nme5 (nme5)


Basic Information

Item Value
gene id nme5
gene name nme5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18403444 ~ 18408215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814191.1
CCGTAGATTTGTAATGGTATCCTAGCAACCCAAACAGACATCAGAGTGGGTTAAACGGCAGCAGAGCAGCTCTAGCTACGTTTTTATatttgtactaacgttacttaTTAAATTTACCGGCTAATGCTACACATAACGTTTAGTGTAACCCACTGTTAGTAATGTAACGTTAGAGCTAATTACTGTCGAACGTGAAGTTTAGTTGAAGAGACTCAAAACTATCGTAACattattagctagctagctaaatgctaCAAACGCTTGTGTTGCATGCCAGGGAAGATGGACCAAGCTTCTTATCCTCGCATCTATGTGGAAAGAACTCTGGCCCTTATTAAACCAGATGCCATCCACAAAGCTGAGGAGATTGAGGACGTTGTCCTCAAATCGGGCTTCATTATCCTGCAGAGGCGGAAGCTGCAGCTAAGTCCAGAGCAGTGCAGTGACTTCTACGCAGACCAATATGGAAAGCTTTTCTTTCCCAGCTTGACTGCCTTCATGAGCTCTGGCCCCATCATTGCCATGACTCTGGCCCGCGACAACGCCATCGCCCACTGGAAGTCCATCATAGGGCCTGTCAACAGCACCAAGGCCAGAGAAACTCATCCAGGGTGCCTTAGAGCAAAATATGGCACTTCTGACCTTAAAAACGCACTCCATGGCAGCGAGTCGTTTCATGCGGCTGAAAGGGAGATCAAATTCATGTTCCCAAACTCTGTAATCGAGCCTTTTCCCTCAAGAGAAGCAACGGCAGAATACCTGAGCAGGTATGTAAACCCAACTTTGCTACGTGGACTCACTGAGCTCTGCAAGTACAAGCCACACAATCCCTGTATTTGGCTTGCTGACTGGCTGATCAACAACAATCCAAACCAGCCTCAAATATGTGATGGAAGCATTCTGGAAGAAGCACAAtaacaacagacacaaaatgggGCCCAATACATAATTTCAGACGTTATTTTTTAGACAAATGTATGCGTTCCGTACTATGATTAAACAAAATGTCTTTTCAGCACTAA
>XM_039814192.1
TGACCTGTTTGAATTGCCGTAGATTTGTAATGGTATCCTAGCAACCCAAACAGACATCAGAGTGGGTTAAACGGCAGCAGAGCAGCTCTAGCTACGTTTTTATatttgtactaacgttacttaTTAAATTTACCGGCTAATGCTACACATAACGTTTAGTGTAACCCACTGTTAGTAATGTAACGTTAGAGCTAATTACTGTCGAACGTGAAGTTTAGTTGAAGAGACTCAAAACTATCGTAACattattagctagctagctaaatgctaCAAACGCTTGTGTTGCATGCCAGGGAAGATGGACCAAGCTTCTTATCCTCGCATCTATGTGGAAAGAACTCTGGCCCTTATTAAACCAGATGCCATCCACAAAGCTGAGGAGATTGAGGACGTTGTCCTCAAATCGGGCTTCATTATCCTGCAGAGGCGGAAGCTGCAGCTAAGTCCAGAGCAGTGCAGTGACTTCTACGCAGACCAATATGGAAAGCTTTTCTTTCCCAGCTTGACTGCCTTCATGAGCTCTGGCCCCATCATTGCCATGACTCTGGCCCGCGACAACGCCATCGCCCACTGGAAGTCCATCATAGGGCCTGTCAACAGCACCAAGGCCAGAGAAACTCATCCAGGGTGCCTTAGAGCAAAATATGGCACTTCTGACCTTAAAAACGCACTCCATGGCAGCGAGTCGTTTCATGCGGCTGAAAGGGAGATCAAATTCATGTTCCCAAACTCTGTAATCGAGCCTTTTCCCTCAAGAGAAGCAACGGCAGAATACCTGAGCAGATTTGGCTTGCTGACTGGCTGATCAACAACAATCCAAACCAGCCTCAAATATGTGATGGAAGCATTCTGGAAGAAGCACAAtaacaacagacacaaaatgggGCCCAATACATAATTTCAGACGTTATTTTTTAGACAAATGTATGCGTTCCGTACTATGATTAAACAAAATGTCTTTTCAGCACTAA

Function

symbol description
nme5 Predicted to enable nucleoside diphosphate kinase activity. Involved in cilium movement. Is expressed in Kupffer's vesicle; forerunner cell group; male organism; nervous system; and pleuroperitoneal region. Used to study primary ciliary dyskinesia. Orthologous to human NME5 (NME/NM23 family member 5).

NR:

description
nucleoside diphosphate kinase homolog 5 isoform X2

GO: NA

KEGG:

id description
K20790 NME5; nucleoside diphosphate kinase homolog 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814191.1 True 1022 mRNA 0.45 5 18403444 18408199
XM_039814192.1 False 971 mRNA 0.44 5 18403444 18408215

Neighbor

gene id symbol gene type direction distance location
LOC120567277 hnrnpab,LOC103359197 coding downstream 1264 18398428 ~ 18402180 (-)
LOC120567275 fam53c coding downstream 13991 18382870 ~ 18389453 (-)
ctbp1 LOC107375331,LOC102204710,LOC101481404,LOC102780827,LOC100707048,LOC104922705,LOC103359200 coding downstream 21064 18367171 ~ 18382380 (-)
spon2a LOC103359201,LOC104954676,LOC104922704 coding downstream 41786 18345393 ~ 18361658 (-)
kdm3b kdm3b coding downstream 59669 18315813 ~ 18343775 (-)
rack1 rack1 coding upstream 334 18408549 ~ 18412476 (-)
col23a1a col23a1,LOC101473796,LOC107101682,LOC107375271,LOC102080853 coding upstream 6820 18415035 ~ 18538453 (-)
clk4a LOC103354367,LOC101475428 coding upstream 131186 18539401 ~ 18548715 (-)
LOC120566508 rasgef1c coding upstream 145454 18553669 ~ 18606715 (-)
mapk9 mapk9 coding upstream 211918 18620133 ~ 18640808 (-)
G105835 NA non-coding downstream 367687 18035382 ~ 18035757 (-)
G105834 c1qtnf2,LOC103471225 non-coding downstream 368196 18033407 ~ 18035248 (-)
G105827 LOC108238064 non-coding downstream 379548 18022437 ~ 18023896 (-)
G105820 NA non-coding downstream 387517 18015451 ~ 18015927 (-)
G105806 atp7a non-coding downstream 423146 17978312 ~ 17980298 (-)
G105967 LOC100708117 non-coding upstream 141895 18550110 ~ 18551684 (-)
G106057 NA non-coding upstream 301827 18710042 ~ 18729032 (-)
G106066 NA non-coding upstream 590325 18998540 ~ 18999875 (-)
G106068 NA non-coding upstream 593557 19001772 ~ 19002114 (-)
G106073 NA non-coding upstream 639049 19047264 ~ 19047863 (-)
reep2 reep2,LOC102782871 other downstream 89029 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 334952 18067425 ~ 18068492 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other downstream 408094 17987196 ~ 17995350 (-)
LOC120566288 NA other downstream 543689 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 608053 17783560 ~ 17795391 (-)
LOC120566257 NA other upstream 279573 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 609537 19017752 ~ 19044951 (-)
LOC120566717 LOC102215832 other upstream 807774 19215989 ~ 19250436 (-)
tomm5 NA other upstream 1027624 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 1069715 19477930 ~ 19482625 (-)

Expression


Co-expression Network