCTCCAGCGACCCGCCACCGGAGAACATCAGTCGCTATCCAGTTCCTTACAAGAAAGAGCTACCTTATGATATAGTGGAGCTTATGGAAGAGGTTGAgtcaaagGGAGGCTTTTTGCCCAATGTCTTCAAAGTCCTCTCCCATAGACCAGCAGAGTTCAGAGCCTTCTTCGCTTACTACAATGAACTAATGAACAAAGagtcagGCGGATTAACCAAGGCAGATCGTGAGCTGATTGTAGTGGCTACTAGTATCCACAACAAGTGTCTTTACTGCGTGGTATCCCACAGTGCACTGCACCGCATCTACTCTAAGAAACCCACTCTTTCTGATCAGGTCGTCGTTAACTATGAGAATGCAGAGCTGTCACCTCGGGAGCGTGCCATGCTGGACTTTGCGATGGCTGTGTGTCGCTGCGACACCATTACAGAGCAGCATTTCCAGTCTTTGGAGGAAGTGGGTTTTGACCGTGAGGATGCGTGGGACATTGCTGCCATCACTGCTTTCTTTGCCATGTCCAACCGGCTCGCCCACCTCACAGACATGAGACCAAACTTAGAATTTTATAACATGGGCCGGTTACCACGGGACAAGAGCAAGGACAAAGGGCAAGTGAAAGGGGAGTAGCGTTACAGACAAGATTATCAGATGTCgagatgttttttttgaggTGCAATTTACAGATTTGAACGTTAACTTTGGAATTAGTCAGTTTTTCCTGAGATCATAATTTAGGTTCCACAGTTGCTTGACTGAGTCCGGGTAGGCACGGAGAACAACTAGAGATTGACATGGGAAGGAAGCAAAATAACTGACCTCCCTGATATTTTAGTACATGCTTAAAATCACTCAAGTGTTTTTACCTGCCCTTTACTTTGAACATAGCACGTAAAATTCAGGATTCTATAAAGTATGTGTGCCTTTTAAAAATGATGCTCATTTAGATGACGTAGAAGCATGAGAGagacagtttgagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgataggGTAGACATGGCTTTGTTAATTTGTCATTGTGTGTAACTCATTGTGTCTGCTTATTTACCTTGACATTTTGAATTTTAGGTGGCTCTGGTTGTTTACTGGATAGTTGCCATATGATGGGGAAAAGTTATTTCTTTGCAGCTGGTTgtctattacattacatttaatgACACCGTTTCATAATTGTCTTTTAACTTCCATGTTTGGGTAATAAAAcctatgaaaaaaatcacataaaACTCAGAATCTCGAACCAGCTCTTTATTTCATTGTTCACCAGTTGAAAGTGCTTTGTGTTATGATGTGTTGCTCAGTGCATTGTTACTGTGACTACCAGGAAGAGTGTAAATAACTTGCTGGCATTGTTCACAGCAATGTAAGCGGGTGTTGTAAAgtattaaaatgaaaactgcTTCTCTAA
>XM_039814152.1
TCAACATCTGACATGTCATGAAGCAAAACAGAACCGCCAATAAAcaccaaagaagaagaggaagaagcaaAACAAAATATTCTAACCACACAAGAGACTGGAAACTACCctagctagctgacagctagttTTTGACGGTCACTTTCCAGCCAGGCAAGGCAACTGACATGGCGAGTAACCTCGTCTCGAAGTTATTTCGTCCCTCTGTGTTCACACAGCTGGCGTCTCTACGGTCGGGTTGCGTGTCTCGGGTGAAGGCGGCGGCGGGCATTAGACATTTCTCCAGCGACCCGCCACCGGAGAACATCAGTCGCTATCCAGTTCCTTACAAGAAAGAGCTACCTTATGATATAGTGGAGCTTATGGAAGAGGTTGAgtcaaagGGAGGCTTTTTGCCCAATGTCTTCAAAGTCCTCTCCCATAGACCAGCAGAGTTCAGAGCCTTCTTCGCTTACTACAATGAACTAATGAACAAAGagtcagGCGGATTAACCAAGGCAGATCGTGAGCTGATTGTAGTGGCTACTAGTATCCACAACAAGTGTCTTTACTGCGTGGTATCCCACAGTGCACTGCACCGCATCTACTCTAAGAAACCCACTCTTTCTGATCAGGTCGTCGTTAACTATGAGAATGCAGAGCTGTCACCTCGGGAGCGTGCCATGCTGGACTTTGCGATGGCTGTGTGTCGCTGCGACACCATTACAGAGCAGCATTTCCAGTCTTTGGAGGAAGTGGGTTTTGACCGTGAGGATGCGTGGGACATTGCTGCCATCACTGCTTTCTTTGCCATGTCCAACCGGCTCGCCCACCTCACAGACATGAGACCAAACTTAGAATTTTATAACATGGGCCGGTTACCACGGGACAAGAGCAAGGACAAAGGGCAAGTGAAAGGGGAGTAGCGTTACAGACAAGATTATCAGATGTCgagatgttttttttgaggTGCAATTTACAGATTTGAACGTTAACTTTGGAATTAGTCAGTTTTTCCTGAGATCATAATTTAGGTTCCACAGTTGCTTGACTGAGTCCGGGTAGGCACGGAGAACAACTAGAGATTGACATGGGAAGGAAGCAAAATAACTGACCTCCCTGATATTTTAGTACATGCTTAAAATCACTCAAGTGTTTTTACCTGCCCTTTACTTTGAACATAGCACGTAAAATTCAGGATTCTATAAAGTATGTGTGCCTTTTAAAAATGATGCTCATTTAGATGACGTAGAAGCATGAGAGagacagtttgagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgataggGTAGACATGGCTTTGTTAATTTGTCATTGTGTGTAACTCATTGTGTCTGCTTATTTACCTTGACATTTTGAATTTTAGGTGGCTCTGGTTGTTTACTGGATAGTTGCCATATGATGGGGAAAAGTTATTTCTTTGCAGCTGGTTgtctattacattacatttaatgACACCGTTTCATAATTGTCTTTTAACTTCCATGTTTGGGTAATAAAAcctatgaaaaaaatcacataaaACTCAGAATCTCGAACCAGCTCTTTATTTCATTGTTCACCAGTTGAAAGTGCTTTGTGTTATGATGTGTTGCTCAGTGCATTGTTACTGTGACTACCAGGAAGAGTGTAAATAACTTGCTGGCATTGTTCACAGCAATGTAAGCGGGTGTTGTAAAgtattaaaatgaaaactgcTTCTCTAA

Function

NR:

description
uncharacterized protein LOC110488810 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814151.1 True 1942 mRNA 0.43 5 21692687 21697064
XM_039814152.1 False 1775 mRNA 0.44 6 21692687 21697083

Neighbor

gene id symbol gene type direction distance location
LOC120566697 NA coding downstream 71079 21619863 ~ 21621608 (-)
LOC120566537 LOC104958700,LOC103358614 coding downstream 182684 21507069 ~ 21510003 (-)
LOC120566376 NA coding downstream 192047 21494894 ~ 21500640 (-)
tbc1d10c tbc1d10c,LOC106938142 coding downstream 254524 21429494 ~ 21438163 (-)
zgc:113229 NA coding downstream 269074 21416694 ~ 21423613 (-)
pcdh11 LOC104946172,LOC103356418,LOC101473199 coding upstream 187689 21884772 ~ 22015753 (-)
tsc22d3 LOC103390732,LOC104954424,LOC101161414,LOC103356417,LOC102306956,LOC102786303 coding upstream 678183 22375266 ~ 22408211 (-)
slc16a2 slc16a2 coding upstream 1021811 22718894 ~ 22743071 (-)
LOC120567161 NA coding upstream 1081322 22778405 ~ 22783217 (-)
dpf2l dpf2 coding upstream 1133327 22830410 ~ 22840569 (-)
G106872 NA non-coding downstream 201866 21490056 ~ 21490821 (-)
G106852 ran,LOC105022884 non-coding downstream 245961 21443397 ~ 21446726 (-)
G106848 NA non-coding downstream 249598 21440824 ~ 21443089 (-)
G106813 NA non-coding downstream 284398 21360316 ~ 21408289 (-)
G106959 eef1g non-coding upstream 3866 21700949 ~ 21725692 (-)
G106989 klhl4,LOC104919997 non-coding upstream 94722 21791805 ~ 21792629 (-)
G106990 NA non-coding upstream 98728 21795811 ~ 21796361 (-)
G106991 NA non-coding upstream 101140 21798223 ~ 21800003 (-)
LOC120567355 NA non-coding upstream 157325 21854408 ~ 21857861 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 505034 21178852 ~ 21187653 (-)
G106728 mif other downstream 561717 21127838 ~ 21130970 (-)
LOC120566885 ppp2r2c other downstream 582620 21075757 ~ 21110067 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 1458763 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 1711054 19971833 ~ 19981633 (-)
G106988 NA other upstream 93170 21790253 ~ 21790725 (-)
G107015 NA other upstream 422602 22119685 ~ 22120067 (-)
G107117 NA other upstream 994077 22691160 ~ 22692831 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 1293904 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 1395482 23092565 ~ 23177026 (-)

Expression


Co-expression Network