pfdn6 (pfdn6)


Basic Information

Item Value
gene id pfdn6
gene name pfdn6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2854830 ~ 2859046 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814456.1
CGGCATTCGGCTAACATCCGCTCTGGCCCCTGCCCTTTCCTGTTAGCTAACAGAGCTTTCATCTTATACCATATTTAGCAGCTTAACGTTATCTCTTTGATATATTTACGCAGTCTAtcgtacttttttttttagaccaaaCACAAATATGGCAGAGGCCATTCAAAAGAAATTGAAAGCGGAAGTAGAAAAATATACACAGATGCAGAAAGATGTTAGCAAGAACATGTCAGCCAGACAGAAGCTGGAGACGCAGCTGACAGAGAACAACATTGTCAAAGAGgAGCTTGATCTGCTGGGCAGCACGAACACTGTGTATAAGCTTATCGGCCCAGTATTAGTGAAGCAAGACCTGGATGAGGCCAAAGCCACAGTCACAAAAAGGCTGGAGTACATCAACGGAGAGATTCAAAGGTACGAAACGGTCCTGAAAGACATGGAGAAGAAATCTGAACAGCATCGAGAAGTCTTGTCCAGTTTACAGCAGGAGTTTCAGAGAGCTCAGGGCCTGGCTGTCGGCAAAGTCTGACCAAGGGATCCAGCttcatgctctctctctctctctctctctctcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatacagatacagataaagGGTTAGTCATGACATGATGTAAACCTTCAACATAAGGCTGAGTAAATTCTGCTTGTATCTTGTCATTCATTTGTTATTACAGTGACTCTTCCCCTGTTACTAATAAACCTGTTTTTCATGAAAGGTCAAA

Function

symbol description
pfdn6 Predicted to enable chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN6 (prefoldin subunit 6).

NR:

description
prefoldin subunit 6

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04798 pfdB, PFDN6; prefoldin beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814456.1 True 814 mRNA 0.44 4 2854830 2859046

Neighbor

gene id symbol gene type direction distance location
her11 NA coding downstream 10131 2843087 ~ 2844699 (-)
micu3b micu3,LOC104941480,LOC104920617 coding downstream 38628 2796249 ~ 2816202 (-)
zdhhc2 zdhhc2 coding downstream 61157 2775405 ~ 2793673 (-)
pdgfrl pdgfrl,LOC100690066,LOC101468828 coding downstream 134803 2714174 ~ 2720027 (-)
polr1d polr1d,LOC104920592,LOC104965767,LOC103366847 coding downstream 181627 2664227 ~ 2673203 (-)
ints6l LOC103357573,LOC100710804,LOC102788097,LOC101475885 coding upstream 6793 2865839 ~ 2884095 (-)
hprt1 hprt1,LOC102225914,LOC107082363 coding upstream 40305 2899351 ~ 2909040 (-)
phf6 phf6,LOC102789831 coding upstream 52569 2911615 ~ 2924773 (-)
LOC120567109 NA coding upstream 296647 3155693 ~ 3157527 (-)
sting1 tmem173 coding upstream 305150 3164196 ~ 3178567 (-)
G102941 NA non-coding downstream 64006 2790526 ~ 2790824 (-)
G102923 mtus1 non-coding downstream 143391 2709027 ~ 2711439 (-)
G102916 NA non-coding downstream 160216 2694352 ~ 2694614 (-)
G102915 NA non-coding downstream 161275 2690831 ~ 2693555 (-)
G102914 NA non-coding downstream 164267 2688009 ~ 2690563 (-)
G103059 NA non-coding upstream 80100 2939146 ~ 2940797 (-)
G103067 NA non-coding upstream 101325 2960371 ~ 2961386 (-)
G103096 LOC106586057 non-coding upstream 262633 3121679 ~ 3125337 (-)
G103097 NA non-coding upstream 273105 3132151 ~ 3191381 (-)
G103085 NA non-coding upstream 308606 3167652 ~ 3246583 (-)
slc7a2 slc7a2,LOC102301583 other downstream 114343 2725460 ~ 2740487 (-)
sh2d1aa sh2d1a,LOC102800107 other downstream 656912 2176867 ~ 2197918 (-)
insb LOC101469513,LOC102789752 other downstream 2013212 838946 ~ 841618 (-)
tmsb2 NA other downstream 2386380 466290 ~ 468450 (-)
G102276 NA other downstream 2623386 220592 ~ 231444 (-)
pabir2 LOC104944540,LOC105929195,LOC106528854 other upstream 31924 2890970 ~ 2898545 (-)
LOC120567496 NA other upstream 37125 2896171 ~ 2896313 (-)
guf1 guf1,LOC102797887 other upstream 765113 3624159 ~ 3642640 (-)
G103268 NA other upstream 1043945 3902991 ~ 3925309 (-)
smim19 smim19 other upstream 1069884 3928930 ~ 3933220 (-)

Expression


Co-expression Network