gdf9 (gdf9)


Basic Information

Item Value
gene id gdf9
gene name gdf9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17860860 ~ 17864154 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814240.1
ATGGATGCAAGATACAGCATTGTTTAATTCAACTTAACCATGCTATCATTTAAAAATAGCCTCTTGCTGTTTTTGCTGACTGGGATATCGTGACTGAACAAGTCATAACTGGTCCCTTACCTGAGAAAGTAGCCTGGCCTATGAGTGATAGAGTTGATTGCCAACACCTGTGCATGTTGATGAGCGGCAGCACTTGCGTGGTCCTGTTTACCTCGAGCTCTCAGTGGAGATTCTCTCTAAGCTTAGTCTGGTTTCGTTGTTTATAATGGAAGAACAAATGCTGATGGCAGCTGCCCTTCGTTATATTCGCACAGTTTTCTTACTGCTGCTTGTCACCTGCAGCTCCCCGCTGGTTAGATCATCTCTGGCTGCCTCCAATGCGCTGAACAACCTGGATGACTTCACCTACCCTTATGGCAGTATCTTCTCCCCACTGCTCAAAGCCCTGTCGGAGCACGCAGGGTCGAGGTGGAACCCAGGACTGAAGAGAAAGATGAAACCCGACCACAGGTACATTAAATATCTGACGGAGGTTTACAAGAAGTCCTCCAGAGTGCAGAGGAGTTTGGACGGGAATAGGATCTACAACACAGTCCGACTGATAAAGCCACAAGATGAATGTCTTGCACAAAGTAATAAAGAGAGTTTTATGCAGGATCTTTCCTACAGCCTTGATCAAGTTAGAAGAAAAGAACAGCTTCTGAAGTTGGCCCTGCTGTATAATTTTGACCATGCAGCACCTATCAACTCTGTATGTTACCTGAGTCTCAAGGAACAGGAGCCTTCAAACCAGTGTCCGCTGTGTCCTGGGGTCCACAACGCTGTGAACTTCACAGTCAGGACAGACGAGCGGAGCAGGGGGAACTGGGTGGAGGTTGATGTCACCTCATTTCTCCAGCCTCTTTTAAAgtttcagaagaagaagaacataaACCTGCTAATCAATGTCACCTGCCCAGAGGAACAAAGAGCCAGTGGTGATGAGCGCAAAGGCCCACAGAAGTTCACCCTGAGGTCCCCTCCTCTGCTTCTTTATCTTGATGACACCAGCAAAATCAGCCACCAGAGGTTTCTGGTCAAAGCAGATCAAAGACCAGCCACTGAGGCAAACACATTTCACAAACCGATAGTTTTCAAACCAGAGCAGAGGACTGGGCGAATGAGAAGATGGAAAAGGGAATCTTCAAAGAGCAAACAAGGCGATAAAGGTCTTGATTTCCACCTGCCTGAGCTTCTTCCAAGCTCTGAATTCCAGACAAGCGACTGTGCCTTGTATGATTTCAGGGTGCGATTTAGCCAACTTAAACTGGATCACTGGATTGTTTTTCCACCAAAGTACAACCCCAGGTACTGCAGAGGCATCTGCCCGAGGACCATGGGCTTCATCTACGGCTCACCTGTGCACACCATGGTGCAAAACATCATCTATGAGAAGCTTGACTCCTCTGTGCCCAGGCCCTCGTGTATTCCCTCCCATTACAACCCCCTGAGTGTCATGATGTTTGAAGAGGATGGCTCCTATGTCTACAAGGAGTTTGAAGACATGGTTGCCACCAGGTGTACATGTCGCTAAGCCAGCTACCAACatgtctgttctttttttttcttctagctGAATAGAACATCACCACAAACCTCATCACAGGTGGACTCTATCCAAGTACTGGATATTCTGACCAGGTTCAGTGATTTCATGAATTTGTAAAATCGTTGTGCATGAAGTTTGATCTGGAGCAGGTGTGTTTACTTAAACAAAAAGTATTTTATCcctgtgaaaaatgtggaaggGTGACATTTATATCCTTTTTATGTTAAGGCGTGACAAGAAAGGGTGCCAATGCATCCTGTTCTAGAAACTTACTGTTTGCAACATAGTATTGATCTGACACACTTAAAGAAGAAAATTTGTGTTGTATgacttttgtatattttttttttttaagttaaattaaGAATGTGACTTTATGCATGTCatgtctatttaaaaaaaaaactaagaatgaattcactgtgtgtctgtgctcagCTTA

Function

symbol description
gdf9 Predicted to enable cytokine activity and type I activin receptor binding activity. Acts upstream of or within female sex determination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in fertilized egg; gonad; and immature gonad. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 14. Orthologous to human GDF9 (growth differentiation factor 9).

NR:

description
growth/differentiation factor 9

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814240.1 True 2030 mRNA 0.45 2 17860860 17864154

Neighbor

gene id symbol gene type direction distance location
hspa4b hspa4 coding downstream 4484 17847776 ~ 17856376 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding downstream 14306 17843883 ~ 17846554 (-)
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding downstream 17489 17834717 ~ 17843371 (-)
sh3rf2 LOC104943536 coding downstream 91593 17749663 ~ 17769267 (-)
atrx atrx coding downstream 137846 17679700 ~ 17723014 (-)
sowahab NA coding upstream 6048 17870202 ~ 17871569 (-)
fbxl3l NA coding upstream 95725 17959879 ~ 17968780 (-)
LOC120567416 LOC104938463,LOC103391208,LOC103359220,LOC100705713,LOC105026079 coding upstream 131821 17995975 ~ 18000829 (-)
LOC120566259 adra1b,LOC104967953 coding upstream 217050 18081204 ~ 18090466 (-)
egr1 egr1 coding upstream 329063 18193217 ~ 18197415 (-)
G105759 NA non-coding downstream 29712 17828622 ~ 17831148 (-)
G105749 NA non-coding downstream 104945 17755214 ~ 17755915 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 524908 17334404 ~ 17335952 (-)
G105598 NA non-coding downstream 535905 17324460 ~ 17324955 (-)
G105578 NA non-coding downstream 707267 17152171 ~ 17153593 (-)
G105768 NA non-coding upstream 10682 17874836 ~ 17876295 (-)
G105769 sept8 non-coding upstream 12878 17877032 ~ 17881994 (-)
G105784 gabrb2,LOC102788768 non-coding upstream 64678 17928832 ~ 17933470 (-)
G105806 atp7a non-coding upstream 114158 17978312 ~ 17980298 (-)
G105820 NA non-coding upstream 151297 18015451 ~ 18015927 (-)
LOC120566288 NA other downstream 1105 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 65469 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 112313 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 283049 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 603928 17166896 ~ 17256932 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 123042 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 203271 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 421804 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 823634 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 1153598 19017752 ~ 19044951 (-)

Expression


Co-expression Network