LOC120567275 (fam53c)


Basic Information

Item Value
gene id LOC120567275
gene name fam53c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18382870 ~ 18389453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814182.1
GGTATGGTCCAAAAGCTATAAATACTCAGCTAAAGAGCTCTCTATCCGGTGCACTGCTTCGGTTGCTAAGGAACCACTGAATGCAGGTGGCATAAAAATGACGGTGGCATAGTGagaaagctggtcagtctggcTGGTTGAGGTGTGGAGGGGACGCCACAAACCACGCCAGGATTCTGACTAACCCAATTTCCACTACCCTCAGTAAATGTCCTCATCATCTCCATGTCTATCCCTGGATTGTAGCTACAAATATGGTGACACTTATCACAGAGCAGCTCCGCAAGCAGAGTTTGGAAGAGCCCTATTATAAggctttctcattcaatgtgaaTGTGTCATTACCTGCAGTGGGCTCCAGTCCTACTGTCTCATGGGGTGCTTGTAGATCAACACAAGAGACTCGCTCAGCTACACAGCCATCATCCAAAGCCAACCTTCTGGATGATTCCTGTGGACTAGACTCTCCATGGCCTCCTTCCCACTCAGAAGAACTTCTCCAGAGACCGGAGGTTTCTTTTACAAACGAGGCTTTCCAAAGCTcccctccaccaccacctccaAAACGCCACTGCCGGTCCCTCTCTGTTCCAGAGGACCTATCTCGGTGTCGCTCCACCTGGCATCCTAGTGCATCAAGGGTTTGGACCCCAGTCAAACGTGGAGGAGCATCTAGTTCAAGCTCTGGAGCCAGCTCTTTGCCACTTTGTGGTCCCAGTTCCTCTTTgacctcttcctccctccactcATCTTCTAGCCCTACCTTCTTTAGCTTAGCTCTGTCCTCTGACTCCCCACTACCATGGAGCTTCTCGTGGGACCCCTGTGACAAATTGAAAGGAGCCTGTTCTGCCTCTTTTGTTACTCCTTCCTCTGGCTCCTCCTCACCAGCCCCCCTGGTGTCTCACTCAGTGCTGCAGCGCCGcttctccctctcccctgtGCACATTCAGGGTGCCTCCATGGTGCATCTGCCCCCCCAGCCCTCCCCTGCTTCTGCTCTGACATATGGCTGTTCTGGCATGGAACACCCAGCCCTGTCTCCATCTCCCACTTCAGCCTGCAGCACGCCATCCTCCTCTCGGCGCAACCTGCACCCAGCACTGCCGCGATGCCACTCGCAGCCCTGCGACATGCGCAAACCTCGCCTCAAGAGGCGCCATGACCCAGATGTTCTGCCCTGCCCCAGGCCAGGCCTTGACTTCAGCAAGATGACACAGATTGGTAATCACGAGAGCCTAATGTGTGGTAAAGGTGGCTCCATAGTTCCAGCGTCTTCCCAGGCAGAGCAGCGCTCTGCCTTTTCCCCTGCAGAGTTCCTGGGACGAGCCAGCATTGGGCCACTAAGTgaaagtgaagaagaagaagaagaggagcaagaagataaaagaaaaaggacTACAATAGATGAAGGGCAAAAGGTTATTTTTGAAAGAGACTGCACAGAACTGGACTTGAACCTTATAGAAGAAAACTGACCACTCCTTGATGCTCGAAGTGTGATTACTGCATTCATAACTATGTTAAGCACACCTGTAGGCTTTGTGCGCTCTTCTGGCAGAGTCCTTGGGAACCTGCTGCCCTCCTAAGGCACATATCCAGAGTTTATAATCAAGAACCAAGCAATTAGAAGCTAATATCAAATTACAATTTTATGATTGTAACATTTGTGCTAGTTCACTATTcaacatttcacaaaaatgtTACAGTGCCTGCCTACTCAACACTCCATAGGGAAATGTGCATGAACAAATAAGCTAGTCTTAATGCACACAGAATTTTGGTTATTTCATATTGATAATTCTTAATTTGCGTTAACCATTGGTATGGATCTTGATATCCATATCCTTTTCAAATAACATTGTATACTGGAGTAAGCAgaatgttttaatatttcttCATAATTGAATTGATTATACATGAAAAGCCAATAGATTTAATGCAATAGAGGTTGTAATAATAGAGGTATTCCTCATTGCCCAATCAGTACTAGTGTAGTCTACTTGTATTTGGGTCCCTGAATTTGGACATGACTGTATGTGAGCTGTTAAAGGTGCACACTGGTCAAAAATAATTGAGCAGCCCAAGTAACATAAGAATACTGATCTATATATAAATACTCTCATGTATGTTTAACTGAACAAATCCCAGGATTTCACTGCTGTTGCTTAAATCCCTCACAGACCCGAAAGACAAGTCTACTTTAACTGCTGTTCTGTCATTGATTCAGCTTGTCCGTTTTTGGAATAATTCTACGTCCTCAAAGGGAAATGTTCTTGTTATGGCAGAAAGGACAGCTCCccctttctgttttctttttttctagtaTTCTCAATTGCTTGAACATAAACAAACCTAGTCAACAATAATACTGATGATACTGTAAACTAACCATGCCTTAAGTTTAAAATACAGAGTTCTTGGTGCTCTGGTCTTCTTTTCACAGGCAGACATTTTTGCATTCTCCATTTGCGCTGATTCATATATTTTTGAACAGGTTGCACATGCACTATAATATTCAACTGAATAGCGGAATTGATGCTAAAACTGGACTCCTTATGGCAAAATGTAATGTACCATACTCTAGAGTGGTTAGAGTGAGTACACACTCAAACCAATGCTGAGTGTATGTGACAAAGGCGGTAGTGATGCAGATGATTTGGTGGCCTTTCAGAAATGATTTTTCATGTGTTTTCAGATGGAAATATTCCTGTTGCACAATTTATGTACAAATAAAGTTTAATAGagaatgata
>XM_039814183.1
CATCAGGACAGCTGTAGCTAGCATATTAGCTCGCAAACAGACTGCGTAACTAAGCTAGCTAATGCTACAACTAATTCAGTTAAACATTAACGGCCCAGCCGTTACATTTATTAAGACccttttcatattttattttaacgaATCATAGCCTCAACCGGGTACAATGACAAGTCATTAACCGGTAGCAGACACAACGAATGTGGCATAAAAATGACGGTGGCATAGTGagaaagctggtcagtctggcTGGTTGAGGTGTGGAGGGGACGCCACAAACCACGCCAGGATTCTGACTAACCCAATTTCCACTACCCTCAGTAAATGTCCTCATCATCTCCATGTCTATCCCTGGATTGTAGCTACAAATATGGTGACACTTATCACAGAGCAGCTCCGCAAGCAGAGTTTGGAAGAGCCCTATTATAAggctttctcattcaatgtgaaTGTGTCATTACCTGCAGTGGGCTCCAGTCCTACTGTCTCATGGGGTGCTTGTAGATCAACACAAGAGACTCGCTCAGCTACACAGCCATCATCCAAAGCCAACCTTCTGGATGATTCCTGTGGACTAGACTCTCCATGGCCTCCTTCCCACTCAGAAGAACTTCTCCAGAGACCGGAGGTTTCTTTTACAAACGAGGCTTTCCAAAGCTcccctccaccaccacctccaAAACGCCACTGCCGGTCCCTCTCTGTTCCAGAGGACCTATCTCGGTGTCGCTCCACCTGGCATCCTAGTGCATCAAGGGTTTGGACCCCAGTCAAACGTGGAGGAGCATCTAGTTCAAGCTCTGGAGCCAGCTCTTTGCCACTTTGTGGTCCCAGTTCCTCTTTgacctcttcctccctccactcATCTTCTAGCCCTACCTTCTTTAGCTTAGCTCTGTCCTCTGACTCCCCACTACCATGGAGCTTCTCGTGGGACCCCTGTGACAAATTGAAAGGAGCCTGTTCTGCCTCTTTTGTTACTCCTTCCTCTGGCTCCTCCTCACCAGCCCCCCTGGTGTCTCACTCAGTGCTGCAGCGCCGcttctccctctcccctgtGCACATTCAGGGTGCCTCCATGGTGCATCTGCCCCCCCAGCCCTCCCCTGCTTCTGCTCTGACATATGGCTGTTCTGGCATGGAACACCCAGCCCTGTCTCCATCTCCCACTTCAGCCTGCAGCACGCCATCCTCCTCTCGGCGCAACCTGCACCCAGCACTGCCGCGATGCCACTCGCAGCCCTGCGACATGCGCAAACCTCGCCTCAAGAGGCGCCATGACCCAGATGTTCTGCCCTGCCCCAGGCCAGGCCTTGACTTCAGCAAGATGACACAGATTGGTAATCACGAGAGCCTAATGTGTGGTAAAGGTGGCTCCATAGTTCCAGCGTCTTCCCAGGCAGAGCAGCGCTCTGCCTTTTCCCCTGCAGAGTTCCTGGGACGAGCCAGCATTGGGCCACTAAGTgaaagtgaagaagaagaagaagaggagcaagaagataaaagaaaaaggacTACAATAGATGAAGGGCAAAAGGTTATTTTTGAAAGAGACTGCACAGAACTGGACTTGAACCTTATAGAAGAAAACTGACCACTCCTTGATGCTCGAAGTGTGATTACTGCATTCATAACTATGTTAAGCACACCTGTAGGCTTTGTGCGCTCTTCTGGCAGAGTCCTTGGGAACCTGCTGCCCTCCTAAGGCACATATCCAGAGTTTATAATCAAGAACCAAGCAATTAGAAGCTAATATCAAATTACAATTTTATGATTGTAACATTTGTGCTAGTTCACTATTcaacatttcacaaaaatgtTACAGTGCCTGCCTACTCAACACTCCATAGGGAAATGTGCATGAACAAATAAGCTAGTCTTAATGCACACAGAATTTTGGTTATTTCATATTGATAATTCTTAATTTGCGTTAACCATTGGTATGGATCTTGATATCCATATCCTTTTCAAATAACATTGTATACTGGAGTAAGCAgaatgttttaatatttcttCATAATTGAATTGATTATACATGAAAAGCCAATAGATTTAATGCAATAGAGGTTGTAATAATAGAGGTATTCCTCATTGCCCAATCAGTACTAGTGTAGTCTACTTGTATTTGGGTCCCTGAATTTGGACATGACTGTATGTGAGCTGTTAAAGGTGCACACTGGTCAAAAATAATTGAGCAGCCCAAGTAACATAAGAATACTGATCTATATATAAATACTCTCATGTATGTTTAACTGAACAAATCCCAGGATTTCACTGCTGTTGCTTAAATCCCTCACAGACCCGAAAGACAAGTCTACTTTAACTGCTGTTCTGTCATTGATTCAGCTTGTCCGTTTTTGGAATAATTCTACGTCCTCAAAGGGAAATGTTCTTGTTATGGCAGAAAGGACAGCTCCccctttctgttttctttttttctagtaTTCTCAATTGCTTGAACATAAACAAACCTAGTCAACAATAATACTGATGATACTGTAAACTAACCATGCCTTAAGTTTAAAATACAGAGTTCTTGGTGCTCTGGTCTTCTTTTCACAGGCAGACATTTTTGCATTCTCCATTTGCGCTGATTCATATATTTTTGAACAGGTTGCACATGCACTATAATATTCAACTGAATAGCGGAATTGATGCTAAAACTGGACTCCTTATGGCAAAATGTAATGTACCATACTCTAGAGTGGTTAGAGTGAGTACACACTCAAACCAATGCTGAGTGTATGTGACAAAGGCGGTAGTGATGCAGATGATTTGGTGGCCTTTCAGAAATGATTTTTCATGTGTTTTCAGATGGAAATATTCCTGTTGCACAATTTATGTACAAATAAAGTTTAATAGagaatgata

Function

symbol description
fam53c Predicted to be involved in protein import into nucleus. Predicted to be active in nucleus. Orthologous to human FAM53C (family with sequence similarity 53 member C).

NR:

description
PREDICTED: protein FAM53C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814182.1 False 2755 mRNA 0.45 5 18382870 18389453
XM_039814183.1 True 2868 mRNA 0.45 5 18382870 18389361

Neighbor

gene id symbol gene type direction distance location
ctbp1 LOC107375331,LOC102204710,LOC101481404,LOC102780827,LOC100707048,LOC104922705,LOC103359200 coding downstream 490 18367171 ~ 18382380 (-)
spon2a LOC103359201,LOC104954676,LOC104922704 coding downstream 21212 18345393 ~ 18361658 (-)
kdm3b kdm3b coding downstream 39095 18315813 ~ 18343775 (-)
egr1 egr1 coding downstream 185455 18193217 ~ 18197415 (-)
LOC120566259 adra1b,LOC104967953 coding downstream 292404 18081204 ~ 18090466 (-)
LOC120567277 hnrnpab,LOC103359197 coding upstream 8975 18398428 ~ 18402180 (-)
nme5 nme5 coding upstream 13991 18403444 ~ 18408215 (-)
rack1 rack1 coding upstream 19096 18408549 ~ 18412476 (-)
col23a1a col23a1,LOC101473796,LOC107101682,LOC107375271,LOC102080853 coding upstream 25582 18415035 ~ 18538453 (-)
clk4a LOC103354367,LOC101475428 coding upstream 149948 18539401 ~ 18548715 (-)
G105835 NA non-coding downstream 347113 18035382 ~ 18035757 (-)
G105834 c1qtnf2,LOC103471225 non-coding downstream 347622 18033407 ~ 18035248 (-)
G105827 LOC108238064 non-coding downstream 358974 18022437 ~ 18023896 (-)
G105820 NA non-coding downstream 366943 18015451 ~ 18015927 (-)
G105806 atp7a non-coding downstream 402572 17978312 ~ 17980298 (-)
G105967 LOC100708117 non-coding upstream 160657 18550110 ~ 18551684 (-)
G106057 NA non-coding upstream 320589 18710042 ~ 18729032 (-)
G106066 NA non-coding upstream 609087 18998540 ~ 18999875 (-)
G106068 NA non-coding upstream 612319 19001772 ~ 19002114 (-)
G106073 NA non-coding upstream 657811 19047264 ~ 19047863 (-)
reep2 reep2,LOC102782871 other downstream 68455 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 314378 18067425 ~ 18068492 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other downstream 387520 17987196 ~ 17995350 (-)
LOC120566288 NA other downstream 523115 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 587479 17783560 ~ 17795391 (-)
LOC120566257 NA other upstream 298335 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 628299 19017752 ~ 19044951 (-)
LOC120566717 LOC102215832 other upstream 826536 19215989 ~ 19250436 (-)
tomm5 NA other upstream 1046386 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 1088477 19477930 ~ 19482625 (-)

Expression


Co-expression Network