LOC120566339


Basic Information

Item Value
gene id LOC120566339
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25650715 ~ 25652662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640378.1
GTTTGTATGGATTGATGAGGAGAAGCAGAGAGTTGATGTCGAACAGAACACATTCCAGCGCTGTAGACAGAGAAGAAGGGAAACGAGCAGGGGGAAACACACAGCTGCCCTCTGTGATAAGAAAAGGAGCAGGTGAAGCGGTCAAGACTGTTACAAGATAGAGGAGTTACAAGATCCACACCTTTATGCAGGACGATTATCGTCACTGCTGGAGAGAAATGATATCAGCCCAGAGCTAGGCTCACCTCGCCCTGTATGTGTCTTCACACCACATCTGCACAGCTCTCAGCCTGGGCCCGGGTGGAGATTGAGGTCCTTGGTGGACGCCTGCTTGCACTGCACTGTGGATGACTAGTTCAGACTTTGCCACTGTTGCGGCTTTGCTGCAGTCATTTGAAGGTAGCCGGCTCTAAGAATGAGATATTAGTTTTGAGACGAAAGTGGGTAGAAATTATAAAGACTCTCAGGGAACGTATTTTTCCTGGCCCAGAGACAAAGCTATCCAAACAAGAAGAATAACCTTTTGTTATGGCTTTATATTGTATTGAAGAGGTTAGTCTTTGTCACAGTGAGAAGTGGGCTGGTCATTGCTATCAGTAAGAAGACTGATTACCCTCTCCATCTCCCCACCACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640378.1 True 635 lncRNA 0.47 3 25650715 25652662

Neighbor

gene id symbol gene type direction distance location
pcdh19 pcdh19 coding upstream 2514 25594313 ~ 25648201 (+)
elf1 LOC104965894,LOC103353227,LOC102314295,LOC100712278 coding upstream 287466 25321527 ~ 25363249 (+)
trnae-uuc_61 NA coding upstream 329419 25321225 ~ 25321296 (+)
nkrf nkrf coding upstream 335284 25311039 ~ 25315431 (+)
upf3b upf3b coding upstream 381485 25265515 ~ 25269230 (+)
glra4a LOC106949970,LOC101466695,LOC106920031,LOC106514543,LOC108231179,LOC103151720,LOC100711741,LOC103353264,LOC107377714 coding downstream 705140 26357802 ~ 26418964 (+)
gla gla coding downstream 799122 26451784 ~ 26457912 (+)
mars2 mars2 coding downstream 831033 26483695 ~ 26486831 (+)
LOC120566768 enox2,LOC101473670,LOC100709872,LOC102784575,LOC102307254 coding downstream 1192025 26844687 ~ 27069215 (+)
LOC120567492 NA coding downstream 1487674 27140336 ~ 27140454 (+)
G108030 NA non-coding upstream 1913 25648534 ~ 25648802 (+)
G108020 NA non-coding upstream 151849 25498616 ~ 25498866 (+)
G107985 tnmd non-coding upstream 255957 25380713 ~ 25394758 (+)
G107988 NA non-coding upstream 263080 25386468 ~ 25387635 (+)
G107981 NA non-coding upstream 360516 25288119 ~ 25290199 (+)
G108037 NA non-coding downstream 40445 25693107 ~ 25693415 (+)
G108039 NA non-coding downstream 121859 25774521 ~ 25774788 (+)
G108043 NA non-coding downstream 184701 25837363 ~ 25839355 (+)
G108062 NA non-coding downstream 620926 26273588 ~ 26273788 (+)
G108066 LOC100304549,LOC100219516,LOC106514001 non-coding downstream 806378 26459040 ~ 26460626 (+)
sept6 sept6,LOC106945475 other upstream 340497 25291607 ~ 25310218 (+)
rpl39 NA other upstream 368508 25279568 ~ 25282207 (+)
LOC120567498 NA other upstream 369635 25280948 ~ 25281080 (+)
apln NA other upstream 553692 25073213 ~ 25097023 (+)
nox1 nox1 other upstream 803822 24840186 ~ 24846893 (+)
btk btk other downstream 808626 26461288 ~ 26476570 (+)
timm8a timm8a other downstream 824134 26476796 ~ 26479297 (+)
grxcr1a grxcr1,si:dkey-109l4.6,LOC102787492,LOC106600617,LOC107601454 other downstream 1734984 27387646 ~ 27393621 (+)
LOC120566985 NA other downstream 2323665 27976327 ~ 28046891 (+)
fgfrl1a fgfrl1,LOC104949359 other downstream 2831015 28483677 ~ 28558216 (+)

Expression


Co-expression Network