LOC120566721 (LOC102291516,LOC101487913,LOC102195901)


Basic Information

Item Value
gene id LOC120566721
gene name LOC102291516,LOC101487913,LOC102195901
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19287076 ~ 19288469 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640451.1
AGTGAACTGCTGCTAAAAATTCCGTTGTTCCttttgcacaatgacaatacatCTTCTGATTCTGAACATACCAGAAAACATCACTAACTATATTTAGCTGTTAATGATTGTGCAAAGCTTTAAAGACCAGCAGGAACTATGCTAAGTAGTTTATTTCTAAAGGTTATTAGTTGATGGTGCAGCTTCTTAATCATGTTGTGTTCTGTTTGGGTTTTCACTCACATTATGTTTAGTagcatttgtttacatttttcctTTAAATTTAACTTTCTGTTACATTTTCCGCCCTGGATATAAAAAGATAGAAGAacatatatatttcatattttacatAGCTCTGTATGGATGTCTGGTCTGTTCTGTATTAGAAACTGTATAAAATGACCAAGATTCTGTTAATATGAAAAGTCATCTGAGTGTGTTTCCTTCAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCTTCAGTACAGCTGGACTCTGGATGGACGCATACTGACAGACGCTGAGCTCCTCTCTGGAAATACTGAGACTAACAGCATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGTCAGTAATGTCTCAGAAGAAAAGACAATATCTACATGTGATCACTCCCTGCTCATATGTGATGTGCGAGCAGCTTCTTCTGGATGACAGACGAGTATGGAGCCAGTTGTAATTCTTCTTGTGATGTTAGCTGGAGTATCACATGCTTTCTCTTCAGCTGCTGAGACAAAATGTAATGCCACACAGAACACATCTCTGTGCTCTGTTACTCTCGGAGGATCTATGTACATCCAAGTGATGACCAATGCCAGCGGCCATAAGCTGCGGTGTAAGAAGCACCTTCCCACTGAATCCATAAATGTATTCTCTGTGAAGAGAAACAAGTTGACGATACAGGAGTATTTTAGAAACAGGACAGAGTTTTTCATCAACAACGGGACCCTGAAGATCACAAACGTGGAGAGGAATGATTCAGGTCAATACATCATAGATGTCTTTACTcagggtcatgaccgaaagaacgagatccagggtacaa

Function

NR:

description
PREDICTED: hepatocyte cell adhesion molecule-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640451.1 True 1127 lncRNA 0.41 3 19287076 19288469

Neighbor

gene id symbol gene type direction distance location
LOC120566716 LOC102215832 coding downstream 4402 19277131 ~ 19282674 (-)
pdgfrb pdgfrb coding downstream 83975 19176247 ~ 19203101 (-)
LOC120567146 csf1r coding downstream 111335 19161748 ~ 19175741 (-)
LOC120567311 NA coding downstream 140049 19145238 ~ 19147027 (-)
slc35a4 slc35a4 coding downstream 141929 19143709 ~ 19145147 (-)
arsia arsi,LOC104927051 coding upstream 13336 19301805 ~ 19305065 (-)
aldob aldob coding upstream 43237 19331706 ~ 19334698 (-)
LOC120567398 NA coding upstream 77351 19365820 ~ 19373983 (-)
LOC120567397 NA coding upstream 87735 19376204 ~ 19384972 (-)
si:ch211-203d1.3 ssh3 coding upstream 126199 19414668 ~ 19426862 (-)
LOC120566720 NA non-coding downstream 21600 19262913 ~ 19265476 (-)
LOC120566722 NA non-coding downstream 24204 19262030 ~ 19262872 (-)
G106164 NA non-coding downstream 71158 19214800 ~ 19215918 (-)
G106128 NA non-coding downstream 153063 19129286 ~ 19134013 (-)
G106085 NA non-coding downstream 214334 19072063 ~ 19072742 (-)
G106243 NA non-coding upstream 24340 19312809 ~ 19314416 (-)
G106248 NA non-coding upstream 31794 19320263 ~ 19321306 (-)
G106259 NA non-coding upstream 52025 19340494 ~ 19450124 (-)
G106276 NA non-coding upstream 106341 19394810 ~ 19395994 (-)
G106303 NA non-coding upstream 188699 19477168 ~ 19557572 (-)
LOC120566717 LOC102215832 other downstream 36640 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 242125 19017752 ~ 19044951 (-)
LOC120566257 NA other downstream 595666 18687788 ~ 18691410 (-)
reep2 reep2,LOC102782871 other downstream 972661 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 1218584 18067425 ~ 18068492 (-)
tomm5 NA other upstream 147370 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 189461 19477930 ~ 19482625 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other upstream 683364 19971833 ~ 19981633 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 942439 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 1787288 21075757 ~ 21110067 (-)

Expression


Co-expression Network