ran (ran)


Basic Information

Item Value
gene id ran
gene name ran
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21443557 ~ 21446726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814387.1
AATCAAATGCGTTTTACCGCTGCGGTGATCACATGATATGGGCGGAAACTGACTCATAGTCCACGCTGAATCTCCCGCGAACGCAGCCATttacctcttttctctcttggCAGTGACACCGATAAATCGCAACCACGGCGGACTCAATGGCACAGTGTGTACCGGTGGCGGTGTTCAAGCTTGTCTTGGTAGGAGATGGAGGCACCGGGAAAACGACTTTTGTGAAGAGGCACATTACAGGAGAGTTTGAGAAGAAATATGTTGCTACTCTGGGAGTAGAGGTCCACCCACTGATGTTCCACACTAACAGAGGACCTATCAAGTACAATGTGTGGGACACTGCTGGTCAGGAGAAGTTTGGAGGCCTGAGAGATGGCTACTACATTCAAGCTCAATGTGCTATCATCATGTTTGACGTCACCTCTCGAGTCACCTATAAGAACGTGCCAAACTGGCATCGTGACCTGGTCCGTGTCTGTGAGAACATTCCAATTGTCCTGTGCGGCAACAAGGTGGACATCAAAGACAGGAAAGTCAAAGCCAAGAGCATTGTGTTTCACCGCAAGAAGAACCTGCAGTACTATGACATTTCTGCCAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTGGCTAGCAAGGAAGTTAATCGGCGATCCCAACCTGGAGTTTGTGGCAATGCCTGCTCTCGCTCCCCCAGAGGTTCAAATGGACCCGAACCTTGCTGCGAAGTACGAGGAAGAGCTTCAAGTTGCATCGCAAACAGCACTCCCAGATGAAGAAGATGACCTCTAACCTGTTACCTGAATTTACCCTCTCGTACCCCCAAATGTGGACAGGAAGTTGTTGGATTTTTGCCCCCCGTTTACTGTAAAATCCCtttcagattttttatttttgaatttttgtttgttttaaaactaGGTAAAAACTTGGTGAAAAAGTTGTGGTTCTAATTTCACTGTATCGGACACACCCACCCTAGTGTTGTCATTGGCATGGCAACGTGCTACTCTTCATCATCGAGCACCCTCCACTGCACTCCAGCTCACATAATGCTGTTGTACGGTGCACTGGAAGCACTAAGGGGAGAAACTTTGAATAAATACATTCTCAATACAA
>XM_039814388.1
TTCCATGCTGTGCTAGCTAACAGATAAATCGCAACCACGGCGGACTCAATGGCACAGTGTGTACCGGTGGCGGTGTTCAAGCTTGTCTTGGTAGGAGATGGAGGCACCGGGAAAACGACTTTTGTGAAGAGGCACATTACAGGAGAGTTTGAGAAGAAATATGTTGCTACTCTGGGAGTAGAGGTCCACCCACTGATGTTCCACACTAACAGAGGACCTATCAAGTACAATGTGTGGGACACTGCTGGTCAGGAGAAGTTTGGAGGCCTGAGAGATGGCTACTACATTCAAGCTCAATGTGCTATCATCATGTTTGACGTCACCTCTCGAGTCACCTATAAGAACGTGCCAAACTGGCATCGTGACCTGGTCCGTGTCTGTGAGAACATTCCAATTGTCCTGTGCGGCAACAAGGTGGACATCAAAGACAGGAAAGTCAAAGCCAAGAGCATTGTGTTTCACCGCAAGAAGAACCTGCAGTACTATGACATTTCTGCCAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTGGCTAGCAAGGAAGTTAATCGGCGATCCCAACCTGGAGTTTGTGGCAATGCCTGCTCTCGCTCCCCCAGAGGTTCAAATGGACCCGAACCTTGCTGCGAAGTACGAGGAAGAGCTTCAAGTTGCATCGCAAACAGCACTCCCAGATGAAGAAGATGACCTCTAACCTGTTACCTGAATTTACCCTCTCGTACCCCCAAATGTGGACAGGAAGTTGTTGGATTTTTGCCCCCCGTTTACTGTAAAATCCCtttcagattttttatttttgaatttttgtttgttttaaaactaGGTAAAAACTTGGTGAAAAAGTTGTGGTTCTAATTTCACTGTATCGGACACACCCACCCTAGTGTTGTCATTGGCATGGCAACGTGCTACTCTTCATCATCGAGCACCCTCCACTGCACTCCAGCTCACATAATGCTGTTGTACGGTGCACTGGAAGCACTAAGGGGAGAAACTTTGAATAAATACATTCTCAATACAA

Function

symbol description
ran Predicted to enable GTP binding activity; GTPase activity; and magnesium ion binding activity. Acts upstream of or within neural retina development. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; eye; pronephros; and splanchnocranium. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07936 RAN; GTP-binding nuclear protein Ran

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814387.1 True 1121 mRNA 0.47 7 21443557 21446726
XM_039814388.1 False 1023 mRNA 0.46 7 21443887 21446726

Neighbor

gene id symbol gene type direction distance location
ndufs8b ndufs8,LOC102288815,LOC100707179,LOC101466861 coding upstream 669 21438251 ~ 21442888 (+)
rad9a rad9a coding upstream 14055 21423052 ~ 21429502 (+)
p2rx3a p2rx3 coding upstream 27933 21406885 ~ 21415624 (+)
ssrp1a ssrp1 coding upstream 42377 21382727 ~ 21401180 (+)
med19a med19 coding upstream 129417 21311037 ~ 21314140 (+)
kdm2ab NA coding downstream 22357 21469083 ~ 21485421 (+)
ankrd13d ankrd13d coding downstream 38907 21485633 ~ 21494051 (+)
LOC120566710 NA coding downstream 64681 21511407 ~ 21517692 (+)
LOC120566709 LOC104958698,LOC101067481,LOC103391036,LOC108243082 coding downstream 71404 21518130 ~ 21531269 (+)
LOC120567432 LOC102311101,LOC102216180,LOC101470192,LOC107374508 coding downstream 98265 21544991 ~ 21562298 (+)
G106712 LOC103354767 non-coding upstream 238181 21204689 ~ 21205376 (+)
G106709 ctnnd1 non-coding upstream 241387 21196804 ~ 21202170 (+)
G106708 NA non-coding upstream 246903 21196179 ~ 21196654 (+)
G106707 NA non-coding upstream 248708 21193066 ~ 21194849 (+)
G106684 NA non-coding upstream 335198 21107498 ~ 21108359 (+)
G106851 NA non-coding downstream 156 21446882 ~ 21447096 (+)
G106972 NA non-coding downstream 314272 21760998 ~ 21761444 (+)
G106975 NA non-coding downstream 316641 21763367 ~ 21763641 (+)
G106992 NA non-coding downstream 396936 21843662 ~ 21843950 (+)
G107025 LOC104954424,LOC103390732 non-coding downstream 884286 22331012 ~ 22378340 (+)
zdhhc5b zdhhc5 other upstream 92579 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 160328 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 496142 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 1091390 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 1382219 20028863 ~ 20061338 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 2074 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1415464 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1457029 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 1503869 22950595 ~ 22997038 (+)
G107168 NA other downstream 1508246 22954972 ~ 22973761 (+)

Expression


Co-expression Network