LOC120567260 (LOC103359160,LOC108240568,LOC106514372,LOC101486456)


Basic Information

Item Value
gene id LOC120567260
gene name LOC103359160,LOC108240568,LOC106514372,LOC101486456
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17451649 ~ 17458251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814162.1
CCTGTTGACTGCAAACCTACTGCAtctaagagaaagaaaaaagaagagcaaGAACTGACTGAAGCTATGATCTCCAAATTACAGAAAACCATTAGACCAGTGTGGGCTGTCAGAGGACTGCATAAATCTGCAGTGGAAGTCTTGAGGCGCCCGGCCCCTGAGGACACAGTCACAGCCAGCTTTGGGAAGTTCATCAGTGAAGTAAAGCCCCAGCACTTGTCCTCTGTGGTGCTCCACCGCAGTAAAAGGATGGTGCTGGACAGCATTGGAGTTGGTGTGATTGGCAGCACAACAAACGTGTTTGAGCTGGCTCTGCAGCACTGCCAGCACATGTATGCTCCTGATGACATCAGCTCTGTGTACGGACGCAGGGGCACCAGGCTCTCCCCGACACTGGCAGCTTTCGTCAATGGAGTGGCTACTCACTCCATGGACTTTGATGATACATGGCACCCTGCCACTCATCCCTCAGGAGCAGTCCTTCCTGCTGTGTTAGCACTCAGTGACATGATGTCTGCTAACAGCAAACCCAGTGGCCTGGACTTCCTGCTGGCGTTCAACATCGGCATTGAGATCCAGGGCAGATTGATGAGGTTCTCTAATGAGGCCCACAACATCCCCAAGAGGTTTCACCCTCCCAGTGTGGTGGGGACCATGGGAAGTGCAGCCGCCTGTGCTCGCCTCTTGTCTTTGGATCCCTCCCAGTGCAGTCATGCCTTGGCTATAGCTACTTCTCTATCTGGAGCCCCAATGGCTAATGCTGCCACTCAGTCTAAACCACTCCACATCGGTAATGCCTCACGTTTGGGGCTGGAGGCTGCTCTGCTAGCATCCAGAGGCCTAGAGGCGAGTTCTCTGGTCCTGGATGCTGTCACTGGTGTGGCTGGTTTCAATGCTTTTTATGAAGACTATGTACCGCAGCCTTTAGAATTATCCAATGATGACGGCCATATGTTCCTACTAGAGGAGCAGGACATGGGCTTTAAGCGCTTCCCTGCCCATCTAGGGATGCACTGGGTGGCAGATGCTGCAGCCTCGGTCCATAAGATTCTTGTGGGATTTGGCCCTGGCACTGTCTCCCCAGCTCAAGTCCAAGACATCCTGCTCAGGGTCCCCAAATCAAAGTACATCAACAGGCCTTTCCCTGACTCTGAGCATGAGGCACGCCACTCTTTCCAGTTCAATGCTTGCAGCGCTCTCCTGGATGGGGAGGTGACTGTGCAGTCTTTCACACCCGCTGCCTTAAGACGCCCTGACCTACTCGCTCTGCTGAGCCGTGTTCGCATGGAGCATCCCCAAGACAACCCAGCTAATTTTAACAGTATGTATGGTGAAGTCCAGGTGACACTTGTTGGGGGAGACATTCTGAAGGGACACTGTGACACCTTCTACGGTCACTGGCGCAACCCGCTAACCAATGAGAGCTTGAGGAAGAAGTTCAGAAATAACGCGGGGGCCGTGCTTCCCTCAGAGAAGGTTGAGAGGCTGATTGATGTGGTGGAGGAGCTGGACAGACTTGGGGACTGCAGGGCCCTTCTCTCACAGCTGCAATGAGAACTCAGACATACACAATGAGAGCAGCACAGAAATCATtgcacataaatacatataccAAATTAGTTACagtaacatttatttaaaatgacacatttgTCCAAATCAATGCTAAGGAATATCACATGTTTACCTATTGGAAATGGGGAAAAAGAGCTATAGGCCACTACACTGTGCACTGCAATTATGTTTCCATATGCTATGTCTCGTTtgacaaatactgaaatatctGTTGAGACATgtcaaaacatatttttctgaTTTACATTGTGCCTAATTATTTCATTGTATTATtctaattttttaaattaagaaatCAATATGAGTTGTAAAATGTGATCTAGTTACATTGCAAAGTGAAATTAAGAAAGATGTATGTACTTTATAATGTATTTATGAGGTTTATTATGTATTCATACTTTCAGATAGAAACATTTAACAAATATTACAAAATTCTGTACTTTATACTGTGTTTATGTGCCAAA
>XM_039814163.1
cagaccataatttctaaatatctgtccgaacccggcccggcccgtcccGTCCGGGACCCGTCGGGCTCAGTTCGGGTATCCATACCTTAGTGTGGACAGATGAGCACATGTATGCTCCTGATGACATCAGCTCTGTGTACGGACGCAGGGGCACCAGGCTCTCCCCGACACTGGCAGCTTTCGTCAATGGAGTGGCTACTCACTCCATGGACTTTGATGATACATGGCACCCTGCCACTCATCCCTCAGGAGCAGTCCTTCCTGCTGTGTTAGCACTCAGTGACATGATGTCTGCTAACAGCAAACCCAGTGGCCTGGACTTCCTGCTGGCGTTCAACATCGGCATTGAGATCCAGGGCAGATTGATGAGGTTCTCTAATGAGGCCCACAACATCCCCAAGAGGTTTCACCCTCCCAGTGTGGTGGGGACCATGGGAAGTGCAGCCGCCTGTGCTCGCCTCTTGTCTTTGGATCCCTCCCAGTGCAGTCATGCCTTGGCTATAGCTACTTCTCTATCTGGAGCCCCAATGGCTAATGCTGCCACTCAGTCTAAACCACTCCACATCGGTAATGCCTCACGTTTGGGGCTGGAGGCTGCTCTGCTAGCATCCAGAGGCCTAGAGGCGAGTTCTCTGGTCCTGGATGCTGTCACTGGTGTGGCTGGTTTCAATGCTTTTTATGAAGACTATGTACCGCAGCCTTTAGAATTATCCAATGATGACGGCCATATGTTCCTACTAGAGGAGCAGGACATGGGCTTTAAGCGCTTCCCTGCCCATCTAGGGATGCACTGGGTGGCAGATGCTGCAGCCTCGGTCCATAAGATTCTTGTGGGATTTGGCCCTGGCACTGTCTCCCCAGCTCAAGTCCAAGACATCCTGCTCAGGGTCCCCAAATCAAAGTACATCAACAGGCCTTTCCCTGACTCTGAGCATGAGGCACGCCACTCTTTCCAGTTCAATGCTTGCAGCGCTCTCCTGGATGGGGAGGTGACTGTGCAGTCTTTCACACCCGCTGCCTTAAGACGCCCTGACCTACTCGCTCTGCTGAGCCGTGTTCGCATGGAGCATCCCCAAGACAACCCAGCTAATTTTAACAGTATGTATGGTGAAGTCCAGGTGACACTTGTTGGGGGAGACATTCTGAAGGGACACTGTGACACCTTCTACGGTCACTGGCGCAACCCGCTAACCAATGAGAGCTTGAGGAAGAAGTTCAGAAATAACGCGGGGGCCGTGCTTCCCTCAGAGAAGGTTGAGAGGCTGATTGATGTGGTGGAGGAGCTGGACAGACTTGGGGACTGCAGGGCCCTTCTCTCACAGCTGCAATGAGAACTCAGACATACACAATGAGAGCAGCACAGAAATCATtgcacataaatacatataccAAATTAGTTACagtaacatttatttaaaatgacacatttgTCCAAATCAATGCTAAGGAATATCACATGTTTACCTATTGGAAATGGGGAAAAAGAGCTATAGGCCACTACACTGTGCACTGCAATTATGTTTCCATATGCTATGTCTCGTTtgacaaatactgaaatatctGTTGAGACATgtcaaaacatatttttctgaTTTACATTGTGCCTAATTATTTCATTGTATTATtctaattttttaaattaagaaatCAATATGAGTTGTAAAATGTGATCTAGTTACATTGCAAAGTGAAATTAAGAAAGATGTATGTACTTTATAATGTATTTATGAGGTTTATTATGTATTCATACTTTCAGATAGAAACATTTAACAAATATTACAAAATTCTGTACTTTATACTGTGTTTATGTGCCAAA

Function

NR:

description
PREDICTED: cis-aconitate decarboxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814162.1 True 2039 mRNA 0.47 6 17451649 17458251
XM_039814163.1 False 1816 mRNA 0.47 4 17451649 17456527

Neighbor

gene id symbol gene type direction distance location
LOC120567258 LOC103359155,LOC104923198,LOC101474624 coding downstream 6589 17443222 ~ 17445060 (-)
LOC120566521 LOC103359160,LOC108240568 coding downstream 94349 17351254 ~ 17357300 (-)
LOC120566998 LOC103359155,LOC104923198,LOC101474624,LOC106953605 coding downstream 107690 17342141 ~ 17343959 (-)
prps1b prps1,LOC104923196,LOC103391169,LOC101476181 coding downstream 287437 17159499 ~ 17164212 (-)
LOC120566760 NA coding downstream 293132 17154138 ~ 17158517 (-)
LOC120567262 LOC103359155,LOC104923198,LOC101474624,LOC106518113 coding upstream 22045 17480296 ~ 17482118 (-)
LOC120566359 LOC106925651,LOC106940816,LOC108240559 coding upstream 36722 17494973 ~ 17498736 (-)
glod5 glod5 coding upstream 48872 17507123 ~ 17510542 (-)
rlim rlim,LOC104950806 coding upstream 52698 17510949 ~ 17519476 (-)
abcb7 abcb7,LOC102795903 coding upstream 129425 17587676 ~ 17618547 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 115697 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 126694 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 298056 17152171 ~ 17153593 (-)
G105577 NA non-coding downstream 333385 17117751 ~ 17118264 (-)
G105549 NA non-coding downstream 396027 17052505 ~ 17055622 (-)
G105749 NA non-coding upstream 296963 17755214 ~ 17755915 (-)
G105759 NA non-coding upstream 370371 17828622 ~ 17831148 (-)
G105768 NA non-coding upstream 416585 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 418781 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 470581 17928832 ~ 17933470 (-)
frmpd3 frmpd3 other downstream 194717 17166896 ~ 17256932 (-)
tmsb1 NA other downstream 300033 17142082 ~ 17151616 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other downstream 488113 16957643 ~ 16963536 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other downstream 776794 16524356 ~ 16674855 (-)
unc5a unc5a,LOC102788949 other downstream 1347855 15960197 ~ 16103794 (-)
nexmifb kiaa2022 other upstream 63890 17522141 ~ 17577811 (-)
kif3a kif3a other upstream 209833 17668084 ~ 17748547 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other upstream 325309 17783560 ~ 17795391 (-)
LOC120566288 NA other upstream 398833 17857084 ~ 17859755 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 528945 17987196 ~ 17995350 (-)

Expression


Co-expression Network