LOC120567467 (tlx3,LOC102778180,LOC103390932,LOC104948897)


Basic Information

Item Value
gene id LOC120567467
gene name tlx3,LOC102778180,LOC103390932,LOC104948897
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20958750 ~ 20962480 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814442.1
GGGCTATACCCCCATTAACATTCAATCAGTCATTCCGGTGCCAGCCAATGAATGGtggagagggatggaggaggaCGGAGCTGCTAGACTGAGCGTTTTGACGCGCTGAGAGGAGGACAGAGCGTCGCATCTCTCCAAACGCCCATCAAACTTTCACCACAGCATGTAGAGAGGACCCAGTCCTCTGAAAGAGGCCTGTTAGAGACAACAAGGACACGCTGGATTCTGGGCAGACGGCTGGACAGCGATGGAGACACTACTGGCAATTACTTTTGGTACAGTTTGACCCTGCTGCGATTCCCCCTGAAAACATCTTGTTCATTTTTTTCGTCCTTTTTGCGACAGATCGACAGGAATGGAGCAAGCACCCAGCGCGCCGAGCCCTCCACCAAAACCAGCCCATCACGAGCCCATTAGCTTCGGCATCGACCAGATCCTGGGAGCTGGTACAGAGCCAGAAAACGGGCGCGCGTCTGGAAGACAAAGTGGATCCGATTTAAGCAACGGGGACGGTTATTACAGTTTAGGAAGCCCGACCGGGGCAAGCGCGCCCTCATACACCGCGCTGTCTATCTCCCTCTCCGGTATAATGCCTCCGGTGGAGGCGTCAGGTTCATATGGGGAGAGCAGGAGTCTGGGAAGCCGGGGAGTAATTCGAGTCCCGGCCCACAGACCCATGACAGCGCCGGGACCCCCGGCCCCCGTCCAGAGCGCTGTCCCTGGGTTTGGAGGGCTGTGCTTCCCCTGGATAGGAAACAGGTTCGCCAAGGACAGAATATCAGCAGCTCTGGTGCCGTTCGCCGTTACGCGGCGGATAGGACACCCGTACCAGAACCGGACACCGCCCAAACGGAAAAAGCCCCGCACGTCCTTCTCCAGAGTTCAGATCTGCGAGCTGGAGAAGCGCTTCCACCGGCAGAAGTACCTGGCCAGCGCCGAGCGGGCAGCCCTGGCCAAGAGTCTGAAAATGACAGACGCACAGGTCAAAACCTGGTTCCAGAACCGCAGGACCAAGTGGAGgagacagacagccgAGGAGAGGGAGGCGGAGCGTCAACAGGCCAATCGCCTcatcctgcagctgcagcagtccGCCCTCCAGAAGTCCCTCAGCGAATCAGCGGTGTCGGATCCACTGTGCGCGCATAACTCCTCCCTGTATGCCCTGCAGAACCTCCAACCCTGGGCCGAGGAGAGGGAATAGAGACCAGCCACCACGCTGTAATCAATAAGCATCATCTAATATCCCTGGGAGGATACATACATTAAATTAGGCCTACATGAGGACAGTGGGACTTACTTTGATCCATgcaatggataaaaaaaaaaaatgttggaccAGGTAAACTGAAGAATGGGTCACAGGCAGCCATTTGATTGGACGGTTGTGAAAATGGACCTGTGGGTGAGTGATGCCTGTTCTGAAAGATAAACAGAACTTTCTTGGAATAAATCTTGCAAGTCTGTACTGGGAACCGTGAGacttttttaaatccaaaaaggaAACAATACTTGTCATTCAAAATTCTCGTGACCCTGTAATACTGTAATGTACTTATTCTGTTCATAAGAATAAGATAATTTACCCCATAGACTTGAAGGAGGCAATTCATTCTCCCCAGTAAGACACGATTAAGTGTTTTCTGAAGCTCTTGCTCTCAACAACCAACTCCTTATTCTGCAACACTTTGAAAGGGTTGGCTCTGTATTTTTAGGGGAAGAACACCAGCCATATAAAGGCAAGGCCTACACCCCAACACATATACAATAGAGTACTTGCATAAAAATGTGTCTGAGTTTTAAATAAATCTCCTGCTATTTtatcaaaatacacaaaaagatGTCTTCACGAAAATGCAGATAAAAGCGggttcagaattttttttttattgtactgGTGCTTAAGCGTTCTTCCGatctcatttataaatgtacCCACTTCAACTACAATGCACCACCACATCCACCTATACATACACAGGTGTGGTGCACCAACTTAGCCCAAGAAAATTATGCCTAAAATGTTACATTATGGGGAAGAAATGCTTTTGTGCAAAGTAATAAAAGGAAAATAGATGTCAGGataag
>XM_039814443.1
ATTGTGGGCTATACCCCCATTAACATTCAATCAGTCATTCCGGTGCCAGCCAATGAATGGtggagagggatggaggaggaCGGAGCTGCTAGACTGAGCGTTTTGACGCGCTGAGAGGAGGACAGAGCGTCGCATCTCTCCAAACGCCCATCAAACTTTCACCACAGCATGTAGAGAGGACCCAGTCCTCTGAAAGAGGCCTGTTAGAGACAACAAGGACACGCTGGATTCTGGGCAGACGGCTGGACAGCGATGGAGACACTACTGGCAATTACTTTTGGTACAGTTTGACCCTGCTGCGATTCCCCCTGAAAACATCTTGTTCATTTTTTTCGTCCTTTTTGCGACAGATCGACAGGAATGGAGCAAGCACCCAGCGCGCCGAGCCCTCCACCAAAACCAGCCCATCACGAGCCCATTAGCTTCGGCATCGACCAGATCCTGGGAGCTGGTACAGAGCCAGAAAACGGGCGCGCGTCTGGAAGACAAAGTGGATCCGATTTAAGCAACGGGGACGGTTATTACAGTTTAGGAAGCCCGACCGGGGCAAGCGCGCCCTCATACACCGCGCTGTCTATCTCCCTCTCCGGTATAATGCCTCCGGTGGAGGCGTCAGGTTCATATGGGGAGAGCAGGAGTCTGGGAAGCCGGGGAGTAATTCGAGTCCCGGCCCACAGACCCATGACAGCGCCGGGACCCCCGGCCCCCGTCCAGAGCGCTGTCCCTGGGTTTGGAGGGCTGTGCTTCCCCTGGATAGGAAACAGGTTCGCCAAGGACAGAATATCAGCTCTGGTGCCGTTCGCCGTTACGCGGCGGATAGGACACCCGTACCAGAACCGGACACCGCCCAAACGGAAAAAGCCCCGCACGTCCTTCTCCAGAGTTCAGATCTGCGAGCTGGAGAAGCGCTTCCACCGGCAGAAGTACCTGGCCAGCGCCGAGCGGGCAGCCCTGGCCAAGAGTCTGAAAATGACAGACGCACAGGTCAAAACCTGGTTCCAGAACCGCAGGACCAAGTGGAGgagacagacagccgAGGAGAGGGAGGCGGAGCGTCAACAGGCCAATCGCCTcatcctgcagctgcagcagtccGCCCTCCAGAAGTCCCTCAGCGAATCAGCGGTGTCGGATCCACTGTGCGCGCATAACTCCTCCCTGTATGCCCTGCAGAACCTCCAACCCTGGGCCGAGGAGAGGGAATAGAGACCAGCCACCACGCTGTAATCAATAAGCATCATCTAATATCCCTGGGAGGATACATACATTAAATTAGGCCTACATGAGGACAGTGGGACTTACTTTGATCCATgcaatggataaaaaaaaaaaatgttggaccAGGTAAACTGAAGAATGGGTCACAGGCAGCCATTTGATTGGACGGTTGTGAAAATGGACCTGTGGGTGAGTGATGCCTGTTCTGAAAGATAAACAGAACTTTCTTGGAATAAATCTTGCAAGTCTGTACTGGGAACCGTGAGacttttttaaatccaaaaaggaAACAATACTTGTCATTCAAAATTCTCGTGACCCTGTAATACTGTAATGTACTTATTCTGTTCATAAGAATAAGATAATTTACCCCATAGACTTGAAGGAGGCAATTCATTCTCCCCAGTAAGACACGATTAAGTGTTTTCTGAAGCTCTTGCTCTCAACAACCAACTCCTTATTCTGCAACACTTTGAAAGGGTTGGCTCTGTATTTTTAGGGGAAGAACACCAGCCATATAAAGGCAAGGCCTACACCCCAACACATATACAATAGAGTACTTGCATAAAAATGTGTCTGAGTTTTAAATAAATCTCCTGCTATTTtatcaaaatacacaaaaagatGTCTTCACGAAAATGCAGATAAAAGCGggttcagaattttttttttattgtactgGTGCTTAAGCGTTCTTCCGatctcatttataaatgtacCCACTTCAACTACAATGCACCACCACATCCACCTATACATACACAGGTGTGGTGCACCAACTTAGCCCAAGAAAATTATGCCTAAAATGTTACATTATGGGGAAGAAATGCTTTTGTGCAAAGTAATAAAAGGAAAATAGATGTCAGGataag

Function

symbol description
tlx3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including nervous system development; regulation of respiratory gaseous exchange by nervous system process; and respiratory gaseous exchange by respiratory system. Located in nucleoplasm.

NR:

description
T-cell leukemia homeobox protein 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814442.1 False 2088 mRNA 0.50 3 20958755 20962480
XM_039814443.1 True 2090 mRNA 0.50 3 20958750 20962480

Neighbor

gene id symbol gene type direction distance location
LOC120567465 fam196b,LOC106941975 coding upstream 93736 20842597 ~ 20865014 (+)
LOC120567191 LOC103471737,LOC101080210,LOC107376386,LOC106924627,LOC106950266,LOC108243066,LOC103390860,LOC103374828 coding upstream 404138 20284609 ~ 20554612 (+)
LOC120567195 LOC108243068,LOC106924634 coding upstream 429092 20526783 ~ 20529658 (+)
LOC120567199 pcdhgc5 coding upstream 439377 20516645 ~ 20519373 (+)
LOC120567215 LOC101080210 coding upstream 449263 20497855 ~ 20509487 (+)
LOC120567251 NA coding downstream 97525 21060005 ~ 21067720 (+)
si:dkeyp-121d2.7 LOC103354771 coding downstream 169735 21132215 ~ 21136447 (+)
LOC120566628 LOC104961166,LOC103390920,LOC102076832,LOC103354772 coding downstream 184201 21146681 ~ 21154828 (+)
cabp2b cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131 coding downstream 196415 21158895 ~ 21173771 (+)
LOC120566636 LOC104961169,LOC103354768,LOC101069382 coding downstream 217511 21179991 ~ 21182550 (+)
G106577 NA non-coding upstream 227077 20710509 ~ 20731673 (+)
LOC120567249 NA non-coding upstream 682839 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 959949 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 1003787 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 1017035 19940938 ~ 19941715 (+)
G106679 NA non-coding downstream 138004 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 145018 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 230586 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 233699 21196179 ~ 21196654 (+)
G106709 ctnnd1 non-coding downstream 234324 21196804 ~ 21202170 (+)
hrh2a LOC103354784,LOC104948895 other upstream 11335 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 606583 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 897412 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 1306276 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1988804 18963934 ~ 18969946 (+)
selenoh selenoh other downstream 317207 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 327051 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 486320 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1899710 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1941275 22903755 ~ 22909562 (+)

Expression


Co-expression Network