LOC120567329 (LOC107095807,LOC107379637,LOC102193053,LOC103355614,LOC108236668)


Basic Information

Item Value
gene id LOC120567329
gene name LOC107095807,LOC107379637,LOC102193053,LOC103355614,LOC108236668
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 29523571 ~ 29527992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814287.1
GCTGCGCGTTCTCGTTTCTGATTGGTCCGGACGTTAACTCCTTTACGGCTGCGCAccgcccctccctccctcttgtgCTGAAGGAACGAACATGGAGACAGCTGGAAAAGTCATTAAGTGCAAGGCAGCTGTTGCCTGGGAATCTGGGAAGCCTCTTTCCATTGAGGAGGTGGAGGTAGCCCCACCCAAGGCCCATGAAGTTCGCATCAAGATCTTTGCTACAGGGGTGTGTCATACAGATGCCTACACTCTAAGTGGCAGTGACCCCGAGGGACTTTTCCCTGTCATCTTGGGCCACGAGGGTGCTGGAACTGTGGAGAGCGTTGGTGAGGGTGTCACCAAGTTCAAGCCAGGTGATACTGTCGTCCCGTTGTATGTGCCACAGTGTGGTGAATGCAAATTCTGCAAAAATCCCAAGACCAACCTTTGCCAGAAAATTAGAGTAACCCAGGGCCGCGGCCTGCTCCCTGACAACACTTCACGCTTCACTTGCAAGGGAAAGCAAGTGTTTCACTTCATGGGGACCAGCACTTTTTCGGAGTATACTGTGGTGGCCGACATCTCTCTCGCCAAGGTGAACGCGAAGGCTCCACTGGATAAAGTGTGCCTTCTTGGTTGTGGCATTTCTACAGGTTACGGTGCTGCTCTCAACACTGCCAAGGTTGAGCCTGGTTCCACATGTGCTGTATTTGGCCTTGGTGCTGTTGGCTTGGCTGTTATTATGGGCTGCAAGGTTGCTGGGGCAACCAGGATCATTGGTGTGGACATCAACCCTGCAAAGTTTGAGAAAGCCAAGGAGTTTGGAGCCATTGAGTGTGTGAACCCTAAGGACCACAGCAAGCCCATCCAGGAGGTTCTGGTGGAGATGACTGACGGGGGTGTGGACTATTCATTTGAGTGCATTGGAAATGTGCAAATCATGaGAGCTGCTCTGGAGGCGTGCCATAAAGGATGGGGTGAAAGTGTCATCATCGGCGTAGCCGGAGCTGGACAGGAGATCTCGACCAGACCTTTCCAGCTGGTGACGGGCCGAGTGTGGAGGGGCACAGCCTTTGGAGGGTGGAAGAGTGTGGAAAGTGTTCCTAAATTGGTGGAAGACTACATGAATAAGAAGCTGAAGGTGGATGAGTTTGTGACCCACACCCTGCCCTTTGAGCAGATAAATGAGGGATTCGACCTCATGCATGCTGGAAAGAGTATCCGCACAGTGCTGACCTTCTGAAGTACCTGAAACATTGACATCCTTCACATTCGGCCTTTTAAACAATCTCCTTTCATAGTTGCAGCACTTAATGTATGTCTCTGCACTTGTTTTGATGACATAACTTTCAGTATTCGAACATTTGTATTAACAGCCCAGAAACAAAAGTGTCataaaaatattttgaaaatgaaa

Function

NR:

description
PREDICTED: alcohol dehydrogenase class-3

GO:

id name namespace
GO:0006069 ethanol oxidation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004022 alcohol dehydrogenase (NAD+) activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814287.1 True 1396 mRNA 0.50 9 29523571 29527992

Neighbor

gene id symbol gene type direction distance location
eif4ea LOC102291913,LOC100695556,LOC103355613,LOC102778934,LOC108236682 coding downstream 4308 29511696 ~ 29519263 (-)
lingo2 lingo2,LOC103356499 coding downstream 287972 28989623 ~ 29235599 (-)
LOC120566377 ctbp1,LOC100694320,LOC101482142 coding downstream 870364 28623299 ~ 28653207 (-)
spon2b spon2 coding downstream 931952 28583409 ~ 28591619 (-)
si:ch211-255i20.3 LOC104949360,LOC108236641,LOC104928618,LOC107379503 coding downstream 940284 28575742 ~ 28583287 (-)
gar1 gar1 coding upstream 350 29528342 ~ 29531658 (-)
egf egf coding upstream 253911 29781903 ~ 29808038 (-)
lrit3a lrit3,LOC100696521 coding upstream 283130 29811122 ~ 29818291 (-)
gpm6aa gpm6a,LOC103355621,LOC104917912 coding upstream 291797 29819789 ~ 29841438 (-)
spata4 NA coding upstream 319918 29847910 ~ 29852684 (-)
G108560 NA non-coding downstream 249617 29273594 ~ 29273954 (-)
LOC120567081 NA non-coding downstream 594666 28833175 ~ 28928905 (-)
G108524 LOC104954097 non-coding downstream 842472 28678279 ~ 28681099 (-)
LOC120566386 NA non-coding downstream 861339 28658024 ~ 28662232 (-)
G108476 NA non-coding downstream 965368 28556936 ~ 28558203 (-)
LOC120567321 NA non-coding upstream 25443 29553435 ~ 29750536 (-)
G108600 NA non-coding upstream 195832 29723824 ~ 29776421 (-)
G108702 NA non-coding upstream 747872 30275864 ~ 30282627 (-)
G108718 NA non-coding upstream 859529 30387521 ~ 30387854 (-)
G108722 NA non-coding upstream 874668 30402660 ~ 30403036 (-)
cxcl14 cxcl14 other downstream 715577 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 728063 28714863 ~ 28795508 (-)
LOC120566547 NA other downstream 1484871 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 1500342 28021737 ~ 28023229 (-)
LOC120566991 NA other downstream 1567877 27952256 ~ 27955694 (-)
gask1b fam198b,LOC102776406 other upstream 818986 30346978 ~ 30356856 (-)
G108777 rapgef2 other upstream 1132920 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 1141539 30669531 ~ 30670849 (-)
LOC120566409 limch1 other upstream 1857098 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 1891887 31419879 ~ 31485976 (-)

Expression


Co-expression Network