LOC120567264 (ddx41)


Basic Information

Item Value
gene id LOC120567264
gene name ddx41
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 16287081 ~ 16297362 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814167.1
TCAGCGTTCCGTACATTATCGAAGCTTCCTGTGTTGTGAAAACATGTGTATTAGCTAGGTCTATTTATTGAATTGTGGGTAGAGTATTTGCTCAACAATTTTGTGGCTTTAGCCAGTACATAGAGAACGTTACTGTattcataaataaaatggaaaccGAAAATCGACCCCAAAAGAGATCCCATGGGGAGGATGAAAGGTCTGGATCCGAAGGATCAGAGGATGACGATTATGTTCCTTATGTTCCAgtcaaaataagaaaacatcAAATGatacagaagaTGTTACGTCTGCGAGGGAAGGCAGTGGACGAGGAGCAGAAGGACAGTGGGGAGGAGCAGAGAGATGAGGACGAGGGTCTGGGTCCACGCTCCAATGTCAGTCTCCTTGACCAGCATCAGCACCTCAAAGAAAAAGCAGAAGCCCGTAAGGAGTCGGCCAAGGAGAAGCAgctgaaagaggaagagaagattCTTGAGAGCGTTGCAGAGGGCAGAGCTCTAATGTCCGTAAAAGAAATGGCCAAAGGTATCATATACGATGATCCCATAAAAACAAGCTGGAAGGCACCACGCTACATCCTGAATATGCCAAAGACCCGACATGAGCGCGTCAGGAAGAAGTTTCACATCCTTGTTGATGGAGACGGAATCCCTCCTCCAATCAAAAGCTTCAGGGAGATGAAGCTTCCCCCAGCAATTCTAAAAGGTTTGAAAAAGAAGGGAATTGTGCATCCCACACCGATTCAAATTCAAGGAATCCCTACAGTTCTGTCAGGTCGGGACATGATTGGCATAGCCTTCACTGGTTCTGGAAAGACTTTGGTCTTCACTCTGCCAATCACCATGTTTGCgctggagcaggagaaaagGCTGCCGTTCTTTAAGAGAGAGGGACCATATGGACTCATCATCTGTCCTTCACGAGAGTTGGCGAGGCAGACTCACGGCATCATCGAGTACTACTGCAAGCTGCTGGAGGAGGAAGGAGCTCCTCAGCTGCGCACTGCCCTCTGCATCGGAGGAATGTCTGTCAAGGATCAGATGGAGGTAGTAAAACATGGTGTCCACATGATGGTTGCTACCCCTGGCAGACTGATGGACTTGCTGCAGAAGAAGATGGTGAGTCTGGACATCTGCCGCTACTTGGCTCTGGATGAGGCTGATAGGATGATTGACATGGGCTTTGAGGAAGACATCAGAACCATCTTCTCCTATTTCAAGGGACAAAGGCAAACCCTGCTTTTTAGCGCCACTATGCCCAAGAAGATCCAGAACTTTGCCAAGAGTGCGCTGGTCAAACCTATCACTATCAACGTAGGCAGGGCCGGGGCTGCCAGCTTGGATGTCATCCAGgAAGTGGAATATGTCAAAGAGGAGGCCAAGATGGTGTACCTGCTCGAGTGTCTCCAGAAAACACCACCTCCTGTGCTGATATTTGCTGAGAAGAAGGCCGATGTAGATGCCATCCATGAGTATCTCTTGCTAAAAGGAGTAGAAGCAGTGGCCATCCATGGAGGAAAAGATCAGGAGGAAAGAACAAAAGCCATTGAGGCAtttaaagaaggaaagaaagatgtCTTAGTTGCCACAGACGTTGCCTCCAAGGGTCTGGATTTCCCAGCTATACAGCATGTAGTGAATTATGACATGCCTGAGGAGATAGAAaactatgTCCATAGAATCGGAAGAACTGGAAGATCAGGCCAGACCGGTATTGCCACTACATTCATCAATAAAGGCTGTGATGAGTCTGTGTTGATGGACCTGAAAGCTCTGCTAGTTGAAGCCAAGCAGAAGGTTCCTCCAGTCCTCCAGGTGCTCCAGACAGGAGACGAGACCATGCTGGACATCGGAGGAGAGAGGGGCTGTACATTCTGCGGAGGTCTGGGTCATCGTATTACAGACTGCCCTAAGTTGGAGGCCATGCAGACCAAGCAGGTCACCAACATCGGACGGAAAGACTACCTGGCTCACAGCTCAATGGACTTCTAAGAGTTTCTAATTAAAGAGAAGATTCTCCAATGTTAAACGGAACTGAAAATTTCTGACGAAATGTTACAGCTGTGTCGGGTTACTGAACTAAGGAAGTGTATTTTTTATCATCACCTAACAGTTTGCAGGTTCATCAGATGAATTttctttttgacctttttttgcCCTGGATGTGTAGACTttgtaatatacatttttgataCTCcaattgtaaataaaaaacactatcTGTT

Function

symbol description
ddx41 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and carbohydrate binding activity. Acts upstream of or within NIK/NF-kappaB signaling; innate immune response; and response to virus. Located in cytoplasm and nucleus. Is expressed in brain; digestive system; gill; heart; and immune system. Orthologous to human DDX41 (DEAD-box helicase 41).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX41

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13116 DDX41, ABS; ATP-dependent RNA helicase DDX41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814167.1 True 2227 mRNA 0.47 17 16287081 16297362

Neighbor

gene id symbol gene type direction distance location
dok3 NA coding downstream 95 16278315 ~ 16286986 (-)
cltb cltb,LOC103471122 coding downstream 367879 15914880 ~ 15919202 (-)
hbegfa LOC104968122 coding downstream 433045 15850494 ~ 15854036 (-)
rmnd5b rmnd5b,LOC103391242 coding downstream 495529 15783802 ~ 15791552 (-)
anxa6 anxa6,LOC102795126 coding downstream 557762 15717241 ~ 15729319 (-)
fam193b fam193b coding upstream 1458 16298820 ~ 16309416 (-)
prelid1a prelid1 coding upstream 19249 16316611 ~ 16323377 (-)
npy7r LOC104967498,LOC104930063,LOC103356978 coding upstream 27211 16324573 ~ 16329511 (-)
ergic1 ergic1 coding upstream 97873 16395235 ~ 16414331 (-)
LOC120567053 LOC103356970,LOC107093447 coding upstream 211996 16509358 ~ 16513111 (-)
G105332 NA non-coding downstream 22662 16264201 ~ 16264419 (-)
G105331 NA non-coding downstream 23218 16263231 ~ 16263863 (-)
G105292 NA non-coding downstream 231053 16055583 ~ 16056028 (-)
G105289 NA non-coding downstream 326902 15959119 ~ 15960179 (-)
G105279 NA non-coding downstream 328321 15928617 ~ 15958760 (-)
G105337 LOC103356977,LOC104930064,LOC102195804 non-coding upstream 36911 16334273 ~ 16339018 (-)
G105417 NA non-coding upstream 169086 16466448 ~ 16506278 (-)
LOC120567052 NA non-coding upstream 199095 16496457 ~ 16497322 (-)
G105433 NA non-coding upstream 390117 16687479 ~ 16687729 (-)
G105435 NA non-coding upstream 390694 16688056 ~ 16688590 (-)
unc5a unc5a,LOC102788949 other downstream 183287 15960197 ~ 16103794 (-)
hnrnph1 hnrnph1,LOC102791917 other downstream 415132 15866060 ~ 15871949 (-)
tspan17 tspan17,LOC103361971 other downstream 667973 15598343 ~ 15619108 (-)
G105086 NA other downstream 1152345 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 1178483 15089404 ~ 15108598 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 226994 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 660281 16957643 ~ 16963536 (-)
tmsb1 NA other upstream 844720 17142082 ~ 17151616 (-)
frmpd3 frmpd3 other upstream 869534 17166896 ~ 17256932 (-)
nexmifb kiaa2022 other upstream 1224779 17522141 ~ 17577811 (-)

Expression


Co-expression Network