yif1a (yif1a)


Basic Information

Item Value
gene id yif1a
gene name yif1a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23520126 ~ 23526960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814157.1
GTTTTCTGCCACGCAGGCACACTGAAGTCAACCAACCGCAGTGGATCATGGGTGGGATCCGCCGAGCCAGTCTGGTAGCCACGTAGCTAGCTGTGCAGctAACGTCAGTGAACGTCATAATGGACTTGCCACATCAGGGGTACCGAGCAACTAAACCAAGAGCTCGTGCAGCTCCCCCCACAGCAGATTCTGTCCTGTTTGATGACACAAGCTCTGCAGCACCAGCAATGAACAGTCAAGGATACTATACTCCTGGGTACAATATGGCAGGACCCTCAAATAACATGCAAGGAGGTGCTGGACCTGACCTGTTTGCTGACCCAATGGCTAACGCTGCAATGATGTATGGCTCCTCATTAGCCAACCAAGGAAAGGATATGGTGAACAAAGAGATCAGCAGATTCATGTCTGTGAACAAGCTGAAATACTTCTTTGCCGTCGACACTAGATATGTATTGAAGAAACTTATGATCCTCATGTTCCCTTACACACATCAGGATTGGGAAGTACGTTACCATAGGGACACTCCACTGACTCCAAGACAGGATGTGAATGCACCGGATCTTTACATACCGACAATGGCTTTCATTACCTACATTTTACTTGCTGGAATGGCCCTCGGCATTCAAAAACGGTTCAGTCCAGAGGTTCTTGGACTGTGTGCCAGCACCGCCCTTGTGTGGGTCATCATCGAGGTCTTGGTGATGTTGTTGAGTTTGTACCTGCTGACAGTCCACAGCGACCTCTCAACCTTTGATCTCATTGCCTACAGTGGCTACAAATATGTTGGGATGATCTTCACAGTGTTGTGTGGTTTACTGTTTGGCAGTGATGGGTATTACGTGGCTCTTGCCTGGTCCTCTTGTGCCCTTATGTTCTTCATTGTTCGATCTCTGAAAATGAAgatccttccctctctctcccctgactCCATGGTAACTGGATCAAGTGCCAAACCTCAATTCCGCCTTTATATAACTGTGGCTACTGCAGTGTTTCAGCCAATCATTATATATTGGTTAACCTCTCACTTGGTCAGGTGACCGTGAGGCATTAAATAACCTGAAGTCCAAGTGTGTTGGACCCAAACATTTGGTTATTGAGTGTTTATACACCTGCCTTTATACGCTTTTTTGTCAGTAAACTCAAAACATATGTAGACGGTGTTAAACTGCAGCGTGTGTTGAACTTGTCAGAGGGACATGTGACACAGAAAATGTCTCACTGgaagtagttttttcaccattAGTGCACAGTAACTCTGGCAAATGCTTATTTTGGCGATCTAACTTTGAACACAAGGGCTTGTTTAATCATAACTCAGATTCAGTTCAAGTTGCTCTACAATATTTACACCAGACAATACCACACAGACATaaaacgcacatacacacatgattCAAGTACCATTTTTTTCTGGTATGGTAATGTTGCTGCATTATCCCCCCTTTCTCTTGTGAGTCTTGGATTTTATTTATCTACATTCGAAAGAGCATGACaatgtttgatttttttgtagaaaaaaaataaatatatttagctTTGTGTATTCAATTTAAACAGTTTCTGAgacatttgtgtatttgttgtatctgtttttttttccttctgaaTAATACTGATTTGTGTCAGTTAATATGATTTAATTTCTAAACAGTCTATAACATTGACATAAGTGTTGCAAAGTTTACAGCTGTTCTCAAAGGGGGGAAAGTAACTAAAATGAATAAACTTAGAATGAATGTGCTTATGCACAATTTTGATGTA

Function

symbol description
yif1a Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be integral component of Golgi membrane. Is expressed in blood; liver; pectoral fin; and ventral mesoderm. Orthologous to human YIF1A (Yip1 interacting factor homolog A, membrane trafficking protein).

NR:

description
PREDICTED: protein YIF1A isoform X1

GO: NA

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814157.1 True 1767 mRNA 0.42 9 23520126 23526960

Neighbor

gene id symbol gene type direction distance location
si:ch211-145o7.3 LOC104968223,LOC103390737 coding downstream 116 23514615 ~ 23520010 (-)
atl3 atl3 coding downstream 5950 23501341 ~ 23514176 (-)
cfl1 cfl1 coding downstream 20078 23493111 ~ 23500048 (-)
foxo4 foxo4 coding downstream 67070 23443552 ~ 23453056 (-)
trnaf-gaa_66 NA coding downstream 146118 23373936 ~ 23374008 (-)
ccdc85b ccdc85b,LOC102791751 coding upstream 9739 23536699 ~ 23539386 (-)
mrpl11 mrpl11 coding upstream 61170 23588130 ~ 23626365 (-)
LOC120566236 NA coding upstream 100131 23627091 ~ 23630156 (-)
si:rp71-46j2.7 LOC103373861,LOC102778070 coding upstream 104542 23631502 ~ 23639346 (-)
slc25a5 slc25a5,LOC106926499,LOC104931197,LOC103140121 coding upstream 116328 23643288 ~ 23645496 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 256227 23242037 ~ 23263899 (-)
G107282 NA non-coding downstream 295670 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 338409 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 546366 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 643667 22875496 ~ 22876459 (-)
G107610 NA non-coding upstream 265094 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 672539 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 761189 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 905041 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 921161 24448121 ~ 24450769 (-)
rnaseh2c rnaseh2c other downstream 333068 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 343100 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 385341 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 526897 22990987 ~ 22993229 (-)
G107117 NA other downstream 827295 22691160 ~ 22692831 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 357628 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1046481 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1335010 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1736212 25263172 ~ 25264864 (-)
G107989 NA other upstream 1752643 25279603 ~ 25288086 (-)

Expression


Co-expression Network