clp1 (clp1,LOC102795812)


Basic Information

Item Value
gene id clp1
gene name clp1,LOC102795812
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21284018 ~ 21287806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814349.1
CATGATTGGTTGTGGAGGGCGTGACTTCATTATCACGCGACCAGCAGGCAACATTcgagttttttttacagtctatggttgggaACCTATTTTTCATTCGACAGTAAGACTTGAAATTAGTCCTCATGGCAACAGAGGGTGCGGAAACGACGAGTGAAGATGTTCCGGTACCTGGGAAGGCCAGCACCAGGTTTGACCTGGAGAAGGAGACTGAACTTCGGTTTGAGGTGGAGGCAGGGGAAGCAGCAGAGCAAGTTGATCTAGAGCTCCTCACAGGAATGGCTGAGGTGTTTGGCTCGGAGCTGAACCGCAACAAAAAGTACACATTTGGACCAGGCTCCAAGATCGCAGTTTTCACCTGGCAAGGCTGCAGTGTGAATCTTTATGGGAAGCCAGAGGTGGCTTATGTGTCCAAGGATACTCCCATGCTGCTCTACCTGAACACACATGCTGCCCTGGAACAGATGAGAAAACAAGCAGAGCGGGACAATGAGAGGGGGCCGAGGGTGATGGTGGTGGGACCTACAGATGTGGGGAAATCAACAGTGTGCCGGCTACTATTAAGCTATGCTGTAAGGGTGGGCCGGAGGCCAACGCTGGTGGAACTGGATGTTGGACAGAGTGGGGTGTCCGTACCTGGGACAGTGTCGGCACTGTGCATTGAGCGCCCGGCAGACGTGGAGGAGGGTTTTTCAGTCCAGGCTCCTTTGGTCTACCACTTTGGCTCTACTACACCAGGGACCAACATcaaactttacaataagCTGACGTCGTGCCTGGCCGATGTGTTTTCCCAGCGCTGTGAGGTGAACAGAAAGGCTAGCGTGGGAGGCTGTATCATCAACACCTGCGGCTGGGTGAAGGGCTCTGGATACCAGGCTCTGGTCCACTGTGCCTCTGCCTTCGAGGTGGATGTGGTGCTGGTGCTGGACCATGAGAGGCTCTACAATGAACTCAAACGAGACCTCCCTCACTTTGTACGGGTTGTGCTCCTACCCAAGTCTGGAGGGGTGGTAGAGCGCTCCAAGGAGTGCAGGCGGGATACTCGTGATGAGAAGATCCGTGAGTATTTCTATGGCTTTCGTGGCGTGACCTTCTATCCGTTTTCCTATGAGGTGCGTTTCTCAGATGTCCGCATCTACAAGATCGGAGCACCATCCATCCCAGACTCGTGCTTGCCACTGGGAATGTCTCAGGATGACACACAGCTAAAGCTGGTGCCTGTGACACCAGGCAGAGACCTCACGTATCATGTGCTTAGTGTGAGCAGTGCTGAGGACGGAGAGGAAGGTGCTAGAAAGGGTATAGTAGAAAGCCCTGTGTGTGGCTTTATTGTGGTGACTAATGTGGACACCCAAGCACAGGTAATGAAAGTGCTGTCCCCAGCACCCAGACCACTGCCCAGACACACTCTACTTATCATGGACATCCGCTTCATGGACATGAAATGAATTAACATTTCAGGGAGGAAGACTCTGTTGCAAAAGAAGTGGGGATCATGTTTGGAAGAATTTAGTTTCCTAATTGTTTCTTTGTACCTTATAGGGACTACAGATggcaaaagagaaaaagattCAAGTATGGAATTTGGTAGCTGCTGTAAATTTAAACCCCATTTTATAGACCACACTGTACAGATGTTTTTATCAGTCCAGGAATTAAATTCTTGATAATCTGTTTTATGAACATTGTTTTTCTCATAagtaataaatgttttaaatttacaAA

Function

symbol description
clp1 Enables polyribonucleotide 5'-hydroxyl-kinase activity. Acts upstream of or within brain development and spinal cord motor neuron differentiation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage factor complex and tRNA-intron endonuclease complex. Is expressed in brain and motor neurons. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 10. Orthologous to human CLP1 (cleavage factor polyribonucleotide kinase subunit 1).

NR:

description
PREDICTED: polyribonucleotide 5'-hydroxyl-kinase Clp1

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0035087 siRNA loading onto RISC involved in RNA interference biological_process
GO:0031124 mRNA 3'-end processing biological_process
GO:0016310 phosphorylation biological_process
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0000214 tRNA-intron endonuclease complex cellular_component
GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046404 ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity molecular_function

KEGG:

id description
K14399 CLP1, HERB; polyribonucleotide 5'-hydroxyl-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814349.1 True 1728 mRNA 0.49 6 21284018 21287806

Neighbor

gene id symbol gene type direction distance location
rtn4rl2b LOC104945075,LOC103358608 coding upstream 12887 21264992 ~ 21271131 (+)
slc43a3b slc43a3 coding upstream 24972 21242454 ~ 21259046 (+)
LOC120566636 LOC104961169,LOC103354768,LOC101069382 coding upstream 101468 21179991 ~ 21182550 (+)
cabp2b cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131 coding upstream 110247 21158895 ~ 21173771 (+)
LOC120566628 LOC104961166,LOC103390920,LOC102076832,LOC103354772 coding upstream 129190 21146681 ~ 21154828 (+)
si:dkey-6i22.5 NA coding downstream 20286 21308092 ~ 21310959 (+)
med19a med19 coding downstream 23231 21311037 ~ 21314140 (+)
ssrp1a ssrp1 coding downstream 94921 21382727 ~ 21401180 (+)
p2rx3a p2rx3 coding downstream 119079 21406885 ~ 21415624 (+)
rad9a rad9a coding downstream 135246 21423052 ~ 21429502 (+)
G106712 LOC103354767 non-coding upstream 78642 21204689 ~ 21205376 (+)
G106709 ctnnd1 non-coding upstream 81848 21196804 ~ 21202170 (+)
G106708 NA non-coding upstream 87364 21196179 ~ 21196654 (+)
G106707 NA non-coding upstream 89169 21193066 ~ 21194849 (+)
G106684 NA non-coding upstream 175659 21107498 ~ 21108359 (+)
G106851 NA non-coding downstream 159076 21446882 ~ 21447096 (+)
G106972 NA non-coding downstream 473192 21760998 ~ 21761444 (+)
G106975 NA non-coding downstream 475561 21763367 ~ 21763641 (+)
G106992 NA non-coding downstream 555856 21843662 ~ 21843950 (+)
G107025 LOC104954424,LOC103390732 non-coding downstream 1043206 22331012 ~ 22378340 (+)
selenoh selenoh other upstream 789 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 336603 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 931851 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 1222680 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 1631544 19604840 ~ 19652474 (+)
zdhhc5b zdhhc5 other downstream 1725 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 160994 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1574384 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1615949 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 1662789 22950595 ~ 22997038 (+)

Expression


Co-expression Network