lrit3a (lrit3,LOC100696521)


Basic Information

Item Value
gene id lrit3a
gene name lrit3,LOC100696521
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 29811122 ~ 29818291 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814482.1
ACCCTCCCCCACACTGTCAATCTGACAGGTGAGCTGTACTGCAATTGAATCCTCAGCCTGTTTACCGTTGCCTCCTATGGACATTGAAAGCTCTTTTCATTGTTCTCcatttgtttgtatgtttttttaagaataatTCTTCAGCCTCTCACTGAATCTGGATGTCTTTTTTCATGATCTCTTCTCAATGTGAGAACTGTGGGTGCATTTGGTGAAACCATGCGTCGACTTCTCTTTGTGCATGTATTCCTGTGCTGCCTCAGTATGGCTCATCCCTTCTGTCCATCCCAGTGCACCTGTGTCTTCCATGGTCGAACCGATGGAGCAGGAAGCAGGTCTGTGGTCTGCAATGATCCAGACATGTCTGATATCCCTGTCAACGTCCCTGTGGATACGGTCAAACTTCGTATTGAGAAAACCATGGTACGGCGAATCCCAACAGAAGCTTTTTACTACCTGGTGGACCTACGGTACCTGTGGATTACTTACAATTCCATAAGCTCAGTGGATAGTGCAAGTTTCTACAACCTCAAAGTGCTCCACGAGTTGAGGCTGGATGGAAATATGATCTCAGTGTTCCCTTGGGAGTCTCTGAAAGAGATGCCCAGGCTGAAGACACTGGATCTACACAACAACAGAATCACTCATGTTCCCACTGAAGCAATACCCTACCTCCTCAACATTACCTACTTGGATCTATCCAGCAACAAATTAGCCACTCTGCCCTCAGATTTCATGGATATCTGGCCACCCTTCAATGGAGCACCCATCTCCACTAATGCCTCCCAGAAAGTTTTGTTAGGCCTCCAAGATAACCCCTGGTTCTGTGACTGTAAAATATCCAAGCTGATTGAGCTTTCCAAAATGTCTGGCACACCAGTGGTTTTGATGGACCTATACATGGCCTGCAGTGGACCAGAGAATATGGCTGGTGTCCTTTTTCAGCGTGCTGAACTTGACAACTGTGTAAAACCATCAGTCATGACTTCGGCAACTAAGATCACATCTGATTTGGGCAGTAATGTCCTCCTGCGATGTGACGCCACAGGGTTTCCAACACCAACTCTTTACTGGGCTAAGTCAGATGGCTCACTAGTCAACAACACAGTCCAGGAGTCACCTGGAGACGGCATCAGATGGTCCATCATGAGCTTGTATGGAATATTGTTCAAAGACGCCGGGAACTACAGTTGCAAAGCTAAGAATGATGCTGGAAATGCAGAAGCAACCATTACTCTCTCGGTTGCTGGTGCTACAAGTACCACCATCCTTCCACTGAGGCCTGACAAAACTGAACCAACTAGCCAAGGCACAACATTTACTCCTCCAACATACACTCCAAACTCACCCACCATCACATCCACAGTTCTTCCAAGAACATCAACAACATCTGCTGTCCCTAAGAAGCCGAAAACTACGACCAGCAACAGTTTACTGAAAGGCTCAATCAAACCAGCAAAATCCCAGCAAGGAGCTAATGGGAGAAAGCTTGCAGCAGATGAAAAGAGCAAGAAAAGTGATGCATCAAAGTCTGTCAAAGACCTTAAGATTGTAGAGGAAACATCTGACACTGCAGTATTGCTCTGGACAGCAGATGGCTTACCAAATGATACCCCACTCACAGTTGTATACTCACCTTATGATGAGGACGATATCAAAAGGACAGTGCAGACTAATGCTGGCAGTGGAAAAGTGTTCCTAGATGGACTGTCATCTGGGATGAGATACTCTGTTTGCCTCATAGCAAAAGGCAGTGCTGCTGGAAAAGATCCTTGCATTGACTTCTACACATTGGTCAATGTAGAGGACGGTGGGCAGAACCAATTTTTCATTATCATAAGTGGCATTGCTTGTGCTTTGGTTTTGTCCCTTATTGCATTGTTGCTCTACAAGATTCTGGCTCTGTACTGCAAGGGACACAGCACCAATTTGGACCAAGAAGAGCTTGAAAAAGACAGCTATGTCAAGTTTGAGACACTTTCAATGAAACAAAGGACCTTGAACTCTCGTCCTACAGAGCTTTGGGCAAGGAGAGCGACTCATGAATCAGAGCGAATGCTCCTGTGCTCCAGGTCTAGCATTGACTCCCAGATGACGTATAAGAGTGACAGTTCCCGGTCTGAGTATCTCTGCTGACGCCAAGAATCCATGGCCATTGCTCAAACGCCATGCTAGTAACACATTATATGAAATACTTGGTATATGCCTTTTATGACACTGATAAACTATTAACTATGAAATAATTTATAAATCTTtataaatatactatatatatatatatatatatatatatatcatttttaCAGAGTGGGGCTGTAAAAGATAATTTGCTGTATTGAATGGTAAAACACATTTAGTCAGCATTTTCTATCAACTACTTATCTATAAAGATTTATATAATGATTTAGACAATGTGTAGATGACATGAAAGCATTCCCTGAAGGTTGTTTGGGTGTTAAAAGATCCTATGTTAAAAGCCCCATCAGATCAGTCAATGACTATTTTTATTCATGTCCTTATTTATTATGGAGCCTTATATTTGATAATATTTGATGAAGACATTCGAATGGTTGTCACTACAGCACGGCACCTTTGTTGGACTATATAACTTTTAAATAGTACCATACAAAGAGCCTGTCCGTTagctgtgtgtggtgttttatgttaTACCTATTGCCAAAATTAAAGTATCAGATATGAACATCATGTGGTGGTGTCCAAGAAGACCCATTATCCACTATCACATTTAAGACATTATTGTTACTTTAAGCATCAAGCAGATTGTTGCCTTAATGGAGAAGGAAGTATGGTCATGGACAAGAAAGTATGGTCATTGGGTTTAATAGAATATGTGTCTAGTGACTCTCGTCTGATTCACATTGCCAGTTTCAATAACTTTATGTATACATTTGTTGGCAAATGAAGATGTACAtctgtttttaataaactgaaCAATATTTCAATTA

Function

symbol description
lrit3 Involved in regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in dendrite; endoplasmic reticulum membrane; and perikaryon. Predicted to be integral component of membrane. Implicated in congenital stationary night blindness 1F.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814482.1 True 2966 mRNA 0.42 4 29811122 29818291

Neighbor

gene id symbol gene type direction distance location
egf egf coding downstream 3084 29781903 ~ 29808038 (-)
gar1 gar1 coding downstream 279464 29528342 ~ 29531658 (-)
LOC120567329 LOC107095807,LOC107379637,LOC102193053,LOC103355614,LOC108236668 coding downstream 283130 29523571 ~ 29527992 (-)
eif4ea LOC102291913,LOC100695556,LOC103355613,LOC102778934,LOC108236682 coding downstream 291859 29511696 ~ 29519263 (-)
lingo2 lingo2,LOC103356499 coding downstream 575523 28989623 ~ 29235599 (-)
gpm6aa gpm6a,LOC103355621,LOC104917912 coding upstream 1498 29819789 ~ 29841438 (-)
spata4 NA coding upstream 29619 29847910 ~ 29852684 (-)
asb5a asb5,LOC103355623,LOC101464329,LOC100697054,LOC107095814 coding upstream 34538 29852829 ~ 29859112 (-)
tdo2a tdo2 coding upstream 49241 29867532 ~ 29874648 (-)
si:dkey-237h12.3 tenm3 coding upstream 62899 29881190 ~ 30028138 (-)
G108600 NA non-coding downstream 34701 29723824 ~ 29776421 (-)
LOC120567321 NA non-coding downstream 60586 29553435 ~ 29750536 (-)
G108560 NA non-coding downstream 537168 29273594 ~ 29273954 (-)
LOC120567081 NA non-coding downstream 882217 28833175 ~ 28928905 (-)
G108524 LOC104954097 non-coding downstream 1130023 28678279 ~ 28681099 (-)
G108702 NA non-coding upstream 457573 30275864 ~ 30282627 (-)
G108718 NA non-coding upstream 569230 30387521 ~ 30387854 (-)
G108722 NA non-coding upstream 584369 30402660 ~ 30403036 (-)
G108772 rapgef2 non-coding upstream 834579 30652870 ~ 30654526 (-)
G108785 NA non-coding upstream 915268 30733559 ~ 30733770 (-)
cxcl14 cxcl14 other downstream 1003128 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 1015614 28714863 ~ 28795508 (-)
LOC120566547 NA other downstream 1772422 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 1787893 28021737 ~ 28023229 (-)
LOC120566991 NA other downstream 1855428 27952256 ~ 27955694 (-)
gask1b fam198b,LOC102776406 other upstream 528687 30346978 ~ 30356856 (-)
G108777 rapgef2 other upstream 842621 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 851240 30669531 ~ 30670849 (-)
LOC120566409 limch1 other upstream 1566799 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 1601588 31419879 ~ 31485976 (-)

Expression


Co-expression Network